Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007345.1

Orthogroup ID

OG0014946

Physical Location & Seq

Genomic Coordinates Reverse (-)

8426 .. 9504

Gene Structure 1079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007345.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ctggtggttctttctgaactaaagatatccgtcaatgcagggaaaacaacctttgtgaagagacatcttactggtgaatttgagaagaaatatgaacctactattggtgttgaggtccatccattggactttttcaccaactgcggaaaaattcgtttctactgctgggatactgctgggcaagagaaatttggtggtcttagagatggatactatatccatgggcaatgtgcaattatcatgtttgatgttactgcccgattgacatacaagaatgttccaacatggcacagggatctttgcagggtctgtgaaaacataccaattgtgctttgtggaaacaaagttgatgtgaagaacaggcaggtcaaggccaagcaggtcactttccacaggaagaagaatctgcagtactatgaaatatcagcaaagagcaattataactttgagaagccttttctataccttgccaggaagcttgcaggggatgctaatctgcattttgtcgaatcccctgctctggctcctccagaggttcacatagatctggctgcacagcagcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005794 GO:0006403 GO:0006405 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0010035 GO:0010038 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0031503 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042254 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046686 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 ko05166 ko05169 map03008 map03013 map05166 map05169

Pfam Domains

Protein Families

Ras

Protein Analysis

188

Amino Acids

21.58

Weight (kDa)

9.08

Isoelectric Point (pI)

32.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55190
fragaria_vesca	FvH4_2g29670
malus_domestica	MD08G1143300.v1.1 MD15G1120100.v1.1
prunus_persica	Prupe.1G472900_v2.0.a1 Prupe.7G237800_v2.0.a1
pyrus_communis	pycom08g12200 pycom15g10820
rosa_chinensis	RchiOBHm_Chr6g0298651
rosa_laevigata	RLG00000011496
rosa_multiflora	Rmu_sc0007345.1_g000002 Rmu_sc0008099.1_g000009
rosa_rugosa	Rorug06G0281800
rosa_samantha	Rh6BG401200 Rh6DG393800
rosa_wichuraiana	Rw6G034400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
Acc36I	ACCTGC	2 cut(s)	355, 370
AccB7I	CCANNNNNTGG	1 cut(s)	124
AciI	CCGC	1 cut(s)	144
AclWI	GGATC	1 cut(s)	303
AcsI	RAATTY	3 cut(s)	77, 150, 188
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	3 cut(s)	104, 124, 520
AjnI	CCWGG	1 cut(s)	470
AjuI	GAANNNNNNNTTGG	2 cut(s)	87, 119
AluBI	AGCT	1 cut(s)	478
AluI	AGCT	1 cut(s)	478
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	1 cut(s)	303
AlwNI	CAGNNNCTG	1 cut(s)	309
AoxI	GGCC	1 cut(s)	372
ApeKI	GCWGC	2 cut(s)	551, 559
ApoI	RAATTY	3 cut(s)	77, 150, 188
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	86, 127
AvaII	GGWCC	1 cut(s)	115
BbvI	GCAGC	1 cut(s)	538
BccI	CCATC	2 cut(s)	126, 200
BcgI	CGANNNNNNTGC	2 cut(s)	497, 531
BciT130I	CCWGG	1 cut(s)	472
BciVI	GTATCC	2 cut(s)	163, 203
BcoDI	GTCTC	1 cut(s)	55
BfmI	CTRYAG	1 cut(s)	407
BfuAI	ACCTGC	2 cut(s)	355, 370
BfuI	GTATCC	2 cut(s)	163, 203
BglII	AGATCT	1 cut(s)	544
BisI	GCNGC	2 cut(s)	552, 560
BlsI	GCNGC	2 cut(s)	553, 561
BmcAI	AGTACT	1 cut(s)	413
Bme1390I	CCNGG	1 cut(s)	472
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	525
BmrFI	CCNGG	1 cut(s)	472
BmsI	GCATC	1 cut(s)	478
BpmI	CTGGAG	1 cut(s)	513
BsaBI	GATNNNNATC	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 124, 520
Bse1I	ACTGG	1 cut(s)	76
Bse3DI	GCAATG	1 cut(s)	233
Bse8I	GATNNNNATC	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	472
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	2 cut(s)	118, 493
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	3 cut(s)	104, 124, 520
BseMI	GCAATG	1 cut(s)	233
BseNI	ACTGG	1 cut(s)	76
BseRI	GAGGAG	1 cut(s)	516
BseXI	GCAGC	1 cut(s)	538
BseYI	CCCAGC	2 cut(s)	165, 176
BsgI	GTGCAG	1 cut(s)	537
BshFI	GGCC	1 cut(s)	374
BslI	CCNNNNNNNGG	3 cut(s)	104, 124, 520
BsmAI	GTCTC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	374
Bsp143I	GATC	2 cut(s)	295, 544
Bsp19I	CCATGG	1 cut(s)	220
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	1 cut(s)	374
BspLI	GGNNCC	1 cut(s)	525
BspMAI	CTGCAG	1 cut(s)	411
BspMI	ACCTGC	2 cut(s)	355, 370
BspPI	GGATC	1 cut(s)	303
BsrDI	GCAATG	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	2 cut(s)	295, 544
BssT1I	CCWWGG	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	472
Bst6I	CTCTTC	1 cut(s)	53
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstC8I	GCNNGC	1 cut(s)	480
BstDEI	CTNAG	1 cut(s)	200
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	2 cut(s)	118, 493
BstKTI	GATC	2 cut(s)	298, 547
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	2 cut(s)	295, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstNI	CCWGG	1 cut(s)	472
BstSCI	CCNGG	1 cut(s)	470
BstSFI	CTRYAG	1 cut(s)	407
BstV1I	GCAGC	1 cut(s)	538
BstX2I	RGATCY	2 cut(s)	295, 544
BstYI	RGATCY	2 cut(s)	295, 544
BsuI	GTATCC	2 cut(s)	163, 203
BsuRI	GGCC	1 cut(s)	374
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	118, 493
BveI	ACCTGC	2 cut(s)	355, 370
Cac8I	GCNNGC	1 cut(s)	480
CaiI	CAGNNNCTG	1 cut(s)	309
Cfr13I	GGNCC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	3 cut(s)	221, 241, 285
CviJI	RGCY	5 cut(s)	374, 454, 478, 524, 551
CviKI_1	RGCY	5 cut(s)	374, 454, 478, 524, 551
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	1 cut(s)	200
DpnI	GATC	2 cut(s)	297, 546
DpnII	GATC	2 cut(s)	295, 544
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	220
Eco32I	GATATC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	470
EcoRV	GATATC	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	3 cut(s)	224, 244, 288
FatI	CATG	3 cut(s)	220, 240, 284
Fnu4HI	GCNGC	2 cut(s)	552, 560
FokI	GGATG	2 cut(s)	105, 500
Fsp4HI	GCNGC	2 cut(s)	552, 560
GluI	GCNGC	2 cut(s)	552, 560
GsaI	CCCAGC	2 cut(s)	169, 180
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	1 cut(s)	374
Hin1II	CATG	3 cut(s)	224, 244, 288
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	2 cut(s)	403, 509
HphI	GGTGA	2 cut(s)	86, 127
Hpy166II	GTNNAC	1 cut(s)	538
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	1 cut(s)	530
Hpy8I	GTNNAC	1 cut(s)	538
HpyCH4V	TGCA	7 cut(s)	38, 233, 303, 409, 482, 499, 554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpyF3I	CTNAG	1 cut(s)	200
Hsp92II	CATG	3 cut(s)	224, 244, 288
Kzo9I	GATC	2 cut(s)	295, 544
LmnI	GCTCC	1 cut(s)	529
Lsp1109I	GCAGC	1 cut(s)	538
LweI	GCATC	1 cut(s)	478
MaeIII	GTNAC	2 cut(s)	250, 382
MalI	GATC	2 cut(s)	297, 546
MboI	GATC	2 cut(s)	295, 544
MboII	GAAGA	5 cut(s)	70, 97, 367, 409, 412
MfeI	CAATTG	1 cut(s)	324
MflI	RGATCY	2 cut(s)	295, 544
MluCI	AATT	6 cut(s)	77, 150, 188, 234, 324, 436
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	3 cut(s)	106, 526, 537
MspR9I	CCNGG	1 cut(s)	472
MunI	CAATTG	1 cut(s)	324
MvaI	CCWGG	1 cut(s)	472
MwoI	GCNNNNNNNGC	1 cut(s)	488
NcoI	CCATGG	1 cut(s)	220
NdeII	GATC	2 cut(s)	295, 544
NlaIII	CATG	3 cut(s)	224, 244, 288
NlaIV	GGNNCC	1 cut(s)	525
NmuCI	GTSAC	1 cut(s)	382
PfeI	GAWTC	2 cut(s)	403, 509
PflMI	CCANNNNNTGG	1 cut(s)	124
PkrI	GCNGC	2 cut(s)	553, 561
PsiI	TTATAA	1 cut(s)	441
Psp6I	CCWGG	1 cut(s)	470
PspFI	CCCAGC	2 cut(s)	165, 176
PspGI	CCWGG	1 cut(s)	470
PspN4I	GGNNCC	1 cut(s)	525
PspPI	GGNCC	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	411
PstNI	CAGNNNCTG	1 cut(s)	309
PsuI	RGATCY	2 cut(s)	295, 544
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SatI	GCNGC	2 cut(s)	552, 560
Sau3AI	GATC	2 cut(s)	295, 544
Sau96I	GGNCC	1 cut(s)	115
ScaI	AGTACT	1 cut(s)	413
ScrFI	CCNGG	1 cut(s)	472
SetI	ASST	8 cut(s)	53, 100, 117, 369, 384, 468, 480, 537
SfaNI	GCATC	1 cut(s)	478
SfcI	CTRYAG	1 cut(s)	407
SinI	GGWCC	1 cut(s)	115
Sse9I	AATT	6 cut(s)	77, 150, 188, 234, 324, 436
SsiI	CCGC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	470
StyI	CCWWGG	1 cut(s)	220
TaqI	TCGA	1 cut(s)	507
TasI	AATT	6 cut(s)	77, 150, 188, 234, 324, 436
TatI	WGTACW	1 cut(s)	411
TfiI	GAWTC	2 cut(s)	403, 509
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	2 cut(s)	551, 559
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	2 cut(s)	108, 432
TspGWI	ACGGA	1 cut(s)	19
Van91I	CCANNNNNTGG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	3 cut(s)	77, 150, 188
ZrmI	AGTACT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.