Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0015506

Physical Location & Seq

Genomic Coordinates Reverse (-)

25714241 .. 25716958

Gene Structure 2718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1245300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGTCTCGGCCGGAGCTGCAAGCTCCACCTGAGATTTTCTACAATGAAGACGAAGCTCGCAAGTACACCCGCAATTCCCGAATCATGGAAATTCAGTCGGAGCTCTCCCACCGAGCCCTCGAGCTTCTCGCTCTCCCCGACGATGGCGTCCCCAGGCTGCTCCTTGACATTGGTTGTGGGTCGGGGCTCAGCGGAGACACATTGTCGGAGAGTGGGCATCAGTGGATTGGTTTGGATATTTCCCAGTCGATGCTTGATGTGGCATTGGAGAATGAGGTTGAGGGTGACCTTCTGCTCGGGGACATGGGTCAGGGCTTAGGACTTCGTTCAGGAGTTATTGATGGAGCGATAAGCATCTCAGCCGTTCAGTGGTTGTGCAATGCTGATAAGTCCTCACATAATCCACGATTACGATTGAAGGCTTTCTTTGGATCATTGTACAGATGCTTAGCAAGGGGTGCAAGAGCAGCGTTTCAACTTTATCCTGAAAACCTGGACCAGCGCGAGTTGATTTTGAGTTCTGCTATGCGTGCTGGATTTGCAGGGGGTGTTGTTGTTGATTATCCCAACAGTTCCAAGAAACGAAAAGAATACCTTGTCCTCACATGTGGTCCACCATCTATTAGCGCTTCTACTCCCAAGGGAAAAGGTGAAGATGGCGAGGGTTCCTCTGACGATGAGAGTGGTGAAGATGAAGAAAATCAGACAGTTTCAAACTCAGACAGGCACAGGCCGAGGAAAAAGCAGAAGACAAATAAGAAAGGCAAGGGAAGAGAATGGATACTAAAGAAGAAGGAACAAATGAGAAAAAAAGGAAATGTTGTTCCCCCAGACACAAAATACACAGCTCGGAAACGGAAGGCTCGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009611 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010467 GO:0016070 GO:0016072 GO:0016435 GO:0016740 GO:0016741 GO:0019827 GO:0022613 GO:0022622 GO:0031167 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0036265 GO:0042060 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0070013 GO:0070475 GO:0070476 GO:0071704 GO:0071840 GO:0090304 GO:0090696 GO:0098727 GO:0099402 GO:0140098 GO:0140102 GO:1901360 GO:1905392 GO:1990110

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 WBS_methylT

Protein Analysis

291

Amino Acids

32.06

Weight (kDa)

8.76

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	55 - 156	3e-09	Methyltransferase domain
Methyltransf_25	PF13649	55 - 129	4.9e-08	Methyltransferase domain
WBS_methylT	PF12589	201 - 288	1.8e-23	Methyltransferase involved in Williams-Beuren syndrome

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57280
fragaria_vesca	FvH4_4g07620
malus_domestica	MD13G1245300.v1.1 MD16G1253000.v1.1
prunus_persica	Prupe.1G079400_v2.0.a1
pyrus_communis	pycom13g21630
rosa_chinensis	RchiOBHm_Chr4g0400231
rosa_laevigata	RLG00000009202
rosa_multiflora	Rmu_sc0004338.1_g000003
rosa_roxburghii	Rroxscaffold_5G00345190
rosa_rugosa	Rorug04G0024000
rosa_samantha	Rh4AG099000 Rh4BG097300 Rh4CG108500 Rh4DG094000
rosa_wichuraiana	Rw4G008230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AccII	CGCG	1 cut(s)	504
AciI	CCGC	2 cut(s)	70, 192
AclWI	GGATC	1 cut(s)	439
AcoI	YGGCCR	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	2 cut(s)	65, 440
AfeI	AGCGCT	1 cut(s)	628
AfiI	CCNNNNNNNGG	3 cut(s)	85, 143, 369
AflIII	ACRYGT	1 cut(s)	605
AgsI	TTSAA	3 cut(s)	418, 476, 714
AhdI	GACNNNNNGTC	1 cut(s)	202
AjnI	CCWGG	2 cut(s)	152, 492
AloI	GAACNNNNNNTCC	2 cut(s)	807, 839
AluBI	AGCT	6 cut(s)	16, 23, 56, 103, 124, 848
AluI	AGCT	6 cut(s)	16, 23, 56, 103, 124, 848
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	9, 189
AlwI	GGATC	1 cut(s)	439
Ama87I	CYCGRG	2 cut(s)	119, 296
Aor51HI	AGCGCT	1 cut(s)	628
AoxI	GGCC	2 cut(s)	8, 731
ApeKI	GCWGC	3 cut(s)	16, 157, 467
ApoI	RAATTY	1 cut(s)	90
Asp700I	GAANNNNTTC	1 cut(s)	422
AspLEI	GCGC	2 cut(s)	504, 629
AspS9I	GGNCC	2 cut(s)	496, 611
AsuHPI	GGTGA	3 cut(s)	296, 662, 698
AvaI	CYCGRG	2 cut(s)	119, 296
AvaII	GGWCC	2 cut(s)	496, 611
BanII	GRGCYC	3 cut(s)	105, 118, 189
BbsI	GAAGAC	2 cut(s)	54, 755
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	3 cut(s)	3, 144, 479
BccI	CCATC	4 cut(s)	137, 335, 625, 650
BceAI	ACGGC	1 cut(s)	347
BciT130I	CCWGG	2 cut(s)	154, 494
BciVI	GTATCC	1 cut(s)	774
BcoDI	GTCTC	2 cut(s)	9, 189
BfoI	RGCGCY	1 cut(s)	630
BfuI	GTATCC	1 cut(s)	774
BisI	GCNGC	3 cut(s)	17, 158, 468
BlpI	GCTNAGC	2 cut(s)	188, 448
BlsI	GCNGC	3 cut(s)	18, 159, 469
Bme1390I	CCNGG	2 cut(s)	154, 494
Bme18I	GGWCC	2 cut(s)	496, 611
BmeRI	GACNNNNNGTC	1 cut(s)	202
BmeT110I	CYCGRG	2 cut(s)	119, 296
BmgT120I	GGNCC	2 cut(s)	496, 611
BmiI	GGNNCC	1 cut(s)	667
BmrFI	CCNGG	2 cut(s)	154, 494
BmrI	ACTGGG	1 cut(s)	238
BmsI	GCATC	4 cut(s)	226, 240, 363, 434
BmuI	ACTGGG	1 cut(s)	238
BoxI	GACNNNNGTC	1 cut(s)	306
BpiI	GAAGAC	2 cut(s)	54, 755
BplI	GAGNNNNNCTC	2 cut(s)	653, 685
Bpu10I	CCTNAGC	1 cut(s)	316
Bpu1102I	GCTNAGC	2 cut(s)	188, 448
BsaBI	GATNNNNATC	1 cut(s)	353
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	3 cut(s)	152, 639, 734
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 143, 369
Bse1I	ACTGG	1 cut(s)	244
Bse3DI	GCAATG	1 cut(s)	385
Bse8I	GATNNNNATC	1 cut(s)	353
BseBI	CCWGG	2 cut(s)	154, 494
BseDI	CCNNGG	3 cut(s)	152, 639, 734
BseJI	GATNNNNATC	1 cut(s)	353
BseLI	CCNNNNNNNGG	3 cut(s)	85, 143, 369
BseMI	GCAATG	1 cut(s)	385
BseMII	CTCAG	4 cut(s)	21, 202, 372, 732
BseNI	ACTGG	1 cut(s)	244
BseX3I	CGGCCG	1 cut(s)	8
BseXI	GCAGC	3 cut(s)	3, 144, 479
Bsh1236I	CGCG	1 cut(s)	504
Bsh1285I	CGRYCG	1 cut(s)	11
BshFI	GGCC	2 cut(s)	10, 733
BsiEI	CGRYCG	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	105
BsiHKCI	CYCGRG	2 cut(s)	119, 296
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	2 cut(s)	134, 314
BslI	CCNNNNNNNGG	3 cut(s)	85, 143, 369
BsmAI	GTCTC	2 cut(s)	9, 189
BsmFI	GGGAC	2 cut(s)	134, 314
BsnI	GGCC	2 cut(s)	10, 733
BsoBI	CYCGRG	2 cut(s)	119, 296
Bsp1286I	GDGCHC	3 cut(s)	105, 118, 189
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	1 cut(s)	431
Bsp1720I	GCTNAGC	2 cut(s)	188, 448
BspACI	CCGC	2 cut(s)	70, 192
BspANI	GGCC	2 cut(s)	10, 733
BspCNI	CTCAG	4 cut(s)	22, 201, 371, 731
BspFNI	CGCG	1 cut(s)	504
BspLI	GGNNCC	1 cut(s)	667
BspPI	GGATC	1 cut(s)	439
BsrDI	GCAATG	1 cut(s)	385
BsrGI	TGTACA	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	3 cut(s)	152, 639, 734
BssMI	GATC	1 cut(s)	431
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	639
Bst2UI	CCWGG	2 cut(s)	154, 494
Bst4CI	ACNGT	2 cut(s)	572, 709
Bst6I	CTCTTC	1 cut(s)	766
BstACI	GRCGYC	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstAUI	TGTACA	1 cut(s)	438
BstC8I	GCNNGC	3 cut(s)	21, 58, 531
BstDEI	CTNAG	6 cut(s)	30, 188, 316, 358, 448, 718
BstEII	GGTNACC	1 cut(s)	284
BstFNI	CGCG	1 cut(s)	504
BstH2I	RGCGCY	1 cut(s)	630
BstHHI	GCGC	2 cut(s)	504, 629
BstKTI	GATC	1 cut(s)	434
BstMAI	GTCTC	2 cut(s)	9, 189
BstMBI	GATC	1 cut(s)	431
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 458, 467, 530, 539
BstNI	CCWGG	2 cut(s)	154, 494
BstNSI	RCATGY	1 cut(s)	609
BstPAI	GACNNNNGTC	1 cut(s)	306
BstPI	GGTNACC	1 cut(s)	284
BstSCI	CCNGG	2 cut(s)	152, 492
BstUI	CGCG	1 cut(s)	504
BstV1I	GCAGC	3 cut(s)	3, 144, 479
BstV2I	GAAGAC	2 cut(s)	54, 755
BstZI	CGGCCG	1 cut(s)	8
BsuI	GTATCC	1 cut(s)	774
BsuRI	GGCC	2 cut(s)	10, 733
BtsIMutI	CAGTG	2 cut(s)	227, 374
Cac8I	GCNNGC	3 cut(s)	21, 58, 531
CfoI	GCGC	2 cut(s)	504, 629
Cfr13I	GGNCC	2 cut(s)	496, 611
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	64, 439
CviAII	CATG	3 cut(s)	85, 304, 606
CviQI	GTAC	2 cut(s)	64, 439
DdeI	CTNAG	6 cut(s)	30, 188, 316, 358, 448, 718
DpnI	GATC	1 cut(s)	433
DpnII	GATC	1 cut(s)	431
DrdI	GACNNNNNNGTC	1 cut(s)	146
DriI	GACNNNNNGTC	1 cut(s)	202
DseDI	GACNNNNNNGTC	1 cut(s)	146
EaeI	YGGCCR	1 cut(s)	8
EagI	CGGCCG	1 cut(s)	8
Eam1104I	CTCTTC	1 cut(s)	766
Eam1105I	GACNNNNNGTC	1 cut(s)	202
EarI	CTCTTC	1 cut(s)	766
Ecl136II	GAGCTC	1 cut(s)	103
EclXI	CGGCCG	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	639
Eco24I	GRGCYC	3 cut(s)	105, 118, 189
Eco47I	GGWCC	2 cut(s)	496, 611
Eco47III	AGCGCT	1 cut(s)	628
Eco52I	CGGCCG	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	103
Eco88I	CYCGRG	2 cut(s)	119, 296
Eco91I	GGTNACC	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	284
EcoRII	CCWGG	2 cut(s)	152, 492
EcoT14I	CCWWGG	1 cut(s)	639
EcoT38I	GRGCYC	3 cut(s)	105, 118, 189
ErhI	CCWWGG	1 cut(s)	639
FaeI	CATG	3 cut(s)	88, 307, 609
FaiI	YATR	5 cut(s)	86, 305, 399, 527, 607
FalI	AAGNNNNNCTT	4 cut(s)	410, 442, 579, 611
FaqI	GGGAC	2 cut(s)	134, 314
FatI	CATG	3 cut(s)	84, 303, 605
FauI	CCCGC	1 cut(s)	77
Fnu4HI	GCNGC	3 cut(s)	17, 158, 468
FriOI	GRGCYC	3 cut(s)	105, 118, 189
Fsp4HI	GCNGC	3 cut(s)	17, 158, 468
GlaI	GCGC	2 cut(s)	503, 628
GluI	GCNGC	3 cut(s)	17, 158, 468
HaeII	RGCGCY	1 cut(s)	630
HaeIII	GGCC	2 cut(s)	10, 733
HapII	CCGG	1 cut(s)	11
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	2 cut(s)	504, 629
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	3 cut(s)	88, 307, 609
Hin6I	GCGC	2 cut(s)	502, 627
HinP1I	GCGC	2 cut(s)	502, 627
HinfI	GANTC	1 cut(s)	81
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	3 cut(s)	296, 662, 698
Hpy166II	GTNNAC	2 cut(s)	66, 614
Hpy188I	TCNGA	6 cut(s)	100, 208, 673, 705, 721, 852
Hpy188III	TCNNGA	3 cut(s)	78, 330, 485
Hpy8I	GTNNAC	2 cut(s)	66, 614
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	4 cut(s)	299, 412, 787, 853
HpyCH4III	ACNGT	2 cut(s)	572, 709
HpyCH4V	TGCA	4 cut(s)	19, 378, 461, 542
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 458, 467, 530, 539
HpyF3I	CTNAG	6 cut(s)	30, 188, 316, 358, 448, 718
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	3 cut(s)	88, 307, 609
HspAI	GCGC	2 cut(s)	502, 627
Kzo9I	GATC	1 cut(s)	431
LmnI	GCTCC	5 cut(s)	13, 28, 100, 165, 344
Lsp1109I	GCAGC	3 cut(s)	3, 144, 479
LweI	GCATC	4 cut(s)	226, 240, 363, 434
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	1 cut(s)	433
MboI	GATC	1 cut(s)	431
MboII	GAAGA	7 cut(s)	59, 665, 701, 707, 760, 783, 802
MhlI	GDGCHC	3 cut(s)	105, 118, 189
MluCI	AATT	2 cut(s)	73, 90
MmeI	TCCRAC	2 cut(s)	78, 186
MnlI	CCTC	8 cut(s)	128, 268, 274, 403, 611, 655, 679, 729
MroXI	GAANNNNTTC	1 cut(s)	422
MspA1I	CMGCKG	1 cut(s)	192
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	2 cut(s)	154, 494
MvaI	CCWGG	2 cut(s)	154, 494
MvnI	CGCG	1 cut(s)	504
MwoI	GCNNNNNNNGC	5 cut(s)	16, 458, 467, 530, 539
NdeII	GATC	1 cut(s)	431
NlaIII	CATG	3 cut(s)	88, 307, 609
NlaIV	GGNNCC	1 cut(s)	667
NmeAIII	GCCGAG	1 cut(s)	759
NmuCI	GTSAC	1 cut(s)	284
NspI	RCATGY	1 cut(s)	609
PaeR7I	CTCGAG	1 cut(s)	119
PciI	ACATGT	1 cut(s)	605
PcsI	WCGNNNNNNNCGW	2 cut(s)	135, 862
PdmI	GAANNNNTTC	1 cut(s)	422
PfeI	GAWTC	1 cut(s)	81
PkrI	GCNGC	3 cut(s)	18, 159, 469
PscI	ACATGT	1 cut(s)	605
PshAI	GACNNNNGTC	1 cut(s)	306
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	2 cut(s)	152, 492
PspEI	GGTNACC	1 cut(s)	284
PspGI	CCWGG	2 cut(s)	152, 492
PspN4I	GGNNCC	1 cut(s)	667
PspPI	GGNCC	2 cut(s)	496, 611
PspXI	VCTCGAGB	1 cut(s)	119
RsaI	GTAC	2 cut(s)	65, 440
RsaNI	GTAC	2 cut(s)	64, 439
SacI	GAGCTC	1 cut(s)	105
SatI	GCNGC	3 cut(s)	17, 158, 468
Sau3AI	GATC	1 cut(s)	431
Sau96I	GGNCC	2 cut(s)	496, 611
ScrFI	CCNGG	2 cut(s)	154, 494
SduI	GDGCHC	3 cut(s)	105, 118, 189
SfaNI	GCATC	4 cut(s)	226, 240, 363, 434
Sfr274I	CTCGAG	1 cut(s)	119
SinI	GGWCC	2 cut(s)	496, 611
SlaI	CTCGAG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	2 cut(s)	73, 90
SsiI	CCGC	2 cut(s)	70, 192
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	152, 492
StyI	CCWWGG	1 cut(s)	639
TaaI	ACNGT	2 cut(s)	572, 709
TaqI	TCGA	3 cut(s)	120, 248, 865
TasI	AATT	2 cut(s)	73, 90
TatI	WGTACW	2 cut(s)	63, 438
TfiI	GAWTC	1 cut(s)	81
TscAI	CASTG	2 cut(s)	227, 374
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	3 cut(s)	16, 157, 467
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	2 cut(s)	60, 708
TspGWI	ACGGA	1 cut(s)	871
TspRI	CASTG	2 cut(s)	227, 374
VpaK11BI	GGWCC	2 cut(s)	496, 611
XapI	RAATTY	1 cut(s)	90
XceI	RCATGY	1 cut(s)	609
XhoI	CTCGAG	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.