Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014946

Physical Location & Seq

Genomic Coordinates Forward (+)

39313023 .. 39316415

Gene Structure 3393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G472900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCTTTGCCGAATCAGCAGACCGTGGATTACCCGAGCTTCAAGCTCGTAATCGTTGGCGATGGTGGAACAGGAAAAACTACCTTTGTGAAGAGACATCTTACTGGTGAATTTGAGAAGAAATACGAACCAACTATTGGCGTGGAGGTCCATCCATTGGACTTTTTCACCAACTGTGGAAAAATTAGATTCTATTGCTGGGACACAGCCGGGCAAGAGAAATTTGGTGGTCTTAGAGATGGATACTACATCCATGGACAATGTGCAATTATCATGTTTGATGTTACTGCTCGATTGACATACAAGAATGTTCCGACTTGGCATCGGGATCTTTGCAGGGTCTGTGAGAACATTCCAATTGTTCTTTGTGGAAACAAGGTTGATGTGAAGAACAGGCAGGTCAAGGCAAAGCAGGTTACTTTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCAGCAAAGAGCAACTATAACTTTGAGAAGCCTTTCCTATACCTTGCCAGAAAGCTTGCTGGGGATCCTAATTTGCATTTTGTTGAGTCACCTGCCTTGGCTCCTCCAGAAGTACACATTGATCTGGCTGCACAACAACAGCACGAAGCCGAGCTCGCTGCAGCTGCCAGCCAGCCCCTTCCTGATGATGACGATGACACATTCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005794 GO:0005911 GO:0006403 GO:0006405 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0009506 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030054 GO:0031503 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0035639 GO:0036094 GO:0042254 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0055044 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 ko05166 ko05169 map03008 map03013 map05166 map05169

Pfam Domains

Protein Families

Ras

Protein Analysis

222

Amino Acids

25.11

Weight (kDa)

6.45

Isoelectric Point (pI)

31.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55190
fragaria_vesca	FvH4_2g29670
malus_domestica	MD08G1143300.v1.1 MD15G1120100.v1.1
prunus_persica	Prupe.1G472900_v2.0.a1 Prupe.7G237800_v2.0.a1
pyrus_communis	pycom08g12200 pycom15g10820
rosa_chinensis	RchiOBHm_Chr6g0298651
rosa_laevigata	RLG00000011496
rosa_multiflora	Rmu_sc0007345.1_g000002 Rmu_sc0008099.1_g000009
rosa_rugosa	Rorug06G0281800
rosa_samantha	Rh6BG401200 Rh6DG393800
rosa_wichuraiana	Rw6G034400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	556
Acc36I	ACCTGC	3 cut(s)	388, 403, 556
AccB7I	CCANNNNNTGG	2 cut(s)	137, 157
AclWI	GGATC	3 cut(s)	336, 515, 528
AcsI	RAATTY	2 cut(s)	110, 221
AfaI	GTAC	2 cut(s)	446, 570
AfiI	CCNNNNNNNGG	2 cut(s)	137, 157
AgsI	TTSAA	1 cut(s)	43
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	5 cut(s)	39, 46, 511, 610, 620
AluI	AGCT	5 cut(s)	39, 46, 511, 610, 620
Alw21I	GWGCWC	1 cut(s)	612
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	3 cut(s)	336, 515, 528
AlwNI	CAGNNNCTG	1 cut(s)	342
Ama87I	CYCGRG	1 cut(s)	34
ApeKI	GCWGC	4 cut(s)	584, 614, 617, 620
ApoI	RAATTY	2 cut(s)	110, 221
Asp700I	GAANNNNTTC	1 cut(s)	488
AspS9I	GGNCC	1 cut(s)	148
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	3 cut(s)	119, 160, 537
AvaI	CYCGRG	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	148
BamHI	GGATCC	1 cut(s)	520
BanII	GRGCYC	1 cut(s)	612
Bbv12I	GWGCWC	1 cut(s)	612
BbvI	GCAGC	4 cut(s)	571, 601, 607, 629
BccI	CCATC	3 cut(s)	56, 159, 233
BcgI	CGANNNNNNTGC	2 cut(s)	596, 630
BciVI	GTATCC	1 cut(s)	236
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	88
BfmI	CTRYAG	2 cut(s)	440, 615
BfuAI	ACCTGC	3 cut(s)	388, 403, 556
BfuI	GTATCC	1 cut(s)	236
BisI	GCNGC	4 cut(s)	585, 615, 618, 621
BlsI	GCNGC	4 cut(s)	586, 616, 619, 622
BmcAI	AGTACT	1 cut(s)	446
Bme1390I	CCNGG	1 cut(s)	211
Bme18I	GGWCC	1 cut(s)	148
BmeT110I	CYCGRG	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	2 cut(s)	522, 558
BmrFI	CCNGG	1 cut(s)	211
BmsI	GCATC	1 cut(s)	331
BpmI	CTGGAG	1 cut(s)	546
BpuMI	CCSGG	1 cut(s)	211
BsaJI	CCNNGG	3 cut(s)	24, 253, 552
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 157
Bse1I	ACTGG	1 cut(s)	109
BseDI	CCNNGG	3 cut(s)	24, 253, 552
BseGI	GGATG	2 cut(s)	151, 249
BseLI	CCNNNNNNNGG	2 cut(s)	137, 157
BseNI	ACTGG	1 cut(s)	109
BseRI	GAGGAG	1 cut(s)	549
BseXI	GCAGC	4 cut(s)	571, 601, 607, 629
BseYI	CCCAGC	2 cut(s)	198, 515
BsgI	GTGCAG	1 cut(s)	570
BsiHKAI	GWGCWC	1 cut(s)	612
BsiHKCI	CYCGRG	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	137, 157
BsmAI	GTCTC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	215
BsoBI	CYCGRG	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	612
Bsp143I	GATC	3 cut(s)	328, 520, 577
Bsp19I	CCATGG	1 cut(s)	253
BspLI	GGNNCC	2 cut(s)	522, 558
BspMAI	CTGCAG	2 cut(s)	444, 619
BspMI	ACCTGC	3 cut(s)	388, 403, 556
BspPI	GGATC	3 cut(s)	336, 515, 528
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	3 cut(s)	24, 253, 552
BssMI	GATC	3 cut(s)	328, 520, 577
BssT1I	CCWWGG	2 cut(s)	253, 552
Bst4CI	ACNGT	2 cut(s)	25, 176
Bst6I	CTCTTC	1 cut(s)	86
BstC8I	GCNNGC	4 cut(s)	513, 612, 625, 629
BstDEI	CTNAG	1 cut(s)	233
BstDSI	CCRYGG	2 cut(s)	24, 253
BstF5I	GGATG	2 cut(s)	151, 249
BstKTI	GATC	3 cut(s)	331, 523, 580
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	3 cut(s)	328, 520, 577
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 611, 620
BstSCI	CCNGG	1 cut(s)	209
BstSFI	CTRYAG	2 cut(s)	440, 615
BstV1I	GCAGC	4 cut(s)	571, 601, 607, 629
BstX2I	RGATCY	2 cut(s)	328, 520
BstYI	RGATCY	2 cut(s)	328, 520
BsuI	GTATCC	1 cut(s)	236
BtgI	CCRYGG	2 cut(s)	24, 253
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	151, 249
BveI	ACCTGC	3 cut(s)	388, 403, 556
Cac8I	GCNNGC	4 cut(s)	513, 612, 625, 629
CaiI	CAGNNNCTG	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	445, 569
CviAII	CATG	2 cut(s)	254, 274
CviQI	GTAC	2 cut(s)	445, 569
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	3 cut(s)	330, 522, 579
DpnII	GATC	3 cut(s)	328, 520, 577
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Ecl136II	GAGCTC	1 cut(s)	610
Eco130I	CCWWGG	2 cut(s)	253, 552
Eco24I	GRGCYC	1 cut(s)	612
Eco32I	GATATC	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	610
Eco88I	CYCGRG	1 cut(s)	34
EcoICRI	GAGCTC	1 cut(s)	610
EcoRV	GATATC	1 cut(s)	456
EcoT14I	CCWWGG	2 cut(s)	253, 552
EcoT38I	GRGCYC	1 cut(s)	612
ErhI	CCWWGG	2 cut(s)	253, 552
FaeI	CATG	2 cut(s)	257, 277
FaiI	YATR	6 cut(s)	255, 275, 301, 450, 474, 496
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	2 cut(s)	253, 273
Fnu4HI	GCNGC	4 cut(s)	585, 615, 618, 621
FokI	GGATG	2 cut(s)	138, 236
FriOI	GRGCYC	1 cut(s)	612
Fsp4HI	GCNGC	4 cut(s)	585, 615, 618, 621
GluI	GCNGC	4 cut(s)	585, 615, 618, 621
GsaI	CCCAGC	2 cut(s)	202, 519
GsuI	CTGGAG	1 cut(s)	546
HapII	CCGG	1 cut(s)	210
Hin1II	CATG	2 cut(s)	257, 277
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	4 cut(s)	13, 189, 436, 542
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	3 cut(s)	119, 160, 537
Hpy166II	GTNNAC	1 cut(s)	571
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	3 cut(s)	326, 563, 638
Hpy8I	GTNNAC	1 cut(s)	571
HpyAV	CCTTC	1 cut(s)	644
HpyCH4III	ACNGT	2 cut(s)	25, 176
HpyCH4V	TGCA	6 cut(s)	266, 336, 442, 532, 587, 617
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 611, 620
HpyF3I	CTNAG	1 cut(s)	233
Hsp92II	CATG	2 cut(s)	257, 277
Kzo9I	GATC	3 cut(s)	328, 520, 577
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	4 cut(s)	571, 601, 607, 629
LweI	GCATC	1 cut(s)	331
MaeIII	GTNAC	3 cut(s)	283, 415, 543
MalI	GATC	3 cut(s)	330, 522, 579
MboI	GATC	3 cut(s)	328, 520, 577
MboII	GAAGA	5 cut(s)	103, 130, 400, 442, 445
MfeI	CAATTG	1 cut(s)	357
MflI	RGATCY	2 cut(s)	328, 520
MhlI	GDGCHC	1 cut(s)	612
MluCI	AATT	6 cut(s)	110, 183, 221, 267, 357, 526
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	1 cut(s)	338
MnlI	CCTC	2 cut(s)	139, 570
MroXI	GAANNNNTTC	1 cut(s)	488
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	211
MunI	CAATTG	1 cut(s)	357
MwoI	GCNNNNNNNGC	3 cut(s)	16, 611, 620
NciI	CCSGG	1 cut(s)	211
NcoI	CCATGG	1 cut(s)	253
NdeII	GATC	3 cut(s)	328, 520, 577
NlaIII	CATG	2 cut(s)	257, 277
NlaIV	GGNNCC	2 cut(s)	522, 558
NmeAIII	GCCGAG	1 cut(s)	631
NmuCI	GTSAC	1 cut(s)	543
PaqCI	CACCTGC	1 cut(s)	556
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	3 cut(s)	13, 189, 436
PflMI	CCANNNNNTGG	2 cut(s)	137, 157
PkrI	GCNGC	4 cut(s)	586, 616, 619, 622
PleI	GAGTC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	550
Psp124BI	GAGCTC	1 cut(s)	612
PspFI	CCCAGC	2 cut(s)	198, 515
PspN4I	GGNNCC	2 cut(s)	522, 558
PspPI	GGNCC	1 cut(s)	148
PstI	CTGCAG	2 cut(s)	444, 619
PstNI	CAGNNNCTG	1 cut(s)	342
PsuI	RGATCY	2 cut(s)	328, 520
PvuII	CAGCTG	1 cut(s)	620
RsaI	GTAC	2 cut(s)	446, 570
RsaNI	GTAC	2 cut(s)	445, 569
SacI	GAGCTC	1 cut(s)	612
SatI	GCNGC	4 cut(s)	585, 615, 618, 621
Sau3AI	GATC	3 cut(s)	328, 520, 577
Sau96I	GGNCC	1 cut(s)	148
ScaI	AGTACT	1 cut(s)	446
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	612
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	2 cut(s)	440, 615
SinI	GGWCC	1 cut(s)	148
Sse9I	AATT	6 cut(s)	110, 183, 221, 267, 357, 526
SstI	GAGCTC	1 cut(s)	612
StyD4I	CCNGG	1 cut(s)	209
StyI	CCWWGG	2 cut(s)	253, 552
TaaI	ACNGT	2 cut(s)	25, 176
TaqI	TCGA	2 cut(s)	292, 660
TasI	AATT	6 cut(s)	110, 183, 221, 267, 357, 526
TatI	WGTACW	2 cut(s)	444, 568
TfiI	GAWTC	3 cut(s)	13, 189, 436
TseFI	GTSAC	1 cut(s)	543
TseI	GCWGC	4 cut(s)	584, 614, 617, 620
Tsp45I	GTSAC	1 cut(s)	543
Van91I	CCANNNNNTGG	2 cut(s)	137, 157
VpaK11BI	GGWCC	1 cut(s)	148
XapI	RAATTY	2 cut(s)	110, 221
XmnI	GAANNNNTTC	1 cut(s)	488
ZrmI	AGTACT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.