Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0015506

Physical Location & Seq

Genomic Coordinates Forward (+)

28628308 .. 28631559

Gene Structure 3252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1253000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTCTCGGCCGGAGCTGCAAGCTCCACCCGAGATATTCTACAATGAAGAGGAAGCTCGAAAGTACACTCGCAATTCCCGAATCATGGAAATTCAGTCGGAGCTCTCCCACCGAGCCCTAGAGCTTCTCGCTCTCCCCGACGACGGCGTCCCCAGGCTGCTCCTCGATATTGGTAGTTGTGGGTCGGGGCTCAGCGGAGATACATTGTCAGAGAGTGGGCATCAGTGGATTGGTTTAGATATTTCCCAGTCGATGCTTGATGTGGCATTGGAGAATGAGGTTGAGGGTGATCTTTTGCTCGGGGACATGGGTCAGGGCTTTGGACTTCGTTCAGGAGTTATTGATGGAGCGATAAGCATCTCAGCCGTTCAGTGGTTGTGCAATGCTGATAAGTCATCACATAATCCACGATTACGATTGAAGGCTTTCTTTGGATCATTATACAGATGCTTAGCAAGGGGAGCAAGGGCAGCATTTCAAGTTTATCCTGAAAATCTGGACCAGCGCGAGTTGATTTTGAGTTCTGCAATGCGTGCTGGATTTGCGGGGGGTGTCGTTGTTGATTTTCCCAACAGTTCCAAGAAACGAAAGGAGTACCTTGTCCTCACTTGCAATTCACCATCTATTACCACTTCTACTCCCAAGGGAAAAGGCGAAGATGGCGAGGGTTCCACTGATGATGAGAGTAGTGAAGATGAAGAAAATCAGACAGTTTCAAACTCAGACAGGCACAGGCCGAGGAAAAAGCAGAAGACAAATAAGAAAGGCAAGGGAAGAGAATGGATACTAAAGAAGAAGGAACAGATGAGAAAAAAGGGAAATGTTGTTCCACCAGACACCAAATACACAGCTCGGAAAAGAAAAGCTCGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009611 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010467 GO:0016070 GO:0016072 GO:0016435 GO:0016740 GO:0016741 GO:0019827 GO:0022613 GO:0022622 GO:0031167 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0036265 GO:0042060 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0070013 GO:0070475 GO:0070476 GO:0071704 GO:0071840 GO:0090304 GO:0090696 GO:0098727 GO:0099402 GO:0140098 GO:0140102 GO:1901360 GO:1905392 GO:1990110

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 WBS_methylT

Protein Analysis

292

Amino Acids

32.3

Weight (kDa)

8.76

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	55 - 157	2.6e-06	Methyltransferase domain
WBS_methylT	PF12589	209 - 289	9.9e-22	Methyltransferase involved in Williams-Beuren syndrome

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57280
fragaria_vesca	FvH4_4g07620
malus_domestica	MD13G1245300.v1.1 MD16G1253000.v1.1
prunus_persica	Prupe.1G079400_v2.0.a1
pyrus_communis	pycom13g21630
rosa_chinensis	RchiOBHm_Chr4g0400231
rosa_laevigata	RLG00000009202
rosa_multiflora	Rmu_sc0004338.1_g000003
rosa_roxburghii	Rroxscaffold_5G00345190
rosa_rugosa	Rorug04G0024000
rosa_samantha	Rh4AG099000 Rh4BG097300 Rh4CG108500 Rh4DG094000
rosa_wichuraiana	Rw4G008230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AccII	CGCG	1 cut(s)	507
AciI	CCGC	2 cut(s)	195, 545
AclWI	GGATC	1 cut(s)	442
AcoI	YGGCCR	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	2 cut(s)	65, 596
AfiI	CCNNNNNNNGG	3 cut(s)	85, 143, 372
AgsI	TTSAA	3 cut(s)	421, 479, 717
AjnI	CCWGG	1 cut(s)	152
AloI	GAACNNNNNNTCC	2 cut(s)	810, 842
AluBI	AGCT	7 cut(s)	16, 23, 56, 103, 124, 851, 866
AluI	AGCT	7 cut(s)	16, 23, 56, 103, 124, 851, 866
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	442
Ama87I	CYCGRG	2 cut(s)	29, 299
AoxI	GGCC	2 cut(s)	8, 734
ApeKI	GCWGC	3 cut(s)	16, 157, 470
ApoI	RAATTY	1 cut(s)	90
Asp700I	GAANNNNTTC	1 cut(s)	425
AspLEI	GCGC	1 cut(s)	507
AspS9I	GGNCC	1 cut(s)	499
AsuHPI	GGTGA	2 cut(s)	299, 609
AvaI	CYCGRG	2 cut(s)	29, 299
AvaII	GGWCC	1 cut(s)	499
BanII	GRGCYC	3 cut(s)	105, 118, 192
BbsI	GAAGAC	1 cut(s)	758
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	3 cut(s)	3, 144, 482
BccI	CCATC	3 cut(s)	338, 628, 653
BceAI	ACGGC	2 cut(s)	160, 350
BciT130I	CCWGG	1 cut(s)	154
BciVI	GTATCC	1 cut(s)	777
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	119
BfuI	GTATCC	1 cut(s)	777
BisI	GCNGC	3 cut(s)	17, 158, 471
BlpI	GCTNAGC	2 cut(s)	191, 451
BlsI	GCNGC	3 cut(s)	18, 159, 472
Bme1390I	CCNGG	1 cut(s)	154
Bme18I	GGWCC	1 cut(s)	499
BmeT110I	CYCGRG	2 cut(s)	29, 299
BmgT120I	GGNCC	1 cut(s)	499
BmiI	GGNNCC	1 cut(s)	670
BmrFI	CCNGG	1 cut(s)	154
BmrI	ACTGGG	1 cut(s)	241
BmsI	GCATC	4 cut(s)	229, 243, 366, 437
BmuI	ACTGGG	1 cut(s)	241
BoxI	GACNNNNGTC	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	758
Bpu1102I	GCTNAGC	2 cut(s)	191, 451
BsaBI	GATNNNNATC	1 cut(s)	356
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	3 cut(s)	152, 642, 737
BsaXI	ACNNNNNCTCC	2 cut(s)	622, 652
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 143, 372
Bse1I	ACTGG	1 cut(s)	247
Bse3DI	GCAATG	2 cut(s)	388, 534
Bse8I	GATNNNNATC	1 cut(s)	356
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	3 cut(s)	152, 642, 737
BseJI	GATNNNNATC	1 cut(s)	356
BseLI	CCNNNNNNNGG	3 cut(s)	85, 143, 372
BseMI	GCAATG	2 cut(s)	388, 534
BseMII	CTCAG	3 cut(s)	205, 375, 735
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	1 cut(s)	152
BseX3I	CGGCCG	1 cut(s)	8
BseXI	GCAGC	3 cut(s)	3, 144, 482
Bsh1236I	CGCG	1 cut(s)	507
Bsh1285I	CGRYCG	1 cut(s)	11
BshFI	GGCC	2 cut(s)	10, 736
BsiEI	CGRYCG	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	105
BsiHKCI	CYCGRG	2 cut(s)	29, 299
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	2 cut(s)	134, 317
BslI	CCNNNNNNNGG	3 cut(s)	85, 143, 372
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	2 cut(s)	134, 317
BsnI	GGCC	2 cut(s)	10, 736
BsoBI	CYCGRG	2 cut(s)	29, 299
Bsp1286I	GDGCHC	3 cut(s)	105, 118, 192
Bsp143I	GATC	2 cut(s)	289, 434
Bsp1720I	GCTNAGC	2 cut(s)	191, 451
BspACI	CCGC	2 cut(s)	195, 545
BspANI	GGCC	2 cut(s)	10, 736
BspCNI	CTCAG	3 cut(s)	204, 374, 734
BspFNI	CGCG	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	670
BspPI	GGATC	1 cut(s)	442
BsrDI	GCAATG	2 cut(s)	388, 534
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	3 cut(s)	152, 642, 737
BssMI	GATC	2 cut(s)	289, 434
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	642
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	2 cut(s)	575, 712
Bst6I	CTCTTC	2 cut(s)	42, 769
BstACI	GRCGYC	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstC8I	GCNNGC	2 cut(s)	21, 534
BstDEI	CTNAG	4 cut(s)	191, 361, 451, 721
BstFNI	CGCG	1 cut(s)	507
BstHHI	GCGC	1 cut(s)	507
BstKTI	GATC	2 cut(s)	292, 437
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	289, 434
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	6 cut(s)	16, 461, 470, 533, 542, 660
BstNI	CCWGG	1 cut(s)	154
BstPAI	GACNNNNGTC	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	152
BstUI	CGCG	1 cut(s)	507
BstV1I	GCAGC	3 cut(s)	3, 144, 482
BstV2I	GAAGAC	1 cut(s)	758
BstZI	CGGCCG	1 cut(s)	8
BsuI	GTATCC	1 cut(s)	777
BsuRI	GGCC	2 cut(s)	10, 736
BtsIMutI	CAGTG	3 cut(s)	230, 377, 672
Cac8I	GCNNGC	2 cut(s)	21, 534
CfoI	GCGC	1 cut(s)	507
Cfr13I	GGNCC	1 cut(s)	499
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	64, 595
CviAII	CATG	2 cut(s)	85, 307
CviQI	GTAC	2 cut(s)	64, 595
DdeI	CTNAG	4 cut(s)	191, 361, 451, 721
DpnI	GATC	2 cut(s)	291, 436
DpnII	GATC	2 cut(s)	289, 434
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
EaeI	YGGCCR	1 cut(s)	8
EagI	CGGCCG	1 cut(s)	8
Eam1104I	CTCTTC	2 cut(s)	42, 769
EarI	CTCTTC	2 cut(s)	42, 769
Ecl136II	GAGCTC	1 cut(s)	103
EclXI	CGGCCG	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	642
Eco24I	GRGCYC	3 cut(s)	105, 118, 192
Eco47I	GGWCC	1 cut(s)	499
Eco52I	CGGCCG	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	103
Eco88I	CYCGRG	2 cut(s)	29, 299
EcoICRI	GAGCTC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	642
EcoT38I	GRGCYC	3 cut(s)	105, 118, 192
ErhI	CCWWGG	1 cut(s)	642
FaeI	CATG	2 cut(s)	88, 310
FaiI	YATR	4 cut(s)	86, 308, 402, 442
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FaqI	GGGAC	2 cut(s)	134, 317
FatI	CATG	2 cut(s)	84, 306
FauI	CCCGC	1 cut(s)	538
Fnu4HI	GCNGC	3 cut(s)	17, 158, 471
FriOI	GRGCYC	3 cut(s)	105, 118, 192
Fsp4HI	GCNGC	3 cut(s)	17, 158, 471
FspBI	CTAG	1 cut(s)	119
GlaI	GCGC	1 cut(s)	506
GluI	GCNGC	3 cut(s)	17, 158, 471
HaeIII	GGCC	2 cut(s)	10, 736
HapII	CCGG	1 cut(s)	11
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	507
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	88, 310
Hin6I	GCGC	1 cut(s)	505
HinP1I	GCGC	1 cut(s)	505
HinfI	GANTC	1 cut(s)	81
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	2 cut(s)	299, 609
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	5 cut(s)	100, 211, 708, 724, 855
Hpy188III	TCNNGA	4 cut(s)	78, 333, 488, 497
Hpy8I	GTNNAC	1 cut(s)	66
Hpy99I	CGWCG	2 cut(s)	143, 146
HpyAV	CCTTC	2 cut(s)	415, 790
HpyCH4III	ACNGT	2 cut(s)	575, 712
HpyCH4V	TGCA	4 cut(s)	19, 381, 527, 612
HpyF10VI	GCNNNNNNNGC	6 cut(s)	16, 461, 470, 533, 542, 660
HpyF3I	CTNAG	4 cut(s)	191, 361, 451, 721
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	88, 310
HspAI	GCGC	1 cut(s)	505
Kzo9I	GATC	2 cut(s)	289, 434
LmnI	GCTCC	6 cut(s)	13, 28, 100, 165, 347, 461
Lsp1109I	GCAGC	3 cut(s)	3, 144, 482
LweI	GCATC	4 cut(s)	229, 243, 366, 437
MaeI	CTAG	1 cut(s)	119
MalI	GATC	2 cut(s)	291, 436
MboI	GATC	2 cut(s)	289, 434
MboII	GAAGA	7 cut(s)	59, 668, 704, 710, 763, 786, 805
MhlI	GDGCHC	3 cut(s)	105, 118, 192
MluCI	AATT	3 cut(s)	73, 90, 613
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	7 cut(s)	43, 173, 271, 277, 614, 658, 732
MroXI	GAANNNNTTC	1 cut(s)	425
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	154
MvaI	CCWGG	1 cut(s)	154
MvnI	CGCG	1 cut(s)	507
MwoI	GCNNNNNNNGC	6 cut(s)	16, 461, 470, 533, 542, 660
NdeII	GATC	2 cut(s)	289, 434
NlaIII	CATG	2 cut(s)	88, 310
NlaIV	GGNNCC	1 cut(s)	670
NmeAIII	GCCGAG	1 cut(s)	762
PcsI	WCGNNNNNNNCGW	2 cut(s)	76, 135
PdmI	GAANNNNTTC	1 cut(s)	425
PfeI	GAWTC	1 cut(s)	81
PflFI	GACNNNGTC	1 cut(s)	146
PkrI	GCNGC	3 cut(s)	18, 159, 472
PshAI	GACNNNNGTC	1 cut(s)	309
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	670
PspPI	GGNCC	1 cut(s)	499
PsyI	GACNNNGTC	1 cut(s)	146
RsaI	GTAC	2 cut(s)	65, 596
RsaNI	GTAC	2 cut(s)	64, 595
SacI	GAGCTC	1 cut(s)	105
SatI	GCNGC	3 cut(s)	17, 158, 471
Sau3AI	GATC	2 cut(s)	289, 434
Sau96I	GGNCC	1 cut(s)	499
ScrFI	CCNGG	1 cut(s)	154
SduI	GDGCHC	3 cut(s)	105, 118, 192
SetI	ASST	9 cut(s)	18, 25, 58, 105, 126, 282, 600, 853, 868
SfaNI	GCATC	4 cut(s)	229, 243, 366, 437
SinI	GGWCC	1 cut(s)	499
Sse9I	AATT	3 cut(s)	73, 90, 613
SsiI	CCGC	2 cut(s)	195, 545
SspMI	CTAG	1 cut(s)	119
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	642
TaaI	ACNGT	2 cut(s)	575, 712
TaqI	TCGA	4 cut(s)	58, 165, 251, 868
TasI	AATT	3 cut(s)	73, 90, 613
TatI	WGTACW	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	81
TscAI	CASTG	3 cut(s)	230, 377, 679
TseI	GCWGC	3 cut(s)	16, 157, 470
TspDTI	ATGAA	2 cut(s)	60, 711
TspRI	CASTG	3 cut(s)	230, 377, 679
Tth111I	GACNNNGTC	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	499
XapI	RAATTY	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	425
XspI	CTAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.