FvH4_3g29370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014185
Physical Location & Seq
Forward (+)
22471572 .. 22473976
2405 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29370.t1

Sequence Viewer

Length: 444 bp
ATGGACCCTTCTCCAGTTCGAACCACTCCAGTTTTTGAACCACAACAAGATGATGAGTGGGACAACGATGGATTTGTGATTCCAAGTTTGGTTATCGAAGACCAAGATAAAACTAATGATGATGCTCCTATAGTAGAAGACCCAAAACCTCCATCTCCAAAGGACAAAAAACAAGAGAATATATATTTAGGACCGCACGGAGCGCCCCCTACACATTCAAAGCAGCAAGAGGTAAATCCTTCTAGCCGTAAACAGAAGTTCAAGCAGAAATTAAAGGAAGCAGATCAGAAGAGTTGTGGGACTGGTCGAGAGAATAAGTTGGACAATCTGCGAGAACTTGTGGGTGGTGGGAACGGAAGCAGCAACATGGCAAAAGGTACTTCGAGGGACTGGTTAGACCCCCACTGTCATGAGTCTGAGTTTGAAAAGTGGCATCCCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.57

Weight (kDa)

5.21

Isoelectric Point (pI)

62.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55640
fragaria_vesca FvH4_3g29370
malus_domestica MD03G1184300.v1.1 MD11G1201100.v1.1
prunus_persica Prupe.4G242300_v2.0.a1 Prupe.4G242300_v2.0.a1
pyrus_communis pycom11g17350
rosa_chinensis RchiOBHm_Chr5g0053761
rosa_laevigata RLG00000034901
rosa_multiflora Rmu_sc0001759.1_g000025
rosa_roxburghii Rroxscaffold_1G00026830
rosa_rugosa Rorug05G0282400
rosa_samantha Rh5AG352900 Rh5BG364600 Rh5CG389500 Rh5DG379400
rosa_wichuraiana Rw5G033340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 194
AfaI GTAC 1 cut(s) 379
AgsI TTSAA 4 cut(s) 38, 219, 262, 425
ApeKI GCWGC 2 cut(s) 223, 360
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 2 cut(s) 4, 191
AsuII TTCGAA 1 cut(s) 19
AvaII GGWCC 2 cut(s) 4, 191
BbsI GAAGAC 2 cut(s) 105, 144
BbvI GCAGC 2 cut(s) 235, 372
BccI CCATC 2 cut(s) 62, 160
BceAI ACGGC 1 cut(s) 231
BfaI CTAG 1 cut(s) 243
BfmI CTRYAG 1 cut(s) 129
BfoI RGCGCY 1 cut(s) 206
BisI GCNGC 2 cut(s) 224, 361
BlsI GCNGC 2 cut(s) 225, 362
Bme18I GGWCC 2 cut(s) 4, 191
BmgT120I GGNCC 2 cut(s) 4, 191
BmiI GGNNCC 1 cut(s) 6
BmrI ACTGGG 1 cut(s) 433
BmsI GCATC 1 cut(s) 112
BmuI ACTGGG 1 cut(s) 433
BpiI GAAGAC 2 cut(s) 105, 144
BpmI CTGGAG 1 cut(s) 12
Bpu14I TTCGAA 1 cut(s) 19
Bse1I ACTGG 5 cut(s) 14, 29, 307, 395, 439
BseGI GGATG 1 cut(s) 433
BseMII CTCAG 1 cut(s) 408
BseNI ACTGG 5 cut(s) 14, 29, 307, 395, 439
BseXI GCAGC 2 cut(s) 235, 372
BslFI GGGAC 3 cut(s) 74, 313, 401
BsmFI GGGAC 3 cut(s) 74, 313, 401
Bsp119I TTCGAA 1 cut(s) 19
Bsp143I GATC 1 cut(s) 283
BspACI CCGC 1 cut(s) 194
BspCNI CTCAG 1 cut(s) 409
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 1 cut(s) 6
BspT104I TTCGAA 1 cut(s) 19
BsrI ACTGG 5 cut(s) 14, 29, 307, 395, 439
BssMI GATC 1 cut(s) 283
Bst4CI ACNGT 1 cut(s) 407
Bst6I CTCTTC 1 cut(s) 284
BstBI TTCGAA 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 417
BstF5I GGATG 1 cut(s) 433
BstH2I RGCGCY 1 cut(s) 206
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 1 cut(s) 286
BstMBI GATC 1 cut(s) 283
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstSFI CTRYAG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 235, 372
BstV2I GAAGAC 2 cut(s) 105, 144
BtsCI GGATG 1 cut(s) 433
BtsIMutI CAGTG 1 cut(s) 403
CciI TCATGA 1 cut(s) 409
CfoI GCGC 1 cut(s) 205
Cfr13I GGNCC 2 cut(s) 4, 191
Csp6I GTAC 1 cut(s) 378
CviAII CATG 2 cut(s) 367, 410
CviJI RGCY 1 cut(s) 246
CviKI_1 RGCY 1 cut(s) 246
CviQI GTAC 1 cut(s) 378
DdeI CTNAG 1 cut(s) 417
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
Eco47I GGWCC 2 cut(s) 4, 191
FaeI CATG 2 cut(s) 370, 413
FaiI YATR 5 cut(s) 131, 182, 184, 368, 411
FaqI GGGAC 3 cut(s) 74, 313, 401
FatI CATG 2 cut(s) 366, 409
Fnu4HI GCNGC 2 cut(s) 224, 361
FokI GGATG 1 cut(s) 420
Fsp4HI GCNGC 2 cut(s) 224, 361
FspBI CTAG 1 cut(s) 243
GlaI GCGC 1 cut(s) 204
GluI GCNGC 2 cut(s) 224, 361
GsuI CTGGAG 1 cut(s) 12
HaeII RGCGCY 1 cut(s) 206
HhaI GCGC 1 cut(s) 205
Hin1II CATG 2 cut(s) 370, 413
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HinfI GANTC 2 cut(s) 79, 413
Hpy166II GTNNAC 1 cut(s) 251
Hpy188I TCNGA 2 cut(s) 288, 418
Hpy188III TCNNGA 2 cut(s) 308, 410
Hpy8I GTNNAC 1 cut(s) 251
HpyAV CCTTC 2 cut(s) 18, 249
HpyCH4III ACNGT 1 cut(s) 407
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 1 cut(s) 417
Hsp92II CATG 2 cut(s) 370, 413
HspAI GCGC 1 cut(s) 203
Kzo9I GATC 1 cut(s) 283
LmnI GCTCC 2 cut(s) 130, 200
LpnPI CCDG 4 cut(s) 27, 42, 288, 376
Lsp1109I GCAGC 2 cut(s) 235, 372
LweI GCATC 1 cut(s) 112
MaeI CTAG 1 cut(s) 243
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MboII GAAGA 3 cut(s) 110, 149, 301
MluCI AATT 1 cut(s) 269
MlyI GAGTC 1 cut(s) 422
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 3 cut(s) 159, 223, 378
MseI TTAA 1 cut(s) 272
MslI CAYNNNNRTG 1 cut(s) 408
MwoI GCNNNNNNNGC 1 cut(s) 202
NdeII GATC 1 cut(s) 283
NlaIII CATG 2 cut(s) 370, 413
NlaIV GGNNCC 1 cut(s) 6
NspV TTCGAA 1 cut(s) 19
PagI TCATGA 1 cut(s) 409
PfeI GAWTC 1 cut(s) 79
PkrI GCNGC 2 cut(s) 225, 362
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 4, 191
RsaI GTAC 1 cut(s) 379
RsaNI GTAC 1 cut(s) 378
RseI CAYNNNNRTG 1 cut(s) 408
SaqAI TTAA 1 cut(s) 272
SatI GCNGC 2 cut(s) 224, 361
Sau3AI GATC 1 cut(s) 283
Sau96I GGNCC 2 cut(s) 4, 191
SchI GAGTC 1 cut(s) 422
SetI ASST 3 cut(s) 151, 234, 379
SfaNI GCATC 1 cut(s) 112
SfcI CTRYAG 1 cut(s) 129
SfuI TTCGAA 1 cut(s) 19
SinI GGWCC 2 cut(s) 4, 191
SmiMI CAYNNNNRTG 1 cut(s) 408
Sse9I AATT 1 cut(s) 269
SsiI CCGC 1 cut(s) 194
SspMI CTAG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 407
TaqI TCGA 4 cut(s) 19, 96, 307, 383
TasI AATT 1 cut(s) 269
TfiI GAWTC 1 cut(s) 79
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TscAI CASTG 1 cut(s) 410
TseI GCWGC 2 cut(s) 223, 360
TspGWI ACGGA 2 cut(s) 213, 369
TspRI CASTG 1 cut(s) 410
VpaK11BI GGWCC 2 cut(s) 4, 191
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.