Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0014946

Physical Location & Seq

Genomic Coordinates Forward (+)

7271772 .. 7274179

Gene Structure 2408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g10820.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCTTTGCCGAATCAGCAGACCGTGGATTACCCGAGCTTCAAGCTCGTCATCGTCGGCGATGGTGGAACAGGAAAGACAACCTTTGTGAAGAGACATCTTACTGGTGAATTTGAGAAGAAATATGAACCAACTATTGGTGTGGAGGTTCATCCATTGGACTTTTTCACCAACTGTGGAAAAATTCGATTCTACTGCTGGGATACGGCCGGGCAGGAGAAGTTTGGAGGTCTTAGAGATGGATACTACATCCATGGGCAATGCGCTATAATCATGTTTGATGTTACTGCTCGGTTGACATACAAGAATGTTCCTACATGGCACAGGGATCTTTGCAGAGTGTGTGAAAACATACCCATTGTTCTTTGTGGAAACAAGGTTGATGTGAAGAACAGGCAGGTCAAGGCAAAGCAAGTTACTTTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCTGCTAAGAGCAATTATAACTTCGAGAAGCCTTTCTTGTACCTTGCCAGAAAGCTTGCAGGGGATCCTAACTTGCATTTTGTCGAATCCCCCGCCTTGGCTCCTCCAGAAGTGCACATTGATCTTGCTGCACAACAACAGCACGAGGCTGAGCTTGCTGCAGCTGCTAGTCAGCCCCTTCCTGATGATGATGATGAAGCATTCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005794 GO:0006403 GO:0006405 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0010035 GO:0010038 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0031503 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042254 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046686 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 ko05166 ko05169 map03008 map03013 map05166 map05169

Pfam Domains

Protein Families

Ras

Protein Analysis

222

Amino Acids

25.1

Weight (kDa)

6.45

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55190
fragaria_vesca	FvH4_2g29670
malus_domestica	MD08G1143300.v1.1 MD15G1120100.v1.1
prunus_persica	Prupe.1G472900_v2.0.a1 Prupe.7G237800_v2.0.a1
pyrus_communis	pycom08g12200 pycom15g10820
rosa_chinensis	RchiOBHm_Chr6g0298651
rosa_laevigata	RLG00000011496
rosa_multiflora	Rmu_sc0007345.1_g000002 Rmu_sc0008099.1_g000009
rosa_rugosa	Rorug06G0281800
rosa_samantha	Rh6BG401200 Rh6DG393800
rosa_wichuraiana	Rw6G034400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	474
Acc36I	ACCTGC	1 cut(s)	388
AccB7I	CCANNNNNTGG	1 cut(s)	137
AciI	CCGC	1 cut(s)	549
AclWI	GGATC	3 cut(s)	336, 515, 528
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	2 cut(s)	110, 183
AfaI	GTAC	2 cut(s)	446, 497
AfiI	CCNNNNNNNGG	2 cut(s)	137, 553
AgsI	TTSAA	1 cut(s)	43
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	5 cut(s)	39, 46, 511, 610, 620
AluI	AGCT	5 cut(s)	39, 46, 511, 610, 620
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	1 cut(s)	88
Alw44I	GTGCAC	1 cut(s)	569
AlwI	GGATC	3 cut(s)	336, 515, 528
Ama87I	CYCGRG	1 cut(s)	34
AoxI	GGCC	1 cut(s)	207
ApaLI	GTGCAC	1 cut(s)	569
ApeKI	GCWGC	4 cut(s)	584, 614, 617, 620
ApoI	RAATTY	2 cut(s)	110, 183
Asp700I	GAANNNNTTC	1 cut(s)	488
AspLEI	GCGC	1 cut(s)	266
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	2 cut(s)	119, 160
AvaI	CYCGRG	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	573
BamHI	GGATCC	1 cut(s)	520
BauI	CACGAG	1 cut(s)	599
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	4 cut(s)	571, 601, 607, 629
BccI	CCATC	2 cut(s)	56, 233
BceAI	ACGGC	1 cut(s)	222
BcgI	CGANNNNNNTGC	2 cut(s)	177, 211
BciVI	GTATCC	2 cut(s)	196, 236
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	1 cut(s)	624
BfmI	CTRYAG	2 cut(s)	440, 615
BfuAI	ACCTGC	1 cut(s)	388
BfuI	GTATCC	2 cut(s)	196, 236
BisI	GCNGC	4 cut(s)	585, 615, 618, 621
BlpI	GCTNAGC	1 cut(s)	606
BlsI	GCNGC	4 cut(s)	586, 616, 619, 622
BmcAI	AGTACT	1 cut(s)	446
Bme1390I	CCNGG	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	522, 558
BmrFI	CCNGG	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	546
Bpu1102I	GCTNAGC	1 cut(s)	606
BpuMI	CCSGG	1 cut(s)	211
BsaJI	CCNNGG	3 cut(s)	24, 253, 552
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 553
Bse1I	ACTGG	1 cut(s)	109
Bse3DI	GCAATG	1 cut(s)	266
BseDI	CCNNGG	3 cut(s)	24, 253, 552
BseGI	GGATG	2 cut(s)	151, 249
BseLI	CCNNNNNNNGG	2 cut(s)	137, 553
BseMI	GCAATG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	597
BseNI	ACTGG	1 cut(s)	109
BseRI	GAGGAG	1 cut(s)	549
BseSI	GKGCMC	1 cut(s)	573
BseX3I	CGGCCG	1 cut(s)	207
BseXI	GCAGC	4 cut(s)	571, 601, 607, 629
BseYI	CCCAGC	1 cut(s)	198
BsgI	GTGCAG	1 cut(s)	570
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	209
BsiEI	CGRYCG	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	573
BsiHKCI	CYCGRG	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	210
BslI	CCNNNNNNNGG	2 cut(s)	137, 553
BsmAI	GTCTC	1 cut(s)	88
BsmI	GAATGC	1 cut(s)	656
BsnI	GGCC	1 cut(s)	209
BsoBI	CYCGRG	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp143I	GATC	3 cut(s)	328, 520, 577
Bsp1720I	GCTNAGC	1 cut(s)	606
Bsp19I	CCATGG	1 cut(s)	253
BspACI	CCGC	1 cut(s)	549
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	598
BspLI	GGNNCC	2 cut(s)	522, 558
BspMAI	CTGCAG	2 cut(s)	444, 619
BspMI	ACCTGC	1 cut(s)	388
BspPI	GGATC	3 cut(s)	336, 515, 528
BsrDI	GCAATG	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	3 cut(s)	24, 253, 552
BssMI	GATC	3 cut(s)	328, 520, 577
BssSI	CACGAG	1 cut(s)	599
BssT1I	CCWWGG	2 cut(s)	253, 552
Bst2BI	CACGAG	1 cut(s)	599
Bst4CI	ACNGT	2 cut(s)	25, 176
Bst6I	CTCTTC	1 cut(s)	86
BstC8I	GCNNGC	2 cut(s)	513, 612
BstDEI	CTNAG	3 cut(s)	233, 462, 606
BstDSI	CCRYGG	2 cut(s)	24, 253
BstF5I	GGATG	2 cut(s)	151, 249
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	3 cut(s)	331, 523, 580
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	3 cut(s)	328, 520, 577
BstMCI	CGRYCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 611, 620
BstSCI	CCNGG	1 cut(s)	209
BstSFI	CTRYAG	2 cut(s)	440, 615
BstSLI	GKGCMC	1 cut(s)	573
BstV1I	GCAGC	4 cut(s)	571, 601, 607, 629
BstX2I	RGATCY	2 cut(s)	328, 520
BstYI	RGATCY	2 cut(s)	328, 520
BstZI	CGGCCG	1 cut(s)	207
BsuI	GTATCC	2 cut(s)	196, 236
BsuRI	GGCC	1 cut(s)	209
BtgI	CCRYGG	2 cut(s)	24, 253
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	151, 249
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	2 cut(s)	513, 612
CfoI	GCGC	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	445, 496
CviAII	CATG	3 cut(s)	254, 274, 318
CviQI	GTAC	2 cut(s)	445, 496
DdeI	CTNAG	3 cut(s)	233, 462, 606
DpnI	GATC	3 cut(s)	330, 522, 579
DpnII	GATC	3 cut(s)	328, 520, 577
EaeI	YGGCCR	1 cut(s)	207
EagI	CGGCCG	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
EclXI	CGGCCG	1 cut(s)	207
Eco130I	CCWWGG	2 cut(s)	253, 552
Eco32I	GATATC	1 cut(s)	456
Eco52I	CGGCCG	1 cut(s)	207
Eco88I	CYCGRG	1 cut(s)	34
EcoRV	GATATC	1 cut(s)	456
EcoT14I	CCWWGG	2 cut(s)	253, 552
ErhI	CCWWGG	2 cut(s)	253, 552
FaeI	CATG	3 cut(s)	257, 277, 321
FaiI	YATR	9 cut(s)	126, 255, 269, 275, 301, 319, 353, 450, 474
FalI	AAGNNNNNCTT	4 cut(s)	68, 100, 476, 508
FatI	CATG	3 cut(s)	253, 273, 317
FauI	CCCGC	1 cut(s)	556
Fnu4HI	GCNGC	4 cut(s)	585, 615, 618, 621
FokI	GGATG	2 cut(s)	138, 236
Fsp4HI	GCNGC	4 cut(s)	585, 615, 618, 621
FspBI	CTAG	1 cut(s)	624
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	4 cut(s)	585, 615, 618, 621
GsaI	CCCAGC	1 cut(s)	202
GsuI	CTGGAG	1 cut(s)	546
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	1 cut(s)	210
HhaI	GCGC	1 cut(s)	266
Hin1II	CATG	3 cut(s)	257, 277, 321
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	4 cut(s)	13, 189, 436, 542
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	2 cut(s)	119, 160
Hpy166II	GTNNAC	2 cut(s)	297, 571
Hpy188III	TCNNGA	3 cut(s)	481, 563, 638
Hpy8I	GTNNAC	2 cut(s)	297, 571
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	644
HpyCH4III	ACNGT	2 cut(s)	25, 176
HpyCH4V	TGCA	7 cut(s)	336, 442, 515, 532, 571, 587, 617
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 611, 620
HpyF3I	CTNAG	3 cut(s)	233, 462, 606
Hsp92II	CATG	3 cut(s)	257, 277, 321
HspAI	GCGC	1 cut(s)	264
Kzo9I	GATC	3 cut(s)	328, 520, 577
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	4 cut(s)	571, 601, 607, 629
MaeI	CTAG	1 cut(s)	624
MaeIII	GTNAC	2 cut(s)	283, 415
MalI	GATC	3 cut(s)	330, 522, 579
MboI	GATC	3 cut(s)	328, 520, 577
MboII	GAAGA	5 cut(s)	103, 130, 400, 442, 445
MflI	RGATCY	2 cut(s)	328, 520
MhlI	GDGCHC	1 cut(s)	573
MluCI	AATT	3 cut(s)	110, 183, 469
MnlI	CCTC	4 cut(s)	139, 221, 570, 595
MroXI	GAANNNNTTC	1 cut(s)	488
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	211
Mva1269I	GAATGC	1 cut(s)	656
MwoI	GCNNNNNNNGC	3 cut(s)	16, 611, 620
NciI	CCSGG	1 cut(s)	211
NcoI	CCATGG	1 cut(s)	253
NdeII	GATC	3 cut(s)	328, 520, 577
NlaIII	CATG	3 cut(s)	257, 277, 321
NlaIV	GGNNCC	2 cut(s)	522, 558
PctI	GAATGC	1 cut(s)	656
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	4 cut(s)	13, 189, 436, 542
PflMI	CCANNNNNTGG	1 cut(s)	137
PkrI	GCNGC	4 cut(s)	586, 616, 619, 622
PsiI	TTATAA	1 cut(s)	474
PspFI	CCCAGC	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	522, 558
PstI	CTGCAG	2 cut(s)	444, 619
PsuI	RGATCY	2 cut(s)	328, 520
PvuII	CAGCTG	1 cut(s)	620
RsaI	GTAC	2 cut(s)	446, 497
RsaNI	GTAC	2 cut(s)	445, 496
SatI	GCNGC	4 cut(s)	585, 615, 618, 621
Sau3AI	GATC	3 cut(s)	328, 520, 577
ScaI	AGTACT	1 cut(s)	446
ScrFI	CCNGG	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	573
SfcI	CTRYAG	2 cut(s)	440, 615
Sse9I	AATT	3 cut(s)	110, 183, 469
SsiI	CCGC	1 cut(s)	549
SspMI	CTAG	1 cut(s)	624
StyD4I	CCNGG	1 cut(s)	209
StyI	CCWWGG	2 cut(s)	253, 552
TaaI	ACNGT	2 cut(s)	25, 176
TaqI	TCGA	4 cut(s)	187, 480, 540, 660
TasI	AATT	3 cut(s)	110, 183, 469
TatI	WGTACW	1 cut(s)	444
TfiI	GAWTC	4 cut(s)	13, 189, 436, 542
TseI	GCWGC	4 cut(s)	584, 614, 617, 620
TspDTI	ATGAA	3 cut(s)	140, 141, 666
Van91I	CCANNNNNTGG	1 cut(s)	137
VneI	GTGCAC	1 cut(s)	569
XapI	RAATTY	2 cut(s)	110, 183
XmnI	GAANNNNTTC	1 cut(s)	488
XspI	CTAG	1 cut(s)	624
ZrmI	AGTACT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.