Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015506

Physical Location & Seq

Genomic Coordinates Forward (+)

5780037 .. 5783253

Gene Structure 3217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G079400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTCTCGGCCAGAGCTGCAAGCTCCACCTGAGATTTTCTACAATGAAGAGGAGGCTCGCAAGTACACTCGCAATTCTCGAATCATGGAAATTCAGTCAGAGCTCTCCCACCGAGCCCTCGAGCTTCTCGCTTTGCCTGAAGATGGCGTCCCCAGGTTGCTCCTCGACATTGGTTGTGGTTCGGGTCTTAGCGGAGATACATTGTCAGAGAGTGGGCATCAGTGGATTGGTTTAGATATTTCCCGGTCAATGCTTGATGTTGCACTGGAGAATGAGGTTGAGGGTGACCTTTTGATCGGGGACATGGGTCAGGGCTTAGGACTTCGTTCAGGAGTTATTGATGGAGCCATAAGTATCTCAGCCGTTCAGTGGTTGTGCAATGCTGATAAGTCCTCACATATTCCACGATTACGATTGAAGGCTTTCTTTGGATCATTGTACAGATGCTTAGCAAGGGGAGCAAGAGCAGCATTTCAAGTGTATCCTGAAAATCTAGACCAGCGAGAGCTGATTTTGAGTTCTGCAATGCGTGCTGGATTTGCTGGGGGTGTAGTTGTTGATTATCCCAACAGTTCCAAGAAAAGAAAAGAATACCTTGTCCTCACTTGTGGGCCACCATCTATTAGCACATCCACTCCCAATGGAAAAGGCGAAGATGGTGAGAGTTCCTCTGATGATGATAGTGAAGATGAAGACAATCAGACAGTTTCAATCTCAGACAGGCACAGGCCCAAGAAAAAACAGAAAATAACGAAGAAAGGCAAGGGAAGAGAATGGATAATAAAGAAGAAGGAACAGATGAGGAAAAAAGGAAATGTTGTTCCGCCAGACACAAAGTACACAGCTCGGAAACGTAAGGCTCGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009611 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010467 GO:0016070 GO:0016072 GO:0016435 GO:0016740 GO:0016741 GO:0019827 GO:0022613 GO:0022622 GO:0031167 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0036265 GO:0042060 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0070013 GO:0070475 GO:0070476 GO:0071704 GO:0071840 GO:0090304 GO:0090696 GO:0098727 GO:0099402 GO:0140098 GO:0140102 GO:1901360 GO:1905392 GO:1990110

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 WBS_methylT

Protein Analysis

290

Amino Acids

32.04

Weight (kDa)

8.76

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57280
fragaria_vesca	FvH4_4g07620
malus_domestica	MD13G1245300.v1.1 MD16G1253000.v1.1
prunus_persica	Prupe.1G079400_v2.0.a1
pyrus_communis	pycom13g21630
rosa_chinensis	RchiOBHm_Chr4g0400231
rosa_laevigata	RLG00000009202
rosa_multiflora	Rmu_sc0004338.1_g000003
rosa_roxburghii	Rroxscaffold_5G00345190
rosa_rugosa	Rorug04G0024000
rosa_samantha	Rh4AG099000 Rh4BG097300 Rh4CG108500 Rh4DG094000
rosa_wichuraiana	Rw4G008230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	192, 824
AclWI	GGATC	1 cut(s)	439
AcoI	YGGCCR	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	90
AcuI	CTGAAG	1 cut(s)	159
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	3 cut(s)	65, 440, 839
AfiI	CCNNNNNNNGG	2 cut(s)	143, 369
AgsI	TTSAA	3 cut(s)	418, 476, 711
AjnI	CCWGG	1 cut(s)	152
AloI	GAACNNNNNNTCC	2 cut(s)	804, 836
AluBI	AGCT	6 cut(s)	16, 23, 103, 124, 508, 845
AluI	AGCT	6 cut(s)	16, 23, 103, 124, 508, 845
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	439
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	3 cut(s)	8, 611, 728
ApeKI	GCWGC	2 cut(s)	16, 467
ApoI	RAATTY	1 cut(s)	90
Asp700I	GAANNNNTTC	1 cut(s)	422
AspS9I	GGNCC	2 cut(s)	611, 729
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	2 cut(s)	296, 671
AvaI	CYCGRG	1 cut(s)	119
BanII	GRGCYC	2 cut(s)	105, 118
BbsI	GAAGAC	1 cut(s)	699
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	2 cut(s)	3, 479
BccI	CCATC	4 cut(s)	137, 335, 625, 650
BceAI	ACGGC	1 cut(s)	347
BciT130I	CCWGG	1 cut(s)	154
BciVI	GTATCC	1 cut(s)	492
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	494
BfuI	GTATCC	1 cut(s)	492
BisI	GCNGC	2 cut(s)	17, 468
BlpI	GCTNAGC	1 cut(s)	448
BlsI	GCNGC	2 cut(s)	18, 469
Bme1390I	CCNGG	2 cut(s)	154, 244
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	2 cut(s)	611, 729
BmiI	GGNNCC	1 cut(s)	346
BmrFI	CCNGG	2 cut(s)	154, 244
BmsI	GCATC	2 cut(s)	226, 434
BoxI	GACNNNNGTC	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	699
BplI	GAGNNNNNCTC	2 cut(s)	653, 685
BpmI	CTGGAG	1 cut(s)	287
Bpu10I	CCTNAGC	1 cut(s)	316
Bpu1102I	GCTNAGC	1 cut(s)	448
BpuMI	CCSGG	1 cut(s)	244
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	152
BsaXI	ACNNNNNCTCC	2 cut(s)	619, 649
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 369
Bse1I	ACTGG	1 cut(s)	270
Bse3DI	GCAATG	2 cut(s)	385, 531
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	152
BseGI	GGATG	1 cut(s)	629
BseLI	CCNNNNNNNGG	2 cut(s)	143, 369
BseMI	GCAATG	2 cut(s)	385, 531
BseMII	CTCAG	3 cut(s)	21, 372, 729
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	2 cut(s)	65, 152
BseXI	GCAGC	2 cut(s)	3, 479
BseYI	CCCAGC	1 cut(s)	542
BshFI	GGCC	3 cut(s)	10, 613, 730
BsiHKAI	GWGCWC	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	244
BslFI	GGGAC	2 cut(s)	134, 314
BslI	CCNNNNNNNGG	2 cut(s)	143, 369
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	2 cut(s)	134, 314
BsnI	GGCC	3 cut(s)	10, 613, 730
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	105, 118
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	2 cut(s)	294, 431
Bsp1720I	GCTNAGC	1 cut(s)	448
BspACI	CCGC	2 cut(s)	192, 824
BspANI	GGCC	3 cut(s)	10, 613, 730
BspCNI	CTCAG	3 cut(s)	22, 371, 728
BspLI	GGNNCC	1 cut(s)	346
BspPI	GGATC	1 cut(s)	439
BsrDI	GCAATG	2 cut(s)	385, 531
BsrGI	TGTACA	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	152
BssMI	GATC	2 cut(s)	294, 431
BssNI	GRCGYC	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	2 cut(s)	572, 706
Bst6I	CTCTTC	2 cut(s)	42, 763
BstACI	GRCGYC	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	530
BstAUI	TGTACA	1 cut(s)	438
BstC8I	GCNNGC	3 cut(s)	21, 58, 531
BstDEI	CTNAG	6 cut(s)	30, 188, 316, 358, 448, 715
BstEII	GGTNACC	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	629
BstKTI	GATC	2 cut(s)	297, 434
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	294, 431
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 458, 467, 530, 539
BstNI	CCWGG	1 cut(s)	154
BstPAI	GACNNNNGTC	1 cut(s)	306
BstPI	GGTNACC	1 cut(s)	284
BstSCI	CCNGG	2 cut(s)	152, 242
BstV1I	GCAGC	2 cut(s)	3, 479
BstV2I	GAAGAC	1 cut(s)	699
BsuI	GTATCC	1 cut(s)	492
BsuRI	GGCC	3 cut(s)	10, 613, 730
BtsCI	GGATG	1 cut(s)	629
BtsIMutI	CAGTG	3 cut(s)	227, 263, 374
Cac8I	GCNNGC	3 cut(s)	21, 58, 531
Cfr13I	GGNCC	2 cut(s)	611, 729
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	3 cut(s)	64, 439, 838
CviAII	CATG	2 cut(s)	85, 304
CviQI	GTAC	3 cut(s)	64, 439, 838
DdeI	CTNAG	6 cut(s)	30, 188, 316, 358, 448, 715
DpnI	GATC	2 cut(s)	296, 433
DpnII	GATC	2 cut(s)	294, 431
EaeI	YGGCCR	1 cut(s)	8
Eam1104I	CTCTTC	2 cut(s)	42, 763
EarI	CTCTTC	2 cut(s)	42, 763
EciI	GGCGGA	1 cut(s)	813
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	2 cut(s)	105, 118
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	159
Eco88I	CYCGRG	1 cut(s)	119
Eco91I	GGTNACC	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	152
EcoT38I	GRGCYC	2 cut(s)	105, 118
FaeI	CATG	2 cut(s)	88, 307
FaiI	YATR	4 cut(s)	86, 305, 350, 399
FalI	AAGNNNNNCTT	4 cut(s)	410, 442, 579, 611
FaqI	GGGAC	2 cut(s)	134, 314
FatI	CATG	2 cut(s)	84, 303
Fnu4HI	GCNGC	2 cut(s)	17, 468
FokI	GGATG	1 cut(s)	616
FriOI	GRGCYC	2 cut(s)	105, 118
Fsp4HI	GCNGC	2 cut(s)	17, 468
FspBI	CTAG	1 cut(s)	494
GluI	GCNGC	2 cut(s)	17, 468
GsaI	CCCAGC	1 cut(s)	546
GsuI	CTGGAG	1 cut(s)	287
HaeIII	GGCC	3 cut(s)	10, 613, 730
HapII	CCGG	1 cut(s)	244
HgaI	GACGC	1 cut(s)	136
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	88, 307
HinfI	GANTC	1 cut(s)	81
HpaII	CCGG	1 cut(s)	244
HphI	GGTGA	2 cut(s)	296, 671
Hpy166II	GTNNAC	2 cut(s)	66, 840
Hpy188I	TCNGA	6 cut(s)	100, 208, 673, 702, 718, 849
Hpy188III	TCNNGA	4 cut(s)	78, 330, 485, 494
Hpy8I	GTNNAC	2 cut(s)	66, 840
HpyAV	CCTTC	2 cut(s)	412, 784
HpyCH4III	ACNGT	2 cut(s)	572, 706
HpyCH4IV	ACGT	1 cut(s)	853
HpyCH4V	TGCA	4 cut(s)	19, 263, 378, 524
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 458, 467, 530, 539
HpyF3I	CTNAG	6 cut(s)	30, 188, 316, 358, 448, 715
HpySE526I	ACGT	1 cut(s)	853
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	88, 307
Kzo9I	GATC	2 cut(s)	294, 431
LmnI	GCTCC	4 cut(s)	28, 165, 344, 458
Lsp1109I	GCAGC	2 cut(s)	3, 479
LweI	GCATC	2 cut(s)	226, 434
MaeI	CTAG	1 cut(s)	494
MaeII	ACGT	1 cut(s)	853
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	2 cut(s)	296, 433
MboI	GATC	2 cut(s)	294, 431
MboII	GAAGA	8 cut(s)	59, 152, 665, 698, 704, 766, 780, 799
MhlI	GDGCHC	2 cut(s)	105, 118
MluCI	AATT	2 cut(s)	73, 90
MroXI	GAANNNNTTC	1 cut(s)	422
MspI	CCGG	1 cut(s)	244
MspR9I	CCNGG	2 cut(s)	154, 244
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	5 cut(s)	16, 458, 467, 530, 539
NciI	CCSGG	1 cut(s)	244
NdeII	GATC	2 cut(s)	294, 431
NlaIII	CATG	2 cut(s)	88, 307
NlaIV	GGNNCC	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	284
PaeR7I	CTCGAG	1 cut(s)	119
PcsI	WCGNNNNNNNCGW	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	422
PfeI	GAWTC	1 cut(s)	81
PkrI	GCNGC	2 cut(s)	18, 469
PshAI	GACNNNNGTC	1 cut(s)	306
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	152
PspEI	GGTNACC	1 cut(s)	284
PspFI	CCCAGC	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	346
PspPI	GGNCC	2 cut(s)	611, 729
PspXI	VCTCGAGB	1 cut(s)	119
RsaI	GTAC	3 cut(s)	65, 440, 839
RsaNI	GTAC	3 cut(s)	64, 439, 838
SacI	GAGCTC	1 cut(s)	105
SatI	GCNGC	2 cut(s)	17, 468
Sau3AI	GATC	2 cut(s)	294, 431
Sau96I	GGNCC	2 cut(s)	611, 729
ScrFI	CCNGG	2 cut(s)	154, 244
SduI	GDGCHC	2 cut(s)	105, 118
SfaNI	GCATC	2 cut(s)	226, 434
Sfr274I	CTCGAG	1 cut(s)	119
SlaI	CTCGAG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	2 cut(s)	73, 90
SsiI	CCGC	2 cut(s)	192, 824
SspMI	CTAG	1 cut(s)	494
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	152, 242
TaaI	ACNGT	2 cut(s)	572, 706
TaiI	ACGT	1 cut(s)	856
TaqI	TCGA	3 cut(s)	79, 120, 165
TasI	AATT	2 cut(s)	73, 90
TatI	WGTACW	3 cut(s)	63, 438, 837
TfiI	GAWTC	1 cut(s)	81
TscAI	CASTG	3 cut(s)	227, 270, 374
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	2 cut(s)	16, 467
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	2 cut(s)	60, 705
TspRI	CASTG	3 cut(s)	227, 270, 374
XapI	RAATTY	1 cut(s)	90
XbaI	TCTAGA	1 cut(s)	493
XhoI	CTCGAG	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	422
XspI	CTAG	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.