MD11G1201100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0014185
Physical Location & Seq
Reverse (-)
29015006 .. 29016964
1959 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1201100.v1.1.491

Sequence Viewer

Length: 435 bp
ATGGACCCTTCTCCAGTGCGAACCACTCCACCTCTCGAAGAAGAAGATGAGTGGGACACTGATGGATTTGTGATTCCGAGCTTGGTGATTGAAGAGCAAGATAGCAGTAATCACAATGCTCCAACAGTAGAAGCTTCAAAACCACCATCTCCAAAGGCCAAAAAAGAAGAGAAGATCTATTTAGGACCGCACGGGGCTCCTCCTTCGCAATCAAAGCAGCAAGAGGTAAACCCTAGTAGCCGTAAGCAGAAGTTCAAGCAGAAACTGAAGGAAGCAGATAAGAAAAGTACCAGGACAGGCCGAGAGAATAAGTTGGAGAATCTGAGAGAGCTTGTGGGTGGGAAGGGAAGCAGCAGCATGGCAAAGGGTTCTAACAGGGATTGGTTAGACCCACACTGTCACGAGTCTCAGTTTGAGAAGTGGAACACCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.21

Weight (kDa)

6.13

Isoelectric Point (pI)

68.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55640
fragaria_vesca FvH4_3g29370
malus_domestica MD03G1184300.v1.1 MD11G1201100.v1.1
prunus_persica Prupe.4G242300_v2.0.a1 Prupe.4G242300_v2.0.a1
pyrus_communis pycom11g17350
rosa_chinensis RchiOBHm_Chr5g0053761
rosa_laevigata RLG00000034901
rosa_multiflora Rmu_sc0001759.1_g000025
rosa_roxburghii Rroxscaffold_1G00026830
rosa_rugosa Rorug05G0282400
rosa_samantha Rh5AG352900 Rh5BG364600 Rh5CG389500 Rh5DG379400
rosa_wichuraiana Rw5G033340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 188
AcuI CTGAAG 1 cut(s) 287
AdeI CACNNNGTG 1 cut(s) 432
AfaI GTAC 1 cut(s) 289
AgsI TTSAA 3 cut(s) 92, 138, 256
AjnI CCWGG 1 cut(s) 290
AluBI AGCT 3 cut(s) 81, 134, 331
AluI AGCT 3 cut(s) 81, 134, 331
Alw26I GTCTC 1 cut(s) 411
AlwNI CAGNNNCTG 1 cut(s) 265
AoxI GGCC 2 cut(s) 156, 298
ApeKI GCWGC 3 cut(s) 217, 351, 354
AspS9I GGNCC 2 cut(s) 4, 185
AsuHPI GGTGA 1 cut(s) 97
AvaII GGWCC 2 cut(s) 4, 185
BanII GRGCYC 1 cut(s) 199
BauI CACGAG 1 cut(s) 401
BbvI GCAGC 3 cut(s) 229, 363, 366
BccI CCATC 2 cut(s) 56, 154
BceAI ACGGC 1 cut(s) 225
BciT130I CCWGG 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 411
BfaI CTAG 1 cut(s) 234
BglII AGATCT 1 cut(s) 174
BisI GCNGC 3 cut(s) 218, 352, 355
BlsI GCNGC 3 cut(s) 219, 353, 356
Bme1390I CCNGG 1 cut(s) 292
Bme18I GGWCC 2 cut(s) 4, 185
BmgT120I GGNCC 2 cut(s) 4, 185
BmiI GGNNCC 2 cut(s) 6, 198
BmrFI CCNGG 1 cut(s) 292
Bse1I ACTGG 1 cut(s) 14
BseBI CCWGG 1 cut(s) 292
BseMII CTCAG 2 cut(s) 314, 422
BseNI ACTGG 1 cut(s) 14
BseRI GAGGAG 1 cut(s) 189
BseXI GCAGC 3 cut(s) 229, 363, 366
BshFI GGCC 2 cut(s) 158, 300
BslFI GGGAC 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 411
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 2 cut(s) 158, 300
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 1 cut(s) 174
BspACI CCGC 1 cut(s) 188
BspANI GGCC 2 cut(s) 158, 300
BspCNI CTCAG 2 cut(s) 315, 421
BspLI GGNNCC 2 cut(s) 6, 198
BspQI GCTCTTC 1 cut(s) 87
BsrI ACTGG 1 cut(s) 14
BssMI GATC 1 cut(s) 174
BssSI CACGAG 1 cut(s) 401
Bst2BI CACGAG 1 cut(s) 401
Bst2UI CCWGG 1 cut(s) 292
Bst4CI ACNGT 2 cut(s) 127, 398
Bst6I CTCTTC 2 cut(s) 87, 162
BstDEI CTNAG 2 cut(s) 323, 408
BstKTI GATC 1 cut(s) 177
BstMAI GTCTC 1 cut(s) 411
BstMBI GATC 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstNI CCWGG 1 cut(s) 292
BstSCI CCNGG 1 cut(s) 290
BstV1I GCAGC 3 cut(s) 229, 363, 366
BstX2I RGATCY 1 cut(s) 174
BstYI RGATCY 1 cut(s) 174
BsuRI GGCC 2 cut(s) 158, 300
BtsIMutI CAGTG 3 cut(s) 21, 57, 394
CaiI CAGNNNCTG 1 cut(s) 265
Cfr13I GGNCC 2 cut(s) 4, 185
Csp6I GTAC 1 cut(s) 288
CviAII CATG 1 cut(s) 358
CviJI RGCY 7 cut(s) 81, 134, 158, 197, 240, 300, 331
CviKI_1 RGCY 7 cut(s) 81, 134, 158, 197, 240, 300, 331
CviQI GTAC 1 cut(s) 288
DdeI CTNAG 2 cut(s) 323, 408
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
DraIII CACNNNGTG 1 cut(s) 432
Eam1104I CTCTTC 2 cut(s) 87, 162
EarI CTCTTC 2 cut(s) 87, 162
Eco24I GRGCYC 1 cut(s) 199
Eco47I GGWCC 2 cut(s) 4, 185
Eco57I CTGAAG 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 290
EcoT38I GRGCYC 1 cut(s) 199
FaeI CATG 1 cut(s) 361
FaiI YATR 1 cut(s) 359
FaqI GGGAC 1 cut(s) 68
FatI CATG 1 cut(s) 357
Fnu4HI GCNGC 3 cut(s) 218, 352, 355
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 3 cut(s) 218, 352, 355
FspBI CTAG 1 cut(s) 234
GluI GCNGC 3 cut(s) 218, 352, 355
HaeIII GGCC 2 cut(s) 158, 300
Hin1II CATG 1 cut(s) 361
HindIII AAGCTT 1 cut(s) 132
HinfI GANTC 3 cut(s) 73, 319, 404
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 2 cut(s) 78, 324
Hpy188III TCNNGA 2 cut(s) 35, 401
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 4 cut(s) 18, 213, 262, 337
HpyCH4III ACNGT 2 cut(s) 127, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpyF3I CTNAG 2 cut(s) 323, 408
Hsp92II CATG 1 cut(s) 361
Kzo9I GATC 1 cut(s) 174
LguI GCTCTTC 1 cut(s) 87
LmnI GCTCC 2 cut(s) 124, 202
LpnPI CCDG 5 cut(s) 27, 277, 282, 304, 361
Lsp1109I GCAGC 3 cut(s) 229, 363, 366
MaeI CTAG 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 398
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 6 cut(s) 50, 53, 56, 104, 179, 184
MflI RGATCY 1 cut(s) 174
MhlI GDGCHC 1 cut(s) 199
MlyI GAGTC 1 cut(s) 413
MmeI TCCRAC 2 cut(s) 146, 294
MnlI CCTC 3 cut(s) 42, 210, 217
MspR9I CCNGG 1 cut(s) 292
MvaI CCWGG 1 cut(s) 292
MwoI GCNNNNNNNGC 1 cut(s) 214
NdeII GATC 1 cut(s) 174
NlaIII CATG 1 cut(s) 361
NlaIV GGNNCC 2 cut(s) 6, 198
NmeAIII GCCGAG 1 cut(s) 326
NmuCI GTSAC 1 cut(s) 398
PciSI GCTCTTC 1 cut(s) 87
PfeI GAWTC 2 cut(s) 73, 319
PkrI GCNGC 3 cut(s) 219, 353, 356
PleI GAGTC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 412
Psp6I CCWGG 1 cut(s) 290
PspGI CCWGG 1 cut(s) 290
PspN4I GGNNCC 2 cut(s) 6, 198
PspPI GGNCC 2 cut(s) 4, 185
PstNI CAGNNNCTG 1 cut(s) 265
PsuI RGATCY 1 cut(s) 174
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
SapI GCTCTTC 1 cut(s) 87
SatI GCNGC 3 cut(s) 218, 352, 355
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 2 cut(s) 4, 185
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 1 cut(s) 292
SduI GDGCHC 1 cut(s) 199
SetI ASST 5 cut(s) 34, 83, 136, 228, 333
SinI GGWCC 2 cut(s) 4, 185
SsiI CCGC 1 cut(s) 188
SspMI CTAG 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 290
TaaI ACNGT 2 cut(s) 127, 398
TaqI TCGA 1 cut(s) 36
TfiI GAWTC 2 cut(s) 73, 319
TscAI CASTG 3 cut(s) 21, 64, 401
TseFI GTSAC 1 cut(s) 398
TseI GCWGC 3 cut(s) 217, 351, 354
Tsp45I GTSAC 1 cut(s) 398
TspRI CASTG 3 cut(s) 21, 64, 401
VpaK11BI GGWCC 2 cut(s) 4, 185
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.