Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0014946

Physical Location & Seq

Genomic Coordinates Forward (+)

8647898 .. 8650368

Gene Structure 2471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1120100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCTTTGCCAAATCAGCAGACCGTGGATTACCCGAGCTTCAAGCTCGTCATCGTCGGCGATGGTGGAACAGGAAAGACAACCTTTGTGAAGAGACATCTTACTGGTGAATTTGAGAAGAAATATGAACCAACTATTGGTGTGGAGGTTCATCCATTGGACTTTTTCACCAACTGTGGAAAAATTCGATTCTACTGCTGGGATACAGCCGGGCAGGAGAAGTTTGGAGGTCTCAGAGATGGATACTACATCCATGGGCAATGCGCTATAATCATGTTTGATGTTACTGCTCGGTTGACATACAAGAATGTCCCTACATGGCACAGGGATCTTTGCAGGGTCTGTGAAAACATACCCATTGTTCTTTGTGGAAACAAGGTTGATGTGAAGAACAGGCAGGTCAAGGCAAAGCAAGTTACTTTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCAGCTAAGAGCAATTATAACTTCGAGAAGCCTTTCTTGTACCTTGCCAGAAAGCTTGCAGGGGATCCTAACTTGCATTTTGTTGAATCCCCTGCCTTGGCTCCTCCAGAAGTGCACATTGATCTTGCTGCACAGCAACAGCACGAGGCTGAACTTGCTGCAGCTGCTAGTCAGCCCCTTCCGGATGATGATGATGAAGCATTCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005794 GO:0006403 GO:0006405 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0010035 GO:0010038 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0031503 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042254 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046686 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 ko05166 ko05169 map03008 map03013 map05166 map05169

Pfam Domains

Protein Families

Ras

Protein Analysis

222

Amino Acids

25.1

Weight (kDa)

6.45

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	13 - 138	1.1e-10	ADP-ribosylation factor family
Ras	PF00071	15 - 171	1.2e-47	Ras family
Roc	PF08477	15 - 128	2.9e-30	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55190
fragaria_vesca	FvH4_2g29670
malus_domestica	MD08G1143300.v1.1 MD15G1120100.v1.1
prunus_persica	Prupe.1G472900_v2.0.a1 Prupe.7G237800_v2.0.a1
pyrus_communis	pycom08g12200 pycom15g10820
rosa_chinensis	RchiOBHm_Chr6g0298651
rosa_laevigata	RLG00000011496
rosa_multiflora	Rmu_sc0007345.1_g000002 Rmu_sc0008099.1_g000009
rosa_rugosa	Rorug06G0281800
rosa_samantha	Rh6BG401200 Rh6DG393800
rosa_wichuraiana	Rw6G034400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	474
Acc36I	ACCTGC	1 cut(s)	388
AccB7I	CCANNNNNTGG	1 cut(s)	137
AccIII	TCCGGA	1 cut(s)	637
AclWI	GGATC	3 cut(s)	336, 515, 528
AcsI	RAATTY	2 cut(s)	110, 183
AfaI	GTAC	2 cut(s)	446, 497
AfiI	CCNNNNNNNGG	2 cut(s)	137, 553
AgsI	TTSAA	2 cut(s)	43, 542
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	5 cut(s)	39, 46, 461, 511, 620
AluI	AGCT	5 cut(s)	39, 46, 461, 511, 620
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	2 cut(s)	88, 236
Alw44I	GTGCAC	1 cut(s)	569
AlwI	GGATC	3 cut(s)	336, 515, 528
AlwNI	CAGNNNCTG	1 cut(s)	342
Ama87I	CYCGRG	1 cut(s)	34
Aor13HI	TCCGGA	1 cut(s)	637
ApaLI	GTGCAC	1 cut(s)	569
ApeKI	GCWGC	4 cut(s)	584, 614, 617, 620
ApoI	RAATTY	2 cut(s)	110, 183
Asp700I	GAANNNNTTC	1 cut(s)	488
AspLEI	GCGC	1 cut(s)	266
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	2 cut(s)	119, 160
AvaI	CYCGRG	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	573
BamHI	GGATCC	1 cut(s)	520
BauI	CACGAG	1 cut(s)	599
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	4 cut(s)	571, 601, 607, 629
BccI	CCATC	2 cut(s)	56, 233
BcgI	CGANNNNNNTGC	2 cut(s)	177, 211
BciVI	GTATCC	2 cut(s)	196, 236
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	2 cut(s)	88, 236
BfaI	CTAG	1 cut(s)	624
BfmI	CTRYAG	2 cut(s)	440, 615
BfuAI	ACCTGC	1 cut(s)	388
BfuI	GTATCC	2 cut(s)	196, 236
BisI	GCNGC	4 cut(s)	585, 615, 618, 621
BlsI	GCNGC	4 cut(s)	586, 616, 619, 622
BmcAI	AGTACT	1 cut(s)	446
Bme1390I	CCNGG	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	522, 558
BmrFI	CCNGG	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	546
BpuMI	CCSGG	1 cut(s)	211
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	3 cut(s)	24, 253, 552
BsaWI	WCCGGW	1 cut(s)	637
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 553
Bse1I	ACTGG	1 cut(s)	109
Bse3DI	GCAATG	1 cut(s)	266
BseAI	TCCGGA	1 cut(s)	637
BseDI	CCNNGG	3 cut(s)	24, 253, 552
BseGI	GGATG	3 cut(s)	151, 249, 646
BseLI	CCNNNNNNNGG	2 cut(s)	137, 553
BseMI	GCAATG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	247
BseNI	ACTGG	1 cut(s)	109
BseRI	GAGGAG	1 cut(s)	549
BseSI	GKGCMC	1 cut(s)	573
BseXI	GCAGC	4 cut(s)	571, 601, 607, 629
BseYI	CCCAGC	1 cut(s)	198
BsgI	GTGCAG	1 cut(s)	570
BsiHKAI	GWGCWC	1 cut(s)	573
BsiHKCI	CYCGRG	1 cut(s)	34
BsiSI	CCGG	2 cut(s)	210, 638
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	2 cut(s)	137, 553
BsmAI	GTCTC	2 cut(s)	88, 236
BsmFI	GGGAC	1 cut(s)	296
BsmI	GAATGC	1 cut(s)	656
Bso31I	GGTCTC	1 cut(s)	236
BsoBI	CYCGRG	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp13I	TCCGGA	1 cut(s)	637
Bsp143I	GATC	3 cut(s)	328, 520, 577
Bsp19I	CCATGG	1 cut(s)	253
BspCNI	CTCAG	1 cut(s)	246
BspEI	TCCGGA	1 cut(s)	637
BspLI	GGNNCC	2 cut(s)	522, 558
BspMAI	CTGCAG	2 cut(s)	444, 619
BspMI	ACCTGC	1 cut(s)	388
BspPI	GGATC	3 cut(s)	336, 515, 528
BspTNI	GGTCTC	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	3 cut(s)	24, 253, 552
BssMI	GATC	3 cut(s)	328, 520, 577
BssSI	CACGAG	1 cut(s)	599
BssT1I	CCWWGG	2 cut(s)	253, 552
Bst2BI	CACGAG	1 cut(s)	599
Bst4CI	ACNGT	2 cut(s)	25, 176
Bst6I	CTCTTC	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	2 cut(s)	233, 462
BstDSI	CCRYGG	2 cut(s)	24, 253
BstF5I	GGATG	3 cut(s)	151, 249, 646
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	3 cut(s)	331, 523, 580
BstMAI	GTCTC	2 cut(s)	88, 236
BstMBI	GATC	3 cut(s)	328, 520, 577
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 611, 620
BstSCI	CCNGG	1 cut(s)	209
BstSFI	CTRYAG	2 cut(s)	440, 615
BstSLI	GKGCMC	1 cut(s)	573
BstV1I	GCAGC	4 cut(s)	571, 601, 607, 629
BstX2I	RGATCY	2 cut(s)	328, 520
BstYI	RGATCY	2 cut(s)	328, 520
BsuI	GTATCC	2 cut(s)	196, 236
BtgI	CCRYGG	2 cut(s)	24, 253
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	3 cut(s)	151, 249, 646
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	1 cut(s)	513
CaiI	CAGNNNCTG	1 cut(s)	342
CfoI	GCGC	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	445, 496
CviAII	CATG	3 cut(s)	254, 274, 318
CviQI	GTAC	2 cut(s)	445, 496
DdeI	CTNAG	2 cut(s)	233, 462
DpnI	GATC	3 cut(s)	330, 522, 579
DpnII	GATC	3 cut(s)	328, 520, 577
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco130I	CCWWGG	2 cut(s)	253, 552
Eco31I	GGTCTC	1 cut(s)	236
Eco32I	GATATC	1 cut(s)	456
Eco88I	CYCGRG	1 cut(s)	34
EcoRV	GATATC	1 cut(s)	456
EcoT14I	CCWWGG	2 cut(s)	253, 552
ErhI	CCWWGG	2 cut(s)	253, 552
FaeI	CATG	3 cut(s)	257, 277, 321
FaiI	YATR	9 cut(s)	126, 255, 269, 275, 301, 319, 353, 450, 474
FalI	AAGNNNNNCTT	4 cut(s)	68, 100, 476, 508
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	3 cut(s)	253, 273, 317
Fnu4HI	GCNGC	4 cut(s)	585, 615, 618, 621
FokI	GGATG	3 cut(s)	138, 236, 653
Fsp4HI	GCNGC	4 cut(s)	585, 615, 618, 621
FspBI	CTAG	1 cut(s)	624
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	4 cut(s)	585, 615, 618, 621
GsaI	CCCAGC	1 cut(s)	202
GsuI	CTGGAG	1 cut(s)	546
HapII	CCGG	2 cut(s)	210, 638
HhaI	GCGC	1 cut(s)	266
Hin1II	CATG	3 cut(s)	257, 277, 321
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	3 cut(s)	189, 436, 542
HpaII	CCGG	2 cut(s)	210, 638
HphI	GGTGA	2 cut(s)	119, 160
Hpy166II	GTNNAC	2 cut(s)	297, 571
Hpy188I	TCNGA	1 cut(s)	236
Hpy188III	TCNNGA	3 cut(s)	481, 563, 638
Hpy8I	GTNNAC	2 cut(s)	297, 571
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	644
HpyCH4III	ACNGT	2 cut(s)	25, 176
HpyCH4V	TGCA	7 cut(s)	336, 442, 515, 532, 571, 587, 617
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 611, 620
HpyF3I	CTNAG	2 cut(s)	233, 462
Hsp92II	CATG	3 cut(s)	257, 277, 321
HspAI	GCGC	1 cut(s)	264
Kpn2I	TCCGGA	1 cut(s)	637
Kzo9I	GATC	3 cut(s)	328, 520, 577
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	4 cut(s)	571, 601, 607, 629
MaeI	CTAG	1 cut(s)	624
MaeIII	GTNAC	2 cut(s)	283, 415
MalI	GATC	3 cut(s)	330, 522, 579
MboI	GATC	3 cut(s)	328, 520, 577
MboII	GAAGA	5 cut(s)	103, 130, 400, 442, 445
MflI	RGATCY	2 cut(s)	328, 520
MhlI	GDGCHC	1 cut(s)	573
MluCI	AATT	3 cut(s)	110, 183, 469
MnlI	CCTC	4 cut(s)	139, 221, 570, 595
MroI	TCCGGA	1 cut(s)	637
MroXI	GAANNNNTTC	1 cut(s)	488
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	2 cut(s)	210, 638
MspR9I	CCNGG	1 cut(s)	211
Mva1269I	GAATGC	1 cut(s)	656
MwoI	GCNNNNNNNGC	3 cut(s)	16, 611, 620
NciI	CCSGG	1 cut(s)	211
NcoI	CCATGG	1 cut(s)	253
NdeII	GATC	3 cut(s)	328, 520, 577
NlaIII	CATG	3 cut(s)	257, 277, 321
NlaIV	GGNNCC	2 cut(s)	522, 558
PctI	GAATGC	1 cut(s)	656
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	3 cut(s)	189, 436, 542
PflMI	CCANNNNNTGG	1 cut(s)	137
PkrI	GCNGC	4 cut(s)	586, 616, 619, 622
PsiI	TTATAA	1 cut(s)	474
PspFI	CCCAGC	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	522, 558
PstI	CTGCAG	2 cut(s)	444, 619
PstNI	CAGNNNCTG	1 cut(s)	342
PsuI	RGATCY	2 cut(s)	328, 520
PvuII	CAGCTG	1 cut(s)	620
RsaI	GTAC	2 cut(s)	446, 497
RsaNI	GTAC	2 cut(s)	445, 496
SatI	GCNGC	4 cut(s)	585, 615, 618, 621
Sau3AI	GATC	3 cut(s)	328, 520, 577
ScaI	AGTACT	1 cut(s)	446
ScrFI	CCNGG	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	573
SfcI	CTRYAG	2 cut(s)	440, 615
Sse9I	AATT	3 cut(s)	110, 183, 469
SspMI	CTAG	1 cut(s)	624
StyD4I	CCNGG	1 cut(s)	209
StyI	CCWWGG	2 cut(s)	253, 552
TaaI	ACNGT	2 cut(s)	25, 176
TaqI	TCGA	3 cut(s)	187, 480, 660
TasI	AATT	3 cut(s)	110, 183, 469
TatI	WGTACW	1 cut(s)	444
TfiI	GAWTC	3 cut(s)	189, 436, 542
TseI	GCWGC	4 cut(s)	584, 614, 617, 620
TspDTI	ATGAA	3 cut(s)	140, 141, 666
Van91I	CCANNNNNTGG	1 cut(s)	137
VneI	GTGCAC	1 cut(s)	569
XapI	RAATTY	2 cut(s)	110, 183
XmnI	GAANNNNTTC	1 cut(s)	488
XspI	CTAG	1 cut(s)	624
ZrmI	AGTACT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.