Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015506

Physical Location & Seq

Genomic Coordinates Reverse (-)

7023892 .. 7026992

Gene Structure 3101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g07620.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGTCTCGGCCGGAGCTCCAAAACCCGCCGGAGATTTTCTACAATGACGAGGAAGCTCGCAAGTACACTCGCAACTCCCGCATCATGGAGATTCAGTCCGAGCTCTCCGACCGGGCCCTCGAGCTTCTCGCTCTGCCGCAAGATGACGTCCCCAGGTTGCTGCTCGACATAGGTTGCGGCTCTGGGCTTAGCGGAGAGACCTTGTCTGATAATGGGCATCACTGGATTGGTTTAGATATTTCTCATTCCATGCTTGATGTTGCACTGGAAAATGAGGTTAAGGGTGACCTTTTGCTTGCAGACATGGGCCAGGGGTTAGGACTTCGTTCAGGAGTTATTGACGGTGCCATAAGTATCTCAGCTGTTCAGTGGTTGTGCAATGCTGACAAGTCCTCTCATAATCCACGATTAAGATTGAAGGCTTTCTTTGGGTCACTGTATAGATGTTTAGCTAGGGGAGCAAAAGCTGCATTTCAAATGTATCCAGAAAATATAGACCAGCGGGAATTGATTGTGAGTTCTGCAATGCGTGCTGGATTTTCTGGTGGTATCGTTGTTGATTATCCAAACAGTTCCAAGAAAAGAAAAGAATACCTAGTCCTCACATGTGGTCCGCCATCTGTCAACACATCGGTTCCCGAGGGTAAAAGTGAGGATGGAGATAGTTCCTCTGATGAAGATAGTAGTGAAGATGAAGAAAATCAGACAGTATCCATTTCAGACAGGCACAGGCCAAGGAAAAAGCAGAGAACAACAAAGAAAGGTAAGGGGAGAGATTGGATACTGAAGAAGAAGGAACAGAGTAGAAGAAAAGGGAATGTTGTTCCTCCAGATACAAGGTACACTGGTCGGAAACGAAAGGCTCGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009611 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010467 GO:0016070 GO:0016072 GO:0016435 GO:0016740 GO:0016741 GO:0019827 GO:0022613 GO:0022622 GO:0031167 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0036265 GO:0042060 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0070013 GO:0070475 GO:0070476 GO:0071704 GO:0071840 GO:0090304 GO:0090696 GO:0098727 GO:0099402 GO:0140098 GO:0140102 GO:1901360 GO:1905392 GO:1990110

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 WBS_methylT

Protein Analysis

291

Amino Acids

32.34

Weight (kDa)

8.57

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	55 - 156	1.9e-09	Methyltransferase domain
Methyltransf_25	PF13649	55 - 129	4.4e-08	Methyltransferase domain
WBS_methylT	PF12589	201 - 288	3.5e-24	Methyltransferase involved in Williams-Beuren syndrome

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57280
fragaria_vesca	FvH4_4g07620
malus_domestica	MD13G1245300.v1.1 MD16G1253000.v1.1
prunus_persica	Prupe.1G079400_v2.0.a1
pyrus_communis	pycom13g21630
rosa_chinensis	RchiOBHm_Chr4g0400231
rosa_laevigata	RLG00000009202
rosa_multiflora	Rmu_sc0004338.1_g000003
rosa_roxburghii	Rroxscaffold_5G00345190
rosa_rugosa	Rorug04G0024000
rosa_samantha	Rh4AG099000 Rh4BG097300 Rh4CG108500 Rh4DG094000
rosa_wichuraiana	Rw4G008230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	344
AciI	CCGC	7 cut(s)	26, 79, 137, 177, 192, 502, 614
AcoI	YGGCCR	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	806
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	2 cut(s)	65, 842
AfiI	CCNNNNNNNGG	1 cut(s)	85
AflIII	ACRYGT	1 cut(s)	605
AgsI	TTSAA	2 cut(s)	418, 476
AjnI	CCWGG	2 cut(s)	152, 309
AluBI	AGCT	7 cut(s)	16, 56, 103, 124, 362, 452, 467
AluI	AGCT	7 cut(s)	16, 56, 103, 124, 362, 452, 467
Alw21I	GWGCWC	2 cut(s)	18, 105
Alw26I	GTCTC	2 cut(s)	9, 191
Ama87I	CYCGRG	2 cut(s)	119, 638
AoxI	GGCC	4 cut(s)	8, 114, 307, 731
ApaI	GGGCCC	1 cut(s)	118
ApeKI	GCWGC	2 cut(s)	160, 467
Asp700I	GAANNNNTTC	1 cut(s)	422
AspS9I	GGNCC	4 cut(s)	114, 115, 307, 611
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	296
AvaI	CYCGRG	2 cut(s)	119, 638
AvaII	GGWCC	1 cut(s)	611
BaeGI	GKGCMC	1 cut(s)	118
BaeI	ACNNNNGTAYC	2 cut(s)	832, 865
BanI	GGYRCC	1 cut(s)	344
BanII	GRGCYC	3 cut(s)	18, 105, 118
Bbv12I	GWGCWC	2 cut(s)	18, 105
BbvI	GCAGC	2 cut(s)	147, 454
BccI	CCATC	2 cut(s)	625, 650
BciT130I	CCWGG	2 cut(s)	154, 311
BciVI	GTATCC	3 cut(s)	492, 721, 774
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	2 cut(s)	9, 191
BfaI	CTAG	2 cut(s)	453, 596
BfuI	GTATCC	3 cut(s)	492, 721, 774
BisI	GCNGC	4 cut(s)	137, 161, 178, 468
BlpI	GCTNAGC	1 cut(s)	188
BlsI	GCNGC	4 cut(s)	138, 162, 179, 469
Bme1390I	CCNGG	3 cut(s)	113, 154, 311
Bme18I	GGWCC	1 cut(s)	611
BmeT110I	CYCGRG	2 cut(s)	119, 638
BmgT120I	GGNCC	4 cut(s)	114, 115, 307, 611
BmiI	GGNNCC	3 cut(s)	116, 346, 636
BmrFI	CCNGG	3 cut(s)	113, 154, 311
BmsI	GCATC	2 cut(s)	90, 226
BpmI	CTGGAG	1 cut(s)	813
Bpu1102I	GCTNAGC	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	4 cut(s)	152, 310, 639, 734
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse1I	ACTGG	3 cut(s)	227, 270, 850
Bse3DI	GCAATG	2 cut(s)	385, 531
BseBI	CCWGG	2 cut(s)	154, 311
BseDI	CCNNGG	4 cut(s)	152, 310, 639, 734
BseGI	GGATG	1 cut(s)	661
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMI	GCAATG	2 cut(s)	385, 531
BseMII	CTCAG	1 cut(s)	372
BseNI	ACTGG	3 cut(s)	227, 270, 850
BseSI	GKGCMC	1 cut(s)	118
BseX3I	CGGCCG	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	147, 454
Bsh1285I	CGRYCG	2 cut(s)	11, 112
BshFI	GGCC	4 cut(s)	10, 116, 309, 733
BshNI	GGYRCC	1 cut(s)	344
BsiEI	CGRYCG	2 cut(s)	11, 112
BsiHKAI	GWGCWC	2 cut(s)	18, 105
BsiHKCI	CYCGRG	2 cut(s)	119, 638
BsiSI	CCGG	3 cut(s)	11, 29, 112
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	2 cut(s)	9, 191
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	4 cut(s)	10, 116, 309, 733
Bso31I	GGTCTC	1 cut(s)	191
BsoBI	CYCGRG	2 cut(s)	119, 638
Bsp120I	GGGCCC	1 cut(s)	114
Bsp1286I	GDGCHC	3 cut(s)	18, 105, 118
Bsp1720I	GCTNAGC	1 cut(s)	188
BspACI	CCGC	7 cut(s)	26, 79, 137, 177, 192, 502, 614
BspANI	GGCC	4 cut(s)	10, 116, 309, 733
BspCNI	CTCAG	1 cut(s)	371
BspLI	GGNNCC	3 cut(s)	116, 346, 636
BspT107I	GGYRCC	1 cut(s)	344
BspTNI	GGTCTC	1 cut(s)	191
BsrDI	GCAATG	2 cut(s)	385, 531
BsrI	ACTGG	3 cut(s)	227, 270, 850
BssECI	CCNNGG	4 cut(s)	152, 310, 639, 734
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	734
Bst2UI	CCWGG	2 cut(s)	154, 311
Bst4CI	ACNGT	4 cut(s)	344, 438, 572, 709
BstACI	GRCGYC	1 cut(s)	147
BstAPI	GCANNNNNTGC	2 cut(s)	467, 530
BstC8I	GCNNGC	4 cut(s)	58, 297, 531, 865
BstDEI	CTNAG	2 cut(s)	188, 358
BstEII	GGTNACC	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	661
BstMAI	GTCTC	2 cut(s)	9, 191
BstMCI	CGRYCG	2 cut(s)	11, 112
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 458, 467, 530
BstNI	CCWGG	2 cut(s)	154, 311
BstNSI	RCATGY	1 cut(s)	609
BstPI	GGTNACC	1 cut(s)	284
BstSCI	CCNGG	3 cut(s)	111, 152, 309
BstSLI	GKGCMC	1 cut(s)	118
BstV1I	GCAGC	2 cut(s)	147, 454
BstZI	CGGCCG	1 cut(s)	8
BsuI	GTATCC	3 cut(s)	492, 721, 774
BsuRI	GGCC	4 cut(s)	10, 116, 309, 733
BtsCI	GGATG	1 cut(s)	661
BtsIMutI	CAGTG	5 cut(s)	220, 263, 374, 434, 843
Cac8I	GCNNGC	4 cut(s)	58, 297, 531, 865
Cfr13I	GGNCC	4 cut(s)	114, 115, 307, 611
Csp6I	GTAC	2 cut(s)	64, 841
CviAII	CATG	4 cut(s)	85, 250, 304, 606
CviQI	GTAC	2 cut(s)	64, 841
DdeI	CTNAG	2 cut(s)	188, 358
EaeI	YGGCCR	1 cut(s)	8
EagI	CGGCCG	1 cut(s)	8
EciI	GGCGGA	1 cut(s)	603
Ecl136II	GAGCTC	2 cut(s)	16, 103
EclXI	CGGCCG	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	734
Eco24I	GRGCYC	3 cut(s)	18, 105, 118
Eco31I	GGTCTC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	611
Eco52I	CGGCCG	1 cut(s)	8
Eco53kI	GAGCTC	2 cut(s)	16, 103
Eco57I	CTGAAG	1 cut(s)	806
Eco88I	CYCGRG	2 cut(s)	119, 638
Eco91I	GGTNACC	1 cut(s)	284
EcoICRI	GAGCTC	2 cut(s)	16, 103
EcoO109I	RGGNCCY	1 cut(s)	115
EcoO65I	GGTNACC	1 cut(s)	284
EcoRII	CCWGG	2 cut(s)	152, 309
EcoT14I	CCWWGG	1 cut(s)	734
EcoT38I	GRGCYC	3 cut(s)	18, 105, 118
ErhI	CCWWGG	1 cut(s)	734
FaeI	CATG	4 cut(s)	88, 253, 307, 609
FaiI	YATR	9 cut(s)	86, 170, 251, 305, 350, 399, 441, 494, 607
FalI	AAGNNNNNCTT	3 cut(s)	410, 442, 851
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	4 cut(s)	84, 249, 303, 605
FauI	CCCGC	3 cut(s)	33, 86, 495
Fnu4HI	GCNGC	4 cut(s)	137, 161, 178, 468
FokI	GGATG	1 cut(s)	668
FriOI	GRGCYC	3 cut(s)	18, 105, 118
Fsp4HI	GCNGC	4 cut(s)	137, 161, 178, 468
FspBI	CTAG	2 cut(s)	453, 596
GluI	GCNGC	4 cut(s)	137, 161, 178, 468
GsuI	CTGGAG	1 cut(s)	813
HaeIII	GGCC	4 cut(s)	10, 116, 309, 733
HapII	CCGG	3 cut(s)	11, 29, 112
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	4 cut(s)	88, 253, 307, 609
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	3 cut(s)	11, 29, 112
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	3 cut(s)	66, 625, 843
Hpy188I	TCNGA	7 cut(s)	100, 109, 208, 673, 705, 721, 852
Hpy188III	TCNNGA	4 cut(s)	330, 485, 638, 830
Hpy8I	GTNNAC	3 cut(s)	66, 625, 843
HpyAV	CCTTC	2 cut(s)	412, 787
HpyCH4III	ACNGT	4 cut(s)	344, 438, 572, 709
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	5 cut(s)	263, 299, 378, 470, 524
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 458, 467, 530
HpyF3I	CTNAG	2 cut(s)	188, 358
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	4 cut(s)	88, 253, 307, 609
LmnI	GCTCC	3 cut(s)	13, 21, 458
Lsp1109I	GCAGC	2 cut(s)	147, 454
LweI	GCATC	2 cut(s)	90, 226
MaeI	CTAG	2 cut(s)	453, 596
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	284, 432
MboII	GAAGA	6 cut(s)	689, 701, 707, 799, 802, 819
MhlI	GDGCHC	3 cut(s)	18, 105, 118
MluCI	AATT	1 cut(s)	506
MmeI	TCCRAC	2 cut(s)	132, 830
MnlI	CCTC	9 cut(s)	43, 128, 268, 403, 611, 634, 646, 679, 837
MroXI	GAANNNNTTC	1 cut(s)	422
MseI	TTAA	2 cut(s)	279, 410
MspA1I	CMGCKG	2 cut(s)	362, 502
MspI	CCGG	3 cut(s)	11, 29, 112
MspR9I	CCNGG	3 cut(s)	113, 154, 311
MvaI	CCWGG	2 cut(s)	154, 311
MwoI	GCNNNNNNNGC	4 cut(s)	78, 458, 467, 530
NciI	CCSGG	1 cut(s)	113
NlaIII	CATG	4 cut(s)	88, 253, 307, 609
NlaIV	GGNNCC	3 cut(s)	116, 346, 636
NmuCI	GTSAC	2 cut(s)	284, 432
NspI	RCATGY	1 cut(s)	609
PaeR7I	CTCGAG	1 cut(s)	119
PciI	ACATGT	1 cut(s)	605
PdmI	GAANNNNTTC	1 cut(s)	422
PfeI	GAWTC	1 cut(s)	91
PflFI	GACNNNGTC	1 cut(s)	202
PkrI	GCNGC	4 cut(s)	138, 162, 179, 469
PscI	ACATGT	1 cut(s)	605
Psp124BI	GAGCTC	2 cut(s)	18, 105
Psp6I	CCWGG	2 cut(s)	152, 309
PspEI	GGTNACC	1 cut(s)	284
PspGI	CCWGG	2 cut(s)	152, 309
PspN4I	GGNNCC	3 cut(s)	116, 346, 636
PspOMI	GGGCCC	1 cut(s)	114
PspPI	GGNCC	4 cut(s)	114, 115, 307, 611
PspXI	VCTCGAGB	1 cut(s)	119
PsyI	GACNNNGTC	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	2 cut(s)	65, 842
RsaNI	GTAC	2 cut(s)	64, 841
SacI	GAGCTC	2 cut(s)	18, 105
SaqAI	TTAA	2 cut(s)	279, 410
SatI	GCNGC	4 cut(s)	137, 161, 178, 468
Sau96I	GGNCC	4 cut(s)	114, 115, 307, 611
ScrFI	CCNGG	3 cut(s)	113, 154, 311
SduI	GDGCHC	3 cut(s)	18, 105, 118
SfaNI	GCATC	2 cut(s)	90, 226
Sfr274I	CTCGAG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	611
SlaI	CTCGAG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	1 cut(s)	506
SsiI	CCGC	7 cut(s)	26, 79, 137, 177, 192, 502, 614
SspMI	CTAG	2 cut(s)	453, 596
SstI	GAGCTC	2 cut(s)	18, 105
StyD4I	CCNGG	3 cut(s)	111, 152, 309
StyI	CCWWGG	1 cut(s)	734
TaaI	ACNGT	4 cut(s)	344, 438, 572, 709
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	120, 165
TasI	AATT	1 cut(s)	506
TatI	WGTACW	1 cut(s)	63
TauI	GCSGC	2 cut(s)	139, 180
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	2 cut(s)	279, 410
Tru9I	TTAA	2 cut(s)	279, 410
TscAI	CASTG	5 cut(s)	227, 270, 374, 441, 850
TseFI	GTSAC	2 cut(s)	284, 432
TseI	GCWGC	2 cut(s)	160, 467
Tsp45I	GTSAC	2 cut(s)	284, 432
TspDTI	ATGAA	2 cut(s)	690, 708
TspRI	CASTG	5 cut(s)	227, 270, 374, 441, 850
Tth111I	GACNNNGTC	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	611
XceI	RCATGY	1 cut(s)	609
XhoI	CTCGAG	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	422
XspI	CTAG	2 cut(s)	453, 596
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.