AT5G55640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014185
Physical Location & Seq
Reverse (-)
22533085 .. 22534155
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55640.1

Sequence Viewer

Length: 450 bp
ATGGATACATCTGTAATGCAGACGAATCTTCCCAAGGTAGAAGACAATGATGAATGGGACACTGATGGGTTTGTGATTCCGAGCTTGGAGATTGAAGAAGACAAGGTTAATAATAATAATGATTCAGAAGTTGAAACATCAAAACCTTCTTCTCCTAAGAGTAAAGCTGAAGAAAACATCTACTTAGGACCACATGGAGCTCCTCCTTCGCAGCTACAAGATGGTGGTAGTAACACATCGAGCCGCAAGCAGCGGTTTAAGCAGATGCTCAAGGAAGCAGATCAGAAAATGAGCGGCTCTGGTCGAGAAAACAAAATGGCTAACTTAAGAGAGCTTGTAGGCGGGGGTGCAGGTGCAGAGAAAGGAACTAATATGGGAAAAGGTGTTTCAAGAGACTGGCTTGACCCTCATTGCCATGAATCTCAGTTCGAGAAACGACGACTTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.47

Weight (kDa)

5.14

Isoelectric Point (pI)

60.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55640
fragaria_vesca FvH4_3g29370
malus_domestica MD03G1184300.v1.1 MD11G1201100.v1.1
prunus_persica Prupe.4G242300_v2.0.a1 Prupe.4G242300_v2.0.a1
pyrus_communis pycom11g17350
rosa_chinensis RchiOBHm_Chr5g0053761
rosa_laevigata RLG00000034901
rosa_multiflora Rmu_sc0001759.1_g000025
rosa_roxburghii Rroxscaffold_1G00026830
rosa_rugosa Rorug05G0282400
rosa_samantha Rh5AG352900 Rh5BG364600 Rh5CG389500 Rh5DG379400
rosa_wichuraiana Rw5G033340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 341
Acc36I ACCTGC 1 cut(s) 341
AccBSI CCGCTC 1 cut(s) 294
AciI CCGC 4 cut(s) 244, 253, 294, 342
AcuI CTGAAG 1 cut(s) 189
AflII CTTAAG 1 cut(s) 325
AgsI TTSAA 3 cut(s) 95, 134, 390
AluBI AGCT 5 cut(s) 84, 167, 200, 214, 334
AluI AGCT 5 cut(s) 84, 167, 200, 214, 334
Alw21I GWGCWC 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 387
ApeKI GCWGC 2 cut(s) 211, 250
AspS9I GGNCC 1 cut(s) 188
AvaII GGWCC 1 cut(s) 188
BaeI ACNNNNGTAYC 1 cut(s) 30
BanII GRGCYC 1 cut(s) 202
BbsI GAAGAC 2 cut(s) 48, 105
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 2 cut(s) 223, 262
BccI CCATC 2 cut(s) 59, 215
BcoDI GTCTC 1 cut(s) 387
BfrI CTTAAG 1 cut(s) 325
BfuAI ACCTGC 1 cut(s) 341
BisI GCNGC 4 cut(s) 212, 244, 251, 295
BlsI GCNGC 4 cut(s) 213, 245, 252, 296
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmsI GCATC 1 cut(s) 255
BpiI GAAGAC 2 cut(s) 48, 105
BpuEI CTTGAG 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 401
Bse3DI GCAATG 1 cut(s) 409
BseDI CCNNGG 1 cut(s) 33
BseMI GCAATG 1 cut(s) 409
BseMII CTCAG 1 cut(s) 437
BseNI ACTGG 1 cut(s) 401
BseRI GAGGAG 1 cut(s) 192
BseXI GCAGC 2 cut(s) 223, 262
BsgI GTGCAG 2 cut(s) 369, 375
BsiHKAI GWGCWC 1 cut(s) 202
BslFI GGGAC 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 387
BsmFI GGGAC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 1 cut(s) 280
BspACI CCGC 4 cut(s) 244, 253, 294, 342
BspCNI CTCAG 1 cut(s) 436
BspMI ACCTGC 1 cut(s) 341
BspTI CTTAAG 1 cut(s) 325
BsrBI CCGCTC 1 cut(s) 294
BsrDI GCAATG 1 cut(s) 409
BsrI ACTGG 1 cut(s) 401
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 1 cut(s) 280
BssT1I CCWWGG 1 cut(s) 33
BstAFI CTTAAG 1 cut(s) 325
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 3 cut(s) 156, 184, 423
BstKTI GATC 1 cut(s) 283
BstMAI GTCTC 1 cut(s) 387
BstMBI GATC 1 cut(s) 280
BstMWI GCNNNNNNNGC 1 cut(s) 259
BstV1I GCAGC 2 cut(s) 223, 262
BstV2I GAAGAC 2 cut(s) 48, 105
BtsIMutI CAGTG 1 cut(s) 60
BveI ACCTGC 1 cut(s) 341
Cac8I GCNNGC 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 188
CviAII CATG 2 cut(s) 194, 416
CviJI RGCY 9 cut(s) 84, 167, 200, 214, 243, 297, 320, 334, 400
CviKI_1 RGCY 9 cut(s) 84, 167, 200, 214, 243, 297, 320, 334, 400
DdeI CTNAG 3 cut(s) 156, 184, 423
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
Ecl136II GAGCTC 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 188
Eco53kI GAGCTC 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 189
EcoICRI GAGCTC 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 33
EcoT38I GRGCYC 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 2 cut(s) 197, 419
FaiI YATR 4 cut(s) 195, 374, 417, 448
FaqI GGGAC 1 cut(s) 71
FatI CATG 2 cut(s) 193, 415
FauI CCCGC 1 cut(s) 335
Fnu4HI GCNGC 4 cut(s) 212, 244, 251, 295
FriOI GRGCYC 1 cut(s) 202
Fsp4HI GCNGC 4 cut(s) 212, 244, 251, 295
GluI GCNGC 4 cut(s) 212, 244, 251, 295
Hin1II CATG 2 cut(s) 197, 419
HinfI GANTC 4 cut(s) 25, 76, 122, 419
Hpy188I TCNGA 3 cut(s) 81, 127, 285
Hpy188III TCNNGA 3 cut(s) 305, 390, 430
Hpy99I CGWCG 1 cut(s) 441
HpyAV CCTTC 2 cut(s) 156, 216
HpyCH4V TGCA 3 cut(s) 19, 350, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 259
HpyF3I CTNAG 3 cut(s) 156, 184, 423
Hsp92II CATG 2 cut(s) 197, 419
Kzo9I GATC 1 cut(s) 280
LmnI GCTCC 2 cut(s) 197, 205
LpnPI CCDG 3 cut(s) 285, 336, 382
Lsp1109I GCAGC 2 cut(s) 223, 262
LweI GCATC 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 230
MalI GATC 1 cut(s) 282
MbiI CCGCTC 1 cut(s) 294
MboI GATC 1 cut(s) 280
MboII GAAGA 6 cut(s) 20, 53, 107, 110, 141, 182
MhlI GDGCHC 1 cut(s) 202
MnlI CCTC 2 cut(s) 213, 417
MseI TTAA 3 cut(s) 108, 258, 326
MslI CAYNNNNRTG 1 cut(s) 414
MspA1I CMGCKG 1 cut(s) 253
MspCI CTTAAG 1 cut(s) 325
MwoI GCNNNNNNNGC 1 cut(s) 259
NdeII GATC 1 cut(s) 280
NlaIII CATG 2 cut(s) 197, 419
PaqCI CACCTGC 1 cut(s) 341
PfeI GAWTC 4 cut(s) 25, 76, 122, 419
PkrI GCNGC 4 cut(s) 213, 245, 252, 296
Psp124BI GAGCTC 1 cut(s) 202
PspPI GGNCC 1 cut(s) 188
RseI CAYNNNNRTG 1 cut(s) 414
SacI GAGCTC 1 cut(s) 202
SaqAI TTAA 3 cut(s) 108, 258, 326
SatI GCNGC 4 cut(s) 212, 244, 251, 295
Sau3AI GATC 1 cut(s) 280
Sau96I GGNCC 1 cut(s) 188
SduI GDGCHC 1 cut(s) 202
SfaNI GCATC 1 cut(s) 255
SinI GGWCC 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 414
SmlI CTYRAG 2 cut(s) 269, 325
SmoI CTYRAG 2 cut(s) 269, 325
SsiI CCGC 4 cut(s) 244, 253, 294, 342
SstI GAGCTC 1 cut(s) 202
StyI CCWWGG 1 cut(s) 33
TaqI TCGA 3 cut(s) 239, 304, 429
TauI GCSGC 2 cut(s) 246, 297
TfiI GAWTC 4 cut(s) 25, 76, 122, 419
Tru1I TTAA 3 cut(s) 108, 258, 326
Tru9I TTAA 3 cut(s) 108, 258, 326
TscAI CASTG 1 cut(s) 67
TseI GCWGC 2 cut(s) 211, 250
TspDTI ATGAA 2 cut(s) 66, 432
TspRI CASTG 1 cut(s) 67
Vha464I CTTAAG 1 cut(s) 325
VpaK11BI GGWCC 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.