Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015506

Physical Location & Seq

Genomic Coordinates Forward (+)

23204377 .. 23206663

Gene Structure 2287 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTCAAATCGACCTGAGTTACTCGCACCGCCGGAGATATTCTATGACGATACCGAAGCTCGGAAGTATACTTCTTCCTCTCGTATCGTCGAAATTCAGGCGAAGTTATCAGAGAGAGCTTTGGAGCTTCTGGCTTTACCCGAGGATGGTGTTCCTAGATTCTTACTCGACATTGGTTGTGGATCTGGATTGAGTGGAGAAACACTTTCTGAAGACGGGCATCATTGGATTGGTTTAGACATTTCAGCCTCAATGCTTCATGTTGCTGTGGAGCGAGAAGTTGAGGGTGATCTTTTACTTGGTGACATGGGGCAGGGCTTAGGTCTTCGTTCTGGAGTTATTGACGGAGCCATCAGTATATCGGCTGTTCAGTGGTTATGCAATGCGGATAAGTCATCGCATGAACCTCGTTTGAGGCTAAAGGCTTTCTTTGGTTCACTATACCGCTGCTTATCAAGAGGAGCAAGAGCAGTTTTTCAAGTGTACCCTGAAAATATTGCTCAGCGTGAATTGATTCTTCGCCAGGCCTTACAAGCTGGATTTGGCGGTGGACTTGTTGTTGACTATCCACACAGTACTAAGAAAAGAAAAGAGTTCTTGGTCCTCACATGTGGCACTGTTCAGACGAGTATTCAGACCAGTAAAAATGAGTATGATGAGAGTTGCTCAGAAGATGACAACAGCGACGATGAAGAGAGTGAAGAGGTGGGTGTATCAGATAGGAATAGGCCAAGGAAAAGGCAGAGAACGAACACGAAAGTGAAAGGAAGAGAATGGGTTCTGAGGAAGAAAGAGCAAAGTAGAAGAAAAGGAAAAAATGTTCCTGCTGACTCCAAGTTCACCAGTAGAAAACGCAGGACGCGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009611 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010467 GO:0016070 GO:0016072 GO:0016435 GO:0016740 GO:0016741 GO:0019827 GO:0022613 GO:0022622 GO:0031167 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0036265 GO:0042060 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0070013 GO:0070475 GO:0070476 GO:0071704 GO:0071840 GO:0090304 GO:0090696 GO:0098727 GO:0099402 GO:0140098 GO:0140102 GO:1901360 GO:1905392 GO:1990110

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 WBS_methylT

Protein Analysis

289

Amino Acids

32.39

Weight (kDa)

8.22

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	56 - 158	4.8e-09	Methyltransferase domain
Methyltransf_25	PF13649	56 - 130	2.8e-08	Methyltransferase domain
WBS_methylT	PF12589	202 - 286	1.3e-20	Methyltransferase involved in Williams-Beuren syndrome

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57280
fragaria_vesca	FvH4_4g07620
malus_domestica	MD13G1245300.v1.1 MD16G1253000.v1.1
prunus_persica	Prupe.1G079400_v2.0.a1
pyrus_communis	pycom13g21630
rosa_chinensis	RchiOBHm_Chr4g0400231
rosa_laevigata	RLG00000009202
rosa_multiflora	Rmu_sc0004338.1_g000003
rosa_roxburghii	Rroxscaffold_5G00345190
rosa_rugosa	Rorug04G0024000
rosa_samantha	Rh4AG099000 Rh4BG097300 Rh4CG108500 Rh4DG094000
rosa_wichuraiana	Rw4G008230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	68
AccII	CGCG	1 cut(s)	862
AciI	CCGC	4 cut(s)	29, 386, 445, 546
AclWI	GGATC	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	2 cut(s)	485, 577
AfiI	CCNNNNNNNGG	2 cut(s)	60, 146
AflIII	ACRYGT	2 cut(s)	608, 860
AgsI	TTSAA	1 cut(s)	479
AjnI	CCWGG	1 cut(s)	522
AleI	CACNNNNGTG	1 cut(s)	758
AloI	GAACNNNNNNTCC	2 cut(s)	804, 836
AluBI	AGCT	4 cut(s)	59, 119, 127, 536
AluI	AGCT	4 cut(s)	59, 119, 127, 536
AlwI	GGATC	1 cut(s)	190
Ama87I	CYCGRG	1 cut(s)	140
AoxI	GGCC	2 cut(s)	525, 728
ApeKI	GCWGC	1 cut(s)	447
ApoI	RAATTY	1 cut(s)	93
Asp700I	GAANNNNTTC	2 cut(s)	513, 777
AspS9I	GGNCC	1 cut(s)	601
AsuHPI	GGTGA	3 cut(s)	299, 314, 832
AvaI	CYCGRG	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	601
BbsI	GAAGAC	2 cut(s)	219, 317
BbvI	GCAGC	1 cut(s)	434
BccI	CCATC	2 cut(s)	140, 359
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	1 cut(s)	524
BfaI	CTAG	2 cut(s)	156, 868
BisI	GCNGC	1 cut(s)	448
BlpI	GCTNAGC	1 cut(s)	501
BlsI	GCNGC	1 cut(s)	449
BmcAI	AGTACT	1 cut(s)	577
Bme1390I	CCNGG	1 cut(s)	524
Bme18I	GGWCC	1 cut(s)	601
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	601
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	524
BmsI	GCATC	1 cut(s)	229
BpiI	GAAGAC	2 cut(s)	219, 317
BplI	GAGNNNNNCTC	2 cut(s)	650, 682
BpmI	CTGGAG	1 cut(s)	354
Bpu10I	CCTNAGC	1 cut(s)	319
Bpu1102I	GCTNAGC	1 cut(s)	501
BsaJI	CCNNGG	2 cut(s)	141, 731
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 146
Bse1I	ACTGG	2 cut(s)	639, 843
Bse3DI	GCAATG	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	524
BseDI	CCNNGG	2 cut(s)	141, 731
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	2 cut(s)	60, 146
BseMI	GCAATG	1 cut(s)	388
BseMII	CTCAG	4 cut(s)	6, 515, 681, 773
BseNI	ACTGG	2 cut(s)	639, 843
BseRI	GAGGAG	1 cut(s)	474
BseXI	GCAGC	1 cut(s)	434
Bsh1236I	CGCG	1 cut(s)	862
BshFI	GGCC	2 cut(s)	527, 730
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	32
BslI	CCNNNNNNNGG	2 cut(s)	60, 146
BsnI	GGCC	2 cut(s)	527, 730
BsoBI	CYCGRG	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	182, 289
Bsp1720I	GCTNAGC	1 cut(s)	501
BspACI	CCGC	4 cut(s)	29, 386, 445, 546
BspANI	GGCC	2 cut(s)	527, 730
BspCNI	CTCAG	4 cut(s)	7, 514, 680, 774
BspFNI	CGCG	1 cut(s)	862
BspLI	GGNNCC	1 cut(s)	349
BspPI	GGATC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	388
BsrI	ACTGG	2 cut(s)	639, 843
BssECI	CCNNGG	2 cut(s)	141, 731
BssMI	GATC	2 cut(s)	182, 289
BssNAI	GTATAC	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	731
Bst1107I	GTATAC	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	524
Bst4CI	ACNGT	2 cut(s)	575, 619
Bst6I	CTCTTC	3 cut(s)	687, 696, 763
BstDEI	CTNAG	6 cut(s)	15, 319, 501, 579, 667, 782
BstF5I	GGATG	1 cut(s)	151
BstFNI	CGCG	1 cut(s)	862
BstKTI	GATC	2 cut(s)	185, 292
BstMBI	GATC	2 cut(s)	182, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	533
BstNI	CCWGG	1 cut(s)	524
BstNSI	RCATGY	1 cut(s)	612
BstSCI	CCNGG	1 cut(s)	522
BstUI	CGCG	1 cut(s)	862
BstV1I	GCAGC	1 cut(s)	434
BstV2I	GAAGAC	2 cut(s)	219, 317
BstX2I	RGATCY	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	182
BstZ17I	GTATAC	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	527, 730
BtgZI	GCGATG	1 cut(s)	381
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	2 cut(s)	377, 615
Cfr13I	GGNCC	1 cut(s)	601
Csp6I	GTAC	2 cut(s)	484, 576
CviAII	CATG	4 cut(s)	260, 307, 401, 609
CviQI	GTAC	2 cut(s)	484, 576
DdeI	CTNAG	6 cut(s)	15, 319, 501, 579, 667, 782
DpnI	GATC	2 cut(s)	184, 291
DpnII	GATC	2 cut(s)	182, 289
Eam1104I	CTCTTC	3 cut(s)	687, 696, 763
EarI	CTCTTC	3 cut(s)	687, 696, 763
Eco130I	CCWWGG	1 cut(s)	731
Eco147I	AGGCCT	1 cut(s)	527
Eco47I	GGWCC	1 cut(s)	601
Eco57I	CTGAAG	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	522
EcoT14I	CCWWGG	1 cut(s)	731
ErhI	CCWWGG	1 cut(s)	731
FaeI	CATG	4 cut(s)	263, 310, 404, 612
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FatI	CATG	4 cut(s)	259, 306, 400, 608
FblI	GTMKAC	1 cut(s)	68
Fnu4HI	GCNGC	1 cut(s)	448
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	448
FspBI	CTAG	2 cut(s)	156, 868
GluI	GCNGC	1 cut(s)	448
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	2 cut(s)	527, 730
HapII	CCGG	1 cut(s)	32
Hin1II	CATG	4 cut(s)	263, 310, 404, 612
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HinfI	GANTC	3 cut(s)	159, 514, 830
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	3 cut(s)	299, 314, 832
Hpy166II	GTNNAC	6 cut(s)	69, 437, 484, 551, 562, 840
Hpy188I	TCNGA	8 cut(s)	63, 112, 211, 624, 636, 670, 718, 783
Hpy188III	TCNNGA	3 cut(s)	186, 333, 456
Hpy8I	GTNNAC	6 cut(s)	69, 437, 484, 551, 562, 840
Hpy99I	CGWCG	2 cut(s)	92, 689
HpyCH4III	ACNGT	2 cut(s)	575, 619
HpyCH4V	TGCA	1 cut(s)	381
HpyF10VI	GCNNNNNNNGC	1 cut(s)	533
HpyF3I	CTNAG	6 cut(s)	15, 319, 501, 579, 667, 782
Hsp92II	CATG	4 cut(s)	263, 310, 404, 612
Kzo9I	GATC	2 cut(s)	182, 289
LmnI	GCTCC	4 cut(s)	124, 271, 347, 461
Lsp1109I	GCAGC	1 cut(s)	434
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	2 cut(s)	156, 868
MaeIII	GTNAC	2 cut(s)	18, 302
MalI	GATC	2 cut(s)	184, 291
MboI	GATC	2 cut(s)	182, 289
MflI	RGATCY	1 cut(s)	182
MluCI	AATT	2 cut(s)	93, 509
MluI	ACGCGT	1 cut(s)	860
MlyI	GAGTC	1 cut(s)	824
MroXI	GAANNNNTTC	2 cut(s)	513, 777
MslI	CAYNNNNRTG	1 cut(s)	758
MspA1I	CMGCKG	1 cut(s)	447
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	524
MvnI	CGCG	1 cut(s)	862
MwoI	GCNNNNNNNGC	1 cut(s)	533
NdeII	GATC	2 cut(s)	182, 289
NlaIII	CATG	4 cut(s)	263, 310, 404, 612
NlaIV	GGNNCC	1 cut(s)	349
NmuCI	GTSAC	1 cut(s)	302
NspI	RCATGY	1 cut(s)	612
OliI	CACNNNNGTG	1 cut(s)	758
PceI	AGGCCT	1 cut(s)	527
PciI	ACATGT	1 cut(s)	608
PcsI	WCGNNNNNNNCGW	1 cut(s)	859
PdmI	GAANNNNTTC	2 cut(s)	513, 777
PfeI	GAWTC	2 cut(s)	159, 514
PkrI	GCNGC	1 cut(s)	449
PleI	GAGTC	1 cut(s)	824
PpsI	GAGTC	1 cut(s)	824
PscI	ACATGT	1 cut(s)	608
Psp6I	CCWGG	1 cut(s)	522
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	1 cut(s)	601
PsuI	RGATCY	1 cut(s)	182
RsaI	GTAC	2 cut(s)	485, 577
RsaNI	GTAC	2 cut(s)	484, 576
RseI	CAYNNNNRTG	1 cut(s)	758
SatI	GCNGC	1 cut(s)	448
Sau3AI	GATC	2 cut(s)	182, 289
Sau96I	GGNCC	1 cut(s)	601
ScaI	AGTACT	1 cut(s)	577
SchI	GAGTC	1 cut(s)	824
ScrFI	CCNGG	1 cut(s)	524
SetI	ASST	8 cut(s)	16, 61, 121, 129, 325, 409, 538, 708
SfaNI	GCATC	1 cut(s)	229
SinI	GGWCC	1 cut(s)	601
SmiMI	CAYNNNNRTG	1 cut(s)	758
Sse9I	AATT	2 cut(s)	93, 509
SseBI	AGGCCT	1 cut(s)	527
SsiI	CCGC	4 cut(s)	29, 386, 445, 546
SspI	AATATT	1 cut(s)	496
SspMI	CTAG	2 cut(s)	156, 868
StuI	AGGCCT	1 cut(s)	527
StyD4I	CCNGG	1 cut(s)	522
StyI	CCWWGG	1 cut(s)	731
TaaI	ACNGT	2 cut(s)	575, 619
TaqI	TCGA	3 cut(s)	10, 90, 168
TasI	AATT	2 cut(s)	93, 509
TatI	WGTACW	1 cut(s)	575
TfiI	GAWTC	2 cut(s)	159, 514
TscAI	CASTG	2 cut(s)	377, 622
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	1 cut(s)	447
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	3 cut(s)	248, 417, 705
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	2 cut(s)	377, 622
VpaK11BI	GGWCC	1 cut(s)	601
XapI	RAATTY	1 cut(s)	93
XceI	RCATGY	1 cut(s)	612
XmiI	GTMKAC	1 cut(s)	68
XmnI	GAANNNNTTC	2 cut(s)	513, 777
XspI	CTAG	2 cut(s)	156, 868
ZrmI	AGTACT	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.