Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014946

Physical Location & Seq

Genomic Coordinates Reverse (-)

59976301 .. 59979463

Gene Structure 3163 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26812

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCTTTGCCGAATCAGCAGACCGTGGAGTACCCGAGCTTCAAGCTCGTAATCGTTGGTGATGGCGGAACAGGGAAAACAACCTTTGTGAAGAGACATCTTACTGGTGAATTTGAGAAGAAATATGAACCTACTATTGGTGTTGAGGTCCATCCATTGGACTTTTTCACCAACTGCGGAAAAATTCGTTTCTACTGCTGGGATACTGCTGGGCAAGAGAAATTTGGTGGTCTTAGAGATGGATACTATATCCATGGGCAATGTGCAATTATCATGTTTGATGTTACTGCCCGATTGACATACAAGAATGTTCCAACATGGCACAGGGATCTTTGCAGGGTCTGTGAAAACATACCAATTGTGCTTTGTGGAAACAAAGTTGATGTGAAGAACAGGCAGGTCAAGGCCAAGCAGGTCACTTTCCACAGGAAGAAGAATCTGCAGTACTACGAAATATCAGCAAAGAGCAATTATAACTTTGAGAAGCCTTTTCTATACCTTGCCAGGAAGCTTGCAGGGGATGCTAATCTGCATTTTGTCGAATCCCCTGCTCTGGCTCCTCCAGAGGTTCACATAGATCTGGCTGCACAGCAGCAGCACGAGGCTGAGCTTGCTCAAGCTGCTAGTCAGCCCCTTCCCGATGATGACGATGATGCATTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005794 GO:0006403 GO:0006405 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0010035 GO:0010038 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0031503 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042254 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046686 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 ko05166 ko05169 map03008 map03013 map05166 map05169

Pfam Domains

Protein Families

Ras

Protein Analysis

221

Amino Acids

25.13

Weight (kDa)

6.45

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	13 - 138	9.2e-11	ADP-ribosylation factor family
Ras	PF00071	15 - 171	1.2e-47	Ras family
Roc	PF08477	15 - 128	2.9e-30	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55190
fragaria_vesca	FvH4_2g29670
malus_domestica	MD08G1143300.v1.1 MD15G1120100.v1.1
prunus_persica	Prupe.1G472900_v2.0.a1 Prupe.7G237800_v2.0.a1
pyrus_communis	pycom08g12200 pycom15g10820
rosa_chinensis	RchiOBHm_Chr6g0298651
rosa_laevigata	RLG00000011496
rosa_multiflora	Rmu_sc0007345.1_g000002 Rmu_sc0008099.1_g000009
rosa_rugosa	Rorug06G0281800
rosa_samantha	Rh6BG401200 Rh6DG393800
rosa_wichuraiana	Rw6G034400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	474
Acc36I	ACCTGC	2 cut(s)	388, 403
AccB7I	CCANNNNNTGG	1 cut(s)	157
AciI	CCGC	2 cut(s)	66, 177
AclWI	GGATC	1 cut(s)	336
AcsI	RAATTY	3 cut(s)	110, 183, 221
AfaI	GTAC	2 cut(s)	32, 446
AfiI	CCNNNNNNNGG	3 cut(s)	137, 157, 553
AgsI	TTSAA	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	503
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	5 cut(s)	39, 46, 511, 610, 620
AluI	AGCT	5 cut(s)	39, 46, 511, 610, 620
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	1 cut(s)	336
AlwNI	CAGNNNCTG	1 cut(s)	342
Ama87I	CYCGRG	1 cut(s)	34
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	4 cut(s)	584, 592, 595, 620
ApoI	RAATTY	3 cut(s)	110, 183, 221
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	3 cut(s)	71, 119, 160
AvaI	CYCGRG	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	148
BarI	GAAGNNNNNNTAC	2 cut(s)	23, 55
BauI	CACGAG	1 cut(s)	599
BbvI	GCAGC	4 cut(s)	571, 604, 607, 607
BccI	CCATC	3 cut(s)	56, 159, 233
BcgI	CGANNNNNNTGC	2 cut(s)	530, 564
BciT130I	CCWGG	1 cut(s)	505
BciVI	GTATCC	2 cut(s)	196, 236
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	1 cut(s)	624
BfmI	CTRYAG	1 cut(s)	440
BfuAI	ACCTGC	2 cut(s)	388, 403
BfuI	GTATCC	2 cut(s)	196, 236
BglII	AGATCT	1 cut(s)	577
BisI	GCNGC	4 cut(s)	585, 593, 596, 621
BlpI	GCTNAGC	1 cut(s)	606
BlsI	GCNGC	4 cut(s)	586, 594, 597, 622
BmcAI	AGTACT	1 cut(s)	446
Bme1390I	CCNGG	1 cut(s)	505
Bme18I	GGWCC	1 cut(s)	148
BmeT110I	CYCGRG	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	1 cut(s)	505
BmsI	GCATC	2 cut(s)	511, 643
BpmI	CTGGAG	1 cut(s)	546
Bpu1102I	GCTNAGC	1 cut(s)	606
BpuEI	CTTGAG	1 cut(s)	600
BsaBI	GATNNNNATC	1 cut(s)	525
BsaJI	CCNNGG	2 cut(s)	24, 253
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 157, 553
Bse1I	ACTGG	1 cut(s)	109
Bse3DI	GCAATG	1 cut(s)	266
Bse8I	GATNNNNATC	1 cut(s)	525
BseBI	CCWGG	1 cut(s)	505
BseDI	CCNNGG	2 cut(s)	24, 253
BseGI	GGATG	2 cut(s)	151, 526
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	3 cut(s)	137, 157, 553
BseMI	GCAATG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	597
BseNI	ACTGG	1 cut(s)	109
BseRI	GAGGAG	1 cut(s)	549
BseXI	GCAGC	4 cut(s)	571, 604, 607, 607
BseYI	CCCAGC	2 cut(s)	198, 209
BsgI	GTGCAG	1 cut(s)	570
BshFI	GGCC	1 cut(s)	407
BsiHKCI	CYCGRG	1 cut(s)	34
BslI	CCNNNNNNNGG	3 cut(s)	137, 157, 553
BsmAI	GTCTC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	407
BsoBI	CYCGRG	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	328, 577
Bsp1720I	GCTNAGC	1 cut(s)	606
Bsp19I	CCATGG	1 cut(s)	253
BspACI	CCGC	2 cut(s)	66, 177
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	1 cut(s)	598
BspLI	GGNNCC	1 cut(s)	558
BspMAI	CTGCAG	1 cut(s)	444
BspMI	ACCTGC	2 cut(s)	388, 403
BspPI	GGATC	1 cut(s)	336
BsrDI	GCAATG	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	2 cut(s)	24, 253
BssMI	GATC	2 cut(s)	328, 577
BssSI	CACGAG	1 cut(s)	599
BssT1I	CCWWGG	1 cut(s)	253
Bst2BI	CACGAG	1 cut(s)	599
Bst2UI	CCWGG	1 cut(s)	505
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	86
BstAPI	GCANNNNNTGC	1 cut(s)	521
BstC8I	GCNNGC	2 cut(s)	513, 612
BstDEI	CTNAG	2 cut(s)	233, 606
BstDSI	CCRYGG	2 cut(s)	24, 253
BstF5I	GGATG	2 cut(s)	151, 526
BstKTI	GATC	2 cut(s)	331, 580
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	2 cut(s)	328, 577
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 521, 611, 620
BstNI	CCWGG	1 cut(s)	505
BstSCI	CCNGG	1 cut(s)	503
BstSFI	CTRYAG	1 cut(s)	440
BstV1I	GCAGC	4 cut(s)	571, 604, 607, 607
BstX2I	RGATCY	2 cut(s)	328, 577
BstYI	RGATCY	2 cut(s)	328, 577
BsuI	GTATCC	2 cut(s)	196, 236
BsuRI	GGCC	1 cut(s)	407
BtgI	CCRYGG	2 cut(s)	24, 253
BtsCI	GGATG	2 cut(s)	151, 526
BveI	ACCTGC	2 cut(s)	388, 403
Cac8I	GCNNGC	2 cut(s)	513, 612
CaiI	CAGNNNCTG	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	31, 445
CviAII	CATG	3 cut(s)	254, 274, 318
CviQI	GTAC	2 cut(s)	31, 445
DdeI	CTNAG	2 cut(s)	233, 606
DpnI	GATC	2 cut(s)	330, 579
DpnII	GATC	2 cut(s)	328, 577
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
EciI	GGCGGA	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	503
EcoT14I	CCWWGG	1 cut(s)	253
EcoT22I	ATGCAT	1 cut(s)	658
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	3 cut(s)	257, 277, 321
FatI	CATG	3 cut(s)	253, 273, 317
Fnu4HI	GCNGC	4 cut(s)	585, 593, 596, 621
FokI	GGATG	2 cut(s)	138, 533
Fsp4HI	GCNGC	4 cut(s)	585, 593, 596, 621
FspBI	CTAG	1 cut(s)	624
GluI	GCNGC	4 cut(s)	585, 593, 596, 621
GsaI	CCCAGC	2 cut(s)	202, 213
GsuI	CTGGAG	1 cut(s)	546
HaeIII	GGCC	1 cut(s)	407
Hin1II	CATG	3 cut(s)	257, 277, 321
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	3 cut(s)	13, 436, 542
HphI	GGTGA	3 cut(s)	71, 119, 160
Hpy166II	GTNNAC	1 cut(s)	571
Hpy188III	TCNNGA	2 cut(s)	563, 638
Hpy8I	GTNNAC	1 cut(s)	571
HpyAV	CCTTC	1 cut(s)	644
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	7 cut(s)	266, 336, 442, 515, 532, 587, 656
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 521, 611, 620
HpyF3I	CTNAG	2 cut(s)	233, 606
Hsp92II	CATG	3 cut(s)	257, 277, 321
Kzo9I	GATC	2 cut(s)	328, 577
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	4 cut(s)	571, 604, 607, 607
LweI	GCATC	2 cut(s)	511, 643
MaeI	CTAG	1 cut(s)	624
MaeIII	GTNAC	2 cut(s)	283, 415
MalI	GATC	2 cut(s)	330, 579
MboI	GATC	2 cut(s)	328, 577
MboII	GAAGA	5 cut(s)	103, 130, 400, 442, 445
MfeI	CAATTG	1 cut(s)	357
MflI	RGATCY	2 cut(s)	328, 577
MluCI	AATT	6 cut(s)	110, 183, 221, 267, 357, 469
MmeI	TCCRAC	1 cut(s)	338
MnlI	CCTC	4 cut(s)	139, 559, 570, 595
Mph1103I	ATGCAT	1 cut(s)	658
MspR9I	CCNGG	1 cut(s)	505
MunI	CAATTG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	505
MwoI	GCNNNNNNNGC	4 cut(s)	16, 521, 611, 620
NcoI	CCATGG	1 cut(s)	253
NdeII	GATC	2 cut(s)	328, 577
NlaIII	CATG	3 cut(s)	257, 277, 321
NlaIV	GGNNCC	1 cut(s)	558
NmuCI	GTSAC	1 cut(s)	415
NsiI	ATGCAT	1 cut(s)	658
PfeI	GAWTC	3 cut(s)	13, 436, 542
PflMI	CCANNNNNTGG	1 cut(s)	157
PkrI	GCNGC	4 cut(s)	586, 594, 597, 622
PsiI	TTATAA	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	503
PspFI	CCCAGC	2 cut(s)	198, 209
PspGI	CCWGG	1 cut(s)	503
PspN4I	GGNNCC	1 cut(s)	558
PspPI	GGNCC	1 cut(s)	148
PstI	CTGCAG	1 cut(s)	444
PstNI	CAGNNNCTG	1 cut(s)	342
PsuI	RGATCY	2 cut(s)	328, 577
RsaI	GTAC	2 cut(s)	32, 446
RsaNI	GTAC	2 cut(s)	31, 445
SatI	GCNGC	4 cut(s)	585, 593, 596, 621
Sau3AI	GATC	2 cut(s)	328, 577
Sau96I	GGNCC	1 cut(s)	148
ScaI	AGTACT	1 cut(s)	446
ScrFI	CCNGG	1 cut(s)	505
SfaNI	GCATC	2 cut(s)	511, 643
SfcI	CTRYAG	1 cut(s)	440
SinI	GGWCC	1 cut(s)	148
SmlI	CTYRAG	1 cut(s)	615
SmoI	CTYRAG	1 cut(s)	615
Sse9I	AATT	6 cut(s)	110, 183, 221, 267, 357, 469
SsiI	CCGC	2 cut(s)	66, 177
SspMI	CTAG	1 cut(s)	624
StyD4I	CCNGG	1 cut(s)	503
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	1 cut(s)	540
TasI	AATT	6 cut(s)	110, 183, 221, 267, 357, 469
TatI	WGTACW	1 cut(s)	444
TfiI	GAWTC	3 cut(s)	13, 436, 542
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	4 cut(s)	584, 592, 595, 620
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	1 cut(s)	141
Van91I	CCANNNNNTGG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	148
XapI	RAATTY	3 cut(s)	110, 183, 221
XspI	CTAG	1 cut(s)	624
ZrmI	AGTACT	1 cut(s)	446
Zsp2I	ATGCAT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.