Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0015506

Physical Location & Seq

Genomic Coordinates Reverse (-)

14121527 .. 14124152

Gene Structure 2626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG094000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGTCTCGGCCGGAGCTTCAAAACCCGCCGGAGATATTCTACAATGACGACGAAGCACGCAAGTACACTCGCAACTCCCGCATCATGGAGATTCAGTCCGAGCTCTCCGAGCGCGCCCTCGAGCTTCTCGCTCTGCCGGAAGATGACGCCCCCAGGTTGCTTCTCGACATCGGTTGTGGCTCTGGGCTTAGCGGTGAGACCTTGTCCGAAAGTGGGCATCAGTGGATTGGTTTAGATATTTCCCAATCAATGCTTGATGTTGCACTGGAAAATGAGGTTAAGGGTGACCTTTTGCTTGCGGACATGGGCCAGGGGTTAGGACTTCGTTCCGGAGTTATTGATGGAGCCATAAGTATCTCAGCTGTTCAGTGGTTGTGCAATGCTGACAAATCCTCACATAATCCACGATTAAGATTGAAGGCTTTCTTTGGGTCATTGTACAGATGCTTATCTAGGGGAGCAAAAGCTGCATTTCAAATGTATCCAGAAAATCTAGACCAGCGGGAATTGATTGTGAGTTCTGCAATGCGTGCTGGATTTTCTGGTGGTATCGTCGTTGATTATCCCAACAGTTCCAAGAAAAGAAAAGAATACCTAGTCCTCACGTGTGGTCCACCATCTGTCAACACATCGGTTCCTGAGGGTAAAAGTGAGGATGGAGATAGTTCCTTTGATGACGATAGTAGTGGAGATGAAGAAAATCAGACAGTTTCCATTTCAGACAGGCACAGGCCCAGGAAAAAGCAGAGAATAACAAAGAAAGGTAAGGGGAGAGATTGGATACTGAAGAAGAAGGAACAGATGAGAAGAAAAGGAAATGTTGTTCCTCCAGACACAAAGTACACTGCTCGGAAACGAAAGGCTCGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009611 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010467 GO:0016070 GO:0016072 GO:0016435 GO:0016740 GO:0016741 GO:0019827 GO:0022613 GO:0022622 GO:0031167 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0036265 GO:0042060 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0070013 GO:0070475 GO:0070476 GO:0071704 GO:0071840 GO:0090304 GO:0090696 GO:0098727 GO:0099402 GO:0140098 GO:0140102 GO:1901360 GO:1905392 GO:1990110

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 WBS_methylT

Protein Analysis

290

Amino Acids

32.31

Weight (kDa)

8.56

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	55 - 156	1.3e-09	Methyltransferase domain
Methyltransf_25	PF13649	55 - 129	2.5e-08	Methyltransferase domain
WBS_methylT	PF12589	201 - 288	2e-24	Methyltransferase involved in Williams-Beuren syndrome

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57280
fragaria_vesca	FvH4_4g07620
malus_domestica	MD13G1245300.v1.1 MD16G1253000.v1.1
prunus_persica	Prupe.1G079400_v2.0.a1
pyrus_communis	pycom13g21630
rosa_chinensis	RchiOBHm_Chr4g0400231
rosa_laevigata	RLG00000009202
rosa_multiflora	Rmu_sc0004338.1_g000003
rosa_roxburghii	Rroxscaffold_5G00345190
rosa_rugosa	Rorug04G0024000
rosa_samantha	Rh4AG099000 Rh4BG097300 Rh4CG108500 Rh4DG094000
rosa_wichuraiana	Rw4G008230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	114
AccIII	TCCGGA	1 cut(s)	329
AciI	CCGC	5 cut(s)	26, 79, 192, 299, 502
AcoI	YGGCCR	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	806
AcvI	CACGTG	1 cut(s)	606
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	3 cut(s)	65, 440, 842
AfiI	CCNNNNNNNGG	2 cut(s)	85, 213
AflIII	ACRYGT	1 cut(s)	605
AgsI	TTSAA	3 cut(s)	20, 418, 476
AjnI	CCWGG	3 cut(s)	152, 309, 734
AloI	GAACNNNNNNTCC	2 cut(s)	807, 839
AluBI	AGCT	5 cut(s)	16, 103, 124, 362, 467
AluI	AGCT	5 cut(s)	16, 103, 124, 362, 467
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	9, 191
Ama87I	CYCGRG	1 cut(s)	119
Aor13HI	TCCGGA	1 cut(s)	329
AoxI	GGCC	3 cut(s)	8, 307, 731
ApeKI	GCWGC	1 cut(s)	467
Asp700I	GAANNNNTTC	1 cut(s)	422
AspLEI	GCGC	2 cut(s)	114, 116
AspS9I	GGNCC	3 cut(s)	307, 611, 732
AsuHPI	GGTGA	2 cut(s)	206, 296
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	611
AxyI	CCTNAGG	1 cut(s)	639
BanII	GRGCYC	1 cut(s)	105
BbrPI	CACGTG	1 cut(s)	606
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	454
BccI	CCATC	3 cut(s)	335, 625, 650
BciT130I	CCWGG	3 cut(s)	154, 311, 736
BciVI	GTATCC	2 cut(s)	492, 774
BcoDI	GTCTC	2 cut(s)	9, 191
BfaI	CTAG	3 cut(s)	453, 494, 596
BfuI	GTATCC	2 cut(s)	492, 774
BisI	GCNGC	1 cut(s)	468
BlpI	GCTNAGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	469
Bme1390I	CCNGG	3 cut(s)	154, 311, 736
Bme18I	GGWCC	1 cut(s)	611
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	3 cut(s)	307, 611, 732
BmiI	GGNNCC	2 cut(s)	346, 636
BmrFI	CCNGG	3 cut(s)	154, 311, 736
BmsI	GCATC	3 cut(s)	90, 226, 434
BpmI	CTGGAG	1 cut(s)	813
Bpu1102I	GCTNAGC	1 cut(s)	188
BsaAI	YACGTR	1 cut(s)	606
BsaBI	GATNNNNATC	1 cut(s)	448
BsaHI	GRCGYC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	3 cut(s)	152, 310, 734
BsaWI	WCCGGW	1 cut(s)	329
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 213
Bse1I	ACTGG	1 cut(s)	270
Bse21I	CCTNAGG	1 cut(s)	639
Bse3DI	GCAATG	2 cut(s)	385, 531
Bse8I	GATNNNNATC	1 cut(s)	448
BseAI	TCCGGA	1 cut(s)	329
BseBI	CCWGG	3 cut(s)	154, 311, 736
BseDI	CCNNGG	3 cut(s)	152, 310, 734
BseGI	GGATG	1 cut(s)	661
BseJI	GATNNNNATC	1 cut(s)	448
BseLI	CCNNNNNNNGG	2 cut(s)	85, 213
BseMI	GCAATG	2 cut(s)	385, 531
BseMII	CTCAG	2 cut(s)	372, 630
BseNI	ACTGG	1 cut(s)	270
BsePI	GCGCGC	1 cut(s)	112
BseX3I	CGGCCG	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	454
Bsh1236I	CGCG	1 cut(s)	114
Bsh1285I	CGRYCG	1 cut(s)	11
BshFI	GGCC	3 cut(s)	10, 309, 733
BsiEI	CGRYCG	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	4 cut(s)	11, 29, 137, 330
BslI	CCNNNNNNNGG	2 cut(s)	85, 213
BsmAI	GTCTC	2 cut(s)	9, 191
BsnI	GGCC	3 cut(s)	10, 309, 733
Bso31I	GGTCTC	1 cut(s)	191
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp13I	TCCGGA	1 cut(s)	329
Bsp1407I	TGTACA	1 cut(s)	438
Bsp1720I	GCTNAGC	1 cut(s)	188
BspACI	CCGC	5 cut(s)	26, 79, 192, 299, 502
BspANI	GGCC	3 cut(s)	10, 309, 733
BspCNI	CTCAG	2 cut(s)	371, 631
BspEI	TCCGGA	1 cut(s)	329
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	346, 636
BspTNI	GGTCTC	1 cut(s)	191
BsrDI	GCAATG	2 cut(s)	385, 531
BsrGI	TGTACA	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	3 cut(s)	152, 310, 734
BssHII	GCGCGC	1 cut(s)	112
BssNI	GRCGYC	1 cut(s)	147
Bst2UI	CCWGG	3 cut(s)	154, 311, 736
Bst4CI	ACNGT	2 cut(s)	572, 709
BstACI	GRCGYC	1 cut(s)	147
BstAPI	GCANNNNNTGC	2 cut(s)	467, 530
BstAUI	TGTACA	1 cut(s)	438
BstBAI	YACGTR	1 cut(s)	606
BstC8I	GCNNGC	5 cut(s)	58, 114, 297, 531, 865
BstDEI	CTNAG	3 cut(s)	188, 358, 639
BstEII	GGTNACC	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	661
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	2 cut(s)	114, 116
BstMAI	GTCTC	2 cut(s)	9, 191
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 109, 467, 530
BstNI	CCWGG	3 cut(s)	154, 311, 736
BstPI	GGTNACC	1 cut(s)	284
BstSCI	CCNGG	3 cut(s)	152, 309, 734
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	1 cut(s)	454
BstZI	CGGCCG	1 cut(s)	8
Bsu36I	CCTNAGG	1 cut(s)	639
BsuI	GTATCC	2 cut(s)	492, 774
BsuRI	GGCC	3 cut(s)	10, 309, 733
BtsCI	GGATG	1 cut(s)	661
BtsI	GCAGTG	1 cut(s)	843
BtsIMutI	CAGTG	4 cut(s)	227, 263, 374, 843
Cac8I	GCNNGC	5 cut(s)	58, 114, 297, 531, 865
CfoI	GCGC	2 cut(s)	114, 116
Cfr13I	GGNCC	3 cut(s)	307, 611, 732
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	3 cut(s)	64, 439, 841
CviAII	CATG	2 cut(s)	85, 304
CviQI	GTAC	3 cut(s)	64, 439, 841
DdeI	CTNAG	3 cut(s)	188, 358, 639
EaeI	YGGCCR	1 cut(s)	8
EagI	CGGCCG	1 cut(s)	8
Ecl136II	GAGCTC	1 cut(s)	103
EclXI	CGGCCG	1 cut(s)	8
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	611
Eco52I	CGGCCG	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	806
Eco72I	CACGTG	1 cut(s)	606
Eco81I	CCTNAGG	1 cut(s)	639
Eco88I	CYCGRG	1 cut(s)	119
Eco91I	GGTNACC	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	284
EcoRII	CCWGG	3 cut(s)	152, 309, 734
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	2 cut(s)	88, 307
FaiI	YATR	4 cut(s)	86, 305, 350, 399
FalI	AAGNNNNNCTT	3 cut(s)	410, 442, 851
FatI	CATG	2 cut(s)	84, 303
FauI	CCCGC	3 cut(s)	33, 86, 495
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	1 cut(s)	668
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	3 cut(s)	453, 494, 596
GlaI	GCGC	2 cut(s)	113, 115
GluI	GCNGC	1 cut(s)	468
GsuI	CTGGAG	1 cut(s)	813
HaeIII	GGCC	3 cut(s)	10, 309, 733
HapII	CCGG	4 cut(s)	11, 29, 137, 330
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	2 cut(s)	114, 116
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	88, 307
Hin6I	GCGC	2 cut(s)	112, 114
HinP1I	GCGC	2 cut(s)	112, 114
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	4 cut(s)	11, 29, 137, 330
HphI	GGTGA	2 cut(s)	206, 296
Hpy166II	GTNNAC	4 cut(s)	66, 614, 625, 843
Hpy188I	TCNGA	6 cut(s)	100, 109, 208, 705, 721, 852
Hpy188III	TCNNGA	6 cut(s)	164, 330, 485, 494, 638, 830
Hpy8I	GTNNAC	4 cut(s)	66, 614, 625, 843
Hpy99I	CGWCG	2 cut(s)	53, 557
HpyAV	CCTTC	2 cut(s)	412, 787
HpyCH4III	ACNGT	2 cut(s)	572, 709
HpyCH4IV	ACGT	1 cut(s)	605
HpyCH4V	TGCA	4 cut(s)	263, 378, 470, 524
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 109, 467, 530
HpyF3I	CTNAG	3 cut(s)	188, 358, 639
HpySE526I	ACGT	1 cut(s)	605
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	88, 307
HspAI	GCGC	2 cut(s)	112, 114
Kpn2I	TCCGGA	1 cut(s)	329
LmnI	GCTCC	3 cut(s)	13, 344, 458
Lsp1109I	GCAGC	1 cut(s)	454
LweI	GCATC	3 cut(s)	90, 226, 434
MaeI	CTAG	3 cut(s)	453, 494, 596
MaeII	ACGT	1 cut(s)	605
MaeIII	GTNAC	1 cut(s)	284
MboII	GAAGA	5 cut(s)	152, 707, 799, 802, 819
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	1 cut(s)	506
MnlI	CCTC	7 cut(s)	128, 268, 403, 611, 634, 646, 837
MroI	TCCGGA	1 cut(s)	329
MroXI	GAANNNNTTC	1 cut(s)	422
MseI	TTAA	2 cut(s)	279, 410
MspA1I	CMGCKG	2 cut(s)	362, 502
MspI	CCGG	4 cut(s)	11, 29, 137, 330
MspR9I	CCNGG	3 cut(s)	154, 311, 736
MvaI	CCWGG	3 cut(s)	154, 311, 736
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	4 cut(s)	78, 109, 467, 530
NlaIII	CATG	2 cut(s)	88, 307
NlaIV	GGNNCC	2 cut(s)	346, 636
NmuCI	GTSAC	1 cut(s)	284
PaeR7I	CTCGAG	1 cut(s)	119
PauI	GCGCGC	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	422
PfeI	GAWTC	1 cut(s)	91
PflFI	GACNNNGTC	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	469
PmaCI	CACGTG	1 cut(s)	606
PmlI	CACGTG	1 cut(s)	606
Ppu21I	YACGTR	1 cut(s)	606
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	3 cut(s)	152, 309, 734
PspCI	CACGTG	1 cut(s)	606
PspEI	GGTNACC	1 cut(s)	284
PspGI	CCWGG	3 cut(s)	152, 309, 734
PspN4I	GGNNCC	2 cut(s)	346, 636
PspPI	GGNCC	3 cut(s)	307, 611, 732
PspXI	VCTCGAGB	1 cut(s)	119
PsyI	GACNNNGTC	1 cut(s)	202
PteI	GCGCGC	1 cut(s)	112
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	3 cut(s)	65, 440, 842
RsaNI	GTAC	3 cut(s)	64, 439, 841
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	279, 410
SatI	GCNGC	1 cut(s)	468
Sau96I	GGNCC	3 cut(s)	307, 611, 732
ScrFI	CCNGG	3 cut(s)	154, 311, 736
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	3 cut(s)	90, 226, 434
Sfr274I	CTCGAG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	611
SlaI	CTCGAG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	1 cut(s)	506
SsiI	CCGC	5 cut(s)	26, 79, 192, 299, 502
SspMI	CTAG	3 cut(s)	453, 494, 596
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	3 cut(s)	152, 309, 734
TaaI	ACNGT	2 cut(s)	572, 709
TaiI	ACGT	1 cut(s)	608
TaqI	TCGA	2 cut(s)	120, 165
TasI	AATT	1 cut(s)	506
TatI	WGTACW	3 cut(s)	63, 438, 840
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	2 cut(s)	279, 410
Tru9I	TTAA	2 cut(s)	279, 410
TscAI	CASTG	4 cut(s)	227, 270, 374, 850
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	1 cut(s)	708
TspRI	CASTG	4 cut(s)	227, 270, 374, 850
Tth111I	GACNNNGTC	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	611
XbaI	TCTAGA	1 cut(s)	493
XhoI	CTCGAG	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	422
XspI	CTAG	3 cut(s)	453, 494, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.