Prupe.4G242300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014185
Physical Location & Seq
Reverse (-)
15997617 .. 15999677
2061 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G242300.1

Sequence Viewer

Length: 459 bp
ATGGACCCCTCTCCAGTGCGAACCACTCAACCTCTTGATGAAGAAGATGAGTGGGACACTGATGGATTTGTGATTCCGAGCTTGGTTATTGAAGACCAAGATAAAAGTAATCATGATGCTCCAACAATAGAAGCCTCAAAACCTCCATCTCCAAAGTTGTCTTCTTTTCTGCAGGCCAAAGGAGAAGAGAAGATCTACTTAGGACCGCACGGGGCTCCCCCTTCGCAATCAAAGCAGCAGCAAGAAGTAAACCCTTCCAGCCGTAAGCAGAAGTTCAAGCAGAAACTGAAGGAAGCAGATAGGAGAAGTACTGGGACAGGTCGAGAGAACAAGGTGGAGAATCTGCGAGAGCTTGTGGGTGGTGGGAAAGGAAGCAGCAGCATGGCAAAGGATTCTAACAGGGATTGGCTAGACCCTCACTGTCATGAGTCGCAATTTGAGAAGTGGAACACCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.05

Weight (kDa)

5.61

Isoelectric Point (pI)

68.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55640
fragaria_vesca FvH4_3g29370
malus_domestica MD03G1184300.v1.1 MD11G1201100.v1.1
prunus_persica Prupe.4G242300_v2.0.a1 Prupe.4G242300_v2.0.a1
pyrus_communis pycom11g17350
rosa_chinensis RchiOBHm_Chr5g0053761
rosa_laevigata RLG00000034901
rosa_multiflora Rmu_sc0001759.1_g000025
rosa_roxburghii Rroxscaffold_1G00026830
rosa_rugosa Rorug05G0282400
rosa_samantha Rh5AG352900 Rh5BG364600 Rh5CG389500 Rh5DG379400
rosa_wichuraiana Rw5G033340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 308
AdeI CACNNNGTG 1 cut(s) 456
AfaI GTAC 1 cut(s) 310
AgsI TTSAA 2 cut(s) 92, 277
AjuI GAANNNNNNNTTGG 2 cut(s) 145, 177
AluBI AGCT 2 cut(s) 81, 352
AluI AGCT 2 cut(s) 81, 352
AlwNI CAGNNNCTG 1 cut(s) 286
AoxI GGCC 1 cut(s) 174
ApeKI GCWGC 4 cut(s) 235, 238, 375, 378
AspS9I GGNCC 2 cut(s) 4, 203
AvaII GGWCC 2 cut(s) 4, 203
BanII GRGCYC 1 cut(s) 217
BbsI GAAGAC 2 cut(s) 99, 153
BbvI GCAGC 4 cut(s) 247, 250, 387, 390
BccI CCATC 2 cut(s) 56, 154
BceAI ACGGC 1 cut(s) 246
BfaI CTAG 1 cut(s) 410
BfmI CTRYAG 1 cut(s) 170
BglII AGATCT 1 cut(s) 192
BisI GCNGC 4 cut(s) 236, 239, 376, 379
BlsI GCNGC 4 cut(s) 237, 240, 377, 380
BmcAI AGTACT 1 cut(s) 310
Bme18I GGWCC 2 cut(s) 4, 203
BmgT120I GGNCC 2 cut(s) 4, 203
BmiI GGNNCC 2 cut(s) 6, 216
BmrI ACTGGG 2 cut(s) 321, 448
BmsI GCATC 1 cut(s) 106
BmuI ACTGGG 2 cut(s) 321, 448
BpiI GAAGAC 2 cut(s) 99, 153
Bse1I ACTGG 3 cut(s) 14, 316, 454
BseNI ACTGG 3 cut(s) 14, 316, 454
BseXI GCAGC 4 cut(s) 247, 250, 387, 390
BshFI GGCC 1 cut(s) 176
BslFI GGGAC 2 cut(s) 68, 328
BsmFI GGGAC 2 cut(s) 68, 328
BsnI GGCC 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 1 cut(s) 192
BspACI CCGC 1 cut(s) 206
BspANI GGCC 1 cut(s) 176
BspHI TCATGA 2 cut(s) 112, 424
BspLI GGNNCC 2 cut(s) 6, 216
BspMAI CTGCAG 1 cut(s) 174
BsrI ACTGG 3 cut(s) 14, 316, 454
BssMI GATC 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 422
Bst6I CTCTTC 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 199
BstKTI GATC 1 cut(s) 195
BstMBI GATC 1 cut(s) 192
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstSFI CTRYAG 1 cut(s) 170
BstV1I GCAGC 4 cut(s) 247, 250, 387, 390
BstV2I GAAGAC 2 cut(s) 99, 153
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
BsuRI GGCC 1 cut(s) 176
BtsIMutI CAGTG 3 cut(s) 21, 57, 418
Cac8I GCNNGC 1 cut(s) 174
CaiI CAGNNNCTG 1 cut(s) 286
CciI TCATGA 2 cut(s) 112, 424
Cfr13I GGNCC 2 cut(s) 4, 203
Csp6I GTAC 1 cut(s) 309
CviAII CATG 3 cut(s) 113, 382, 425
CviJI RGCY 7 cut(s) 81, 134, 176, 215, 261, 352, 409
CviKI_1 RGCY 7 cut(s) 81, 134, 176, 215, 261, 352, 409
CviQI GTAC 1 cut(s) 309
DdeI CTNAG 1 cut(s) 199
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
DraIII CACNNNGTG 1 cut(s) 456
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 217
Eco47I GGWCC 2 cut(s) 4, 203
Eco57I CTGAAG 1 cut(s) 308
EcoT38I GRGCYC 1 cut(s) 217
FaeI CATG 3 cut(s) 116, 385, 428
FaiI YATR 3 cut(s) 114, 383, 426
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FaqI GGGAC 2 cut(s) 68, 328
FatI CATG 3 cut(s) 112, 381, 424
Fnu4HI GCNGC 4 cut(s) 236, 239, 376, 379
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 4 cut(s) 236, 239, 376, 379
FspBI CTAG 1 cut(s) 410
GluI GCNGC 4 cut(s) 236, 239, 376, 379
HaeIII GGCC 1 cut(s) 176
Hin1II CATG 3 cut(s) 116, 385, 428
HinfI GANTC 4 cut(s) 73, 340, 392, 428
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 4 cut(s) 35, 113, 323, 425
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 3 cut(s) 231, 264, 283
HpyCH4III ACNGT 1 cut(s) 422
HpyCH4V TGCA 1 cut(s) 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
HpyF3I CTNAG 1 cut(s) 199
Hsp92II CATG 3 cut(s) 116, 385, 428
Kzo9I GATC 1 cut(s) 192
LmnI GCTCC 2 cut(s) 124, 220
LpnPI CCDG 6 cut(s) 27, 158, 271, 297, 303, 385
Lsp1109I GCAGC 4 cut(s) 247, 250, 387, 390
LweI GCATC 1 cut(s) 106
MaeI CTAG 1 cut(s) 410
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MboII GAAGA 6 cut(s) 53, 56, 104, 153, 197, 202
MflI RGATCY 1 cut(s) 192
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 1 cut(s) 434
MlyI GAGTC 1 cut(s) 437
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 5 cut(s) 19, 42, 145, 153, 426
MslI CAYNNNNRTG 1 cut(s) 423
MwoI GCNNNNNNNGC 1 cut(s) 232
NdeII GATC 1 cut(s) 192
NlaIII CATG 3 cut(s) 116, 385, 428
NlaIV GGNNCC 2 cut(s) 6, 216
PagI TCATGA 2 cut(s) 112, 424
PfeI GAWTC 3 cut(s) 73, 340, 392
PkrI GCNGC 4 cut(s) 237, 240, 377, 380
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
PspN4I GGNNCC 2 cut(s) 6, 216
PspPI GGNCC 2 cut(s) 4, 203
PstI CTGCAG 1 cut(s) 174
PstNI CAGNNNCTG 1 cut(s) 286
PsuI RGATCY 1 cut(s) 192
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
RseI CAYNNNNRTG 1 cut(s) 423
SatI GCNGC 4 cut(s) 236, 239, 376, 379
Sau3AI GATC 1 cut(s) 192
Sau96I GGNCC 2 cut(s) 4, 203
ScaI AGTACT 1 cut(s) 310
SchI GAGTC 1 cut(s) 437
SduI GDGCHC 1 cut(s) 217
SetI ASST 6 cut(s) 34, 83, 145, 322, 336, 354
SfaNI GCATC 1 cut(s) 106
SfcI CTRYAG 1 cut(s) 170
SinI GGWCC 2 cut(s) 4, 203
SmiMI CAYNNNNRTG 1 cut(s) 423
Sse9I AATT 1 cut(s) 434
SsiI CCGC 1 cut(s) 206
SspMI CTAG 1 cut(s) 410
TaaI ACNGT 1 cut(s) 422
TaqI TCGA 1 cut(s) 322
TasI AATT 1 cut(s) 434
TatI WGTACW 1 cut(s) 308
TfiI GAWTC 3 cut(s) 73, 340, 392
TscAI CASTG 3 cut(s) 21, 64, 425
TseI GCWGC 4 cut(s) 235, 238, 375, 378
TspDTI ATGAA 1 cut(s) 54
TspRI CASTG 3 cut(s) 21, 64, 425
VpaK11BI GGWCC 2 cut(s) 4, 203
XspI CTAG 1 cut(s) 410
ZrmI AGTACT 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.