AT5G57345

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016000
Physical Location & Seq
Reverse (-)
23229291 .. 23230749
1459 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G57345.1

Sequence Viewer

Length: 567 bp
ATGTATTTCGCCGCCATAGCTTCTTCACGACAAAGCTTTTTGTCAAACAATTTCAGTTTCCAACACAGTTTTAAACCCAAATCCAATGTTAACCTCACTCGTCCTAATTCAATCTGTTGTAAATCTTCACACCACGACGACGAAACTGATTCTTCTCGGAAAAATGAAAATCAGCTGGCGAAGTTGGCAATCGCGACGCTAGCGGTTGGCGTTTTGGCTTTGGGAAGTGTTGGGGATGCGTTTGCGGCCAAAAGCGGTGGAAGAATCGGCGGTCAAGCGTTTCGGTCTTCAGCTCCTCGTCCTCCTCCCAGAATTAACAATCGATCAAGGACCAACATCTACGTGAATCCTCAGGTTGCACCACCTTTGATCGGTGGCTATGGATATGGTTACGGAGGTTACGGATGGTCACCGTTTTCCTTTTTTGCCCCTGGTCCTGCGGTGGCAGTAGGTGTTGGCGGTGGCTTTGACCTCCTACTTCTCTTCATGTTTTTTGGAGCCGCTTCAGCCGTCGCTAGAAACTTTTTCCGATCAAGAAATGATGAAGATGACGAAGACGACTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

188

Amino Acids

20.19

Weight (kDa)

9.2

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016000)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57345
fragaria_vesca FvH4_4g07780
malus_domestica MD13G1247100.v1.1
pyrus_communis pycom13g21800
rosa_chinensis RchiOBHm_Chr4g0400871
rosa_laevigata RLG00000009171
rosa_multiflora Rmu_sc0004401.1_g000016 Rmu_sc0018346.1_g000005
rosa_roxburghii Rroxscaffold_5G00345750
rosa_rugosa Rorug04G0026500
rosa_samantha Rh4AG104500 Rh4BG099700 Rh4CG112900 Rh4DG096600
rosa_wichuraiana Rw4G008460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 194
AciI CCGC 8 cut(s) 12, 203, 245, 255, 270, 440, 459, 501
AcoI YGGCCR 1 cut(s) 246
AcuI CTGAAG 2 cut(s) 273, 489
AfiI CCNNNNNNNGG 1 cut(s) 371
AgsI TTSAA 1 cut(s) 111
AjnI CCWGG 1 cut(s) 430
AluBI AGCT 4 cut(s) 20, 36, 175, 293
AluI AGCT 4 cut(s) 20, 36, 175, 293
AoxI GGCC 1 cut(s) 246
AspS9I GGNCC 2 cut(s) 330, 434
AsuHPI GGTGA 1 cut(s) 402
AsuNHI GCTAGC 1 cut(s) 199
AvaII GGWCC 2 cut(s) 330, 434
AxyI CCTNAGG 1 cut(s) 351
BbsI GAAGAC 2 cut(s) 279, 561
BccI CCATC 1 cut(s) 399
BceAI ACGGC 1 cut(s) 494
BciT130I CCWGG 1 cut(s) 432
BfaI CTAG 2 cut(s) 200, 516
BisI GCNGC 3 cut(s) 12, 246, 501
BlsI GCNGC 3 cut(s) 13, 247, 502
Bme1390I CCNGG 1 cut(s) 432
Bme18I GGWCC 2 cut(s) 330, 434
BmgT120I GGNCC 2 cut(s) 330, 434
BmiI GGNNCC 1 cut(s) 499
BmrFI CCNGG 1 cut(s) 432
BmsI GCATC 1 cut(s) 226
BmtI GCTAGC 1 cut(s) 203
BpiI GAAGAC 2 cut(s) 279, 561
Bsa29I ATCGAT 1 cut(s) 322
BsaAI YACGTR 1 cut(s) 343
BsaJI CCNNGG 1 cut(s) 430
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse21I CCTNAGG 1 cut(s) 351
BseBI CCWGG 1 cut(s) 432
BseCI ATCGAT 1 cut(s) 322
BseDI CCNNGG 1 cut(s) 430
BseGI GGATG 2 cut(s) 241, 410
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMII CTCAG 1 cut(s) 365
BseRI GAGGAG 2 cut(s) 285, 294
Bsh1236I CGCG 1 cut(s) 194
BshFI GGCC 1 cut(s) 248
BshVI ATCGAT 1 cut(s) 322
BslI CCNNNNNNNGG 1 cut(s) 371
BsnI GGCC 1 cut(s) 248
Bsp143I GATC 3 cut(s) 323, 369, 530
Bsp68I TCGCGA 1 cut(s) 194
BspACI CCGC 8 cut(s) 12, 203, 245, 255, 270, 440, 459, 501
BspANI GGCC 1 cut(s) 248
BspCNI CTCAG 1 cut(s) 364
BspDI ATCGAT 1 cut(s) 322
BspFNI CGCG 1 cut(s) 194
BspLI GGNNCC 1 cut(s) 499
BspOI GCTAGC 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 430
BssMI GATC 3 cut(s) 323, 369, 530
Bst2UI CCWGG 1 cut(s) 432
Bst4CI ACNGT 2 cut(s) 68, 414
Bst6I CTCTTC 1 cut(s) 488
BstBAI YACGTR 1 cut(s) 343
BstC8I GCNNGC 2 cut(s) 177, 201
BstDEI CTNAG 1 cut(s) 351
BstEII GGTNACC 1 cut(s) 408
BstF5I GGATG 2 cut(s) 241, 410
BstFNI CGCG 1 cut(s) 194
BstKTI GATC 3 cut(s) 326, 372, 533
BstMBI GATC 3 cut(s) 323, 369, 530
BstMWI GCNNNNNNNGC 5 cut(s) 17, 185, 200, 245, 506
BstNI CCWGG 1 cut(s) 432
BstPI GGTNACC 1 cut(s) 408
BstSCI CCNGG 1 cut(s) 430
BstUI CGCG 1 cut(s) 194
BstV2I GAAGAC 2 cut(s) 279, 561
Bsu15I ATCGAT 1 cut(s) 322
Bsu36I CCTNAGG 1 cut(s) 351
BsuRI GGCC 1 cut(s) 248
BsuTUI ATCGAT 1 cut(s) 322
BtsCI GGATG 2 cut(s) 241, 410
BtuMI TCGCGA 1 cut(s) 194
Cac8I GCNNGC 2 cut(s) 177, 201
Cfr13I GGNCC 2 cut(s) 330, 434
ClaI ATCGAT 1 cut(s) 322
CseI GACGC 1 cut(s) 205
CspCI CAANNNNNGTGG 2 cut(s) 238, 273
CviAII CATG 1 cut(s) 487
DdeI CTNAG 1 cut(s) 351
DpnI GATC 3 cut(s) 325, 371, 532
DpnII GATC 3 cut(s) 323, 369, 530
DraI TTTAAA 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 246
Eam1104I CTCTTC 1 cut(s) 488
EarI CTCTTC 1 cut(s) 488
Eco47I GGWCC 2 cut(s) 330, 434
Eco57I CTGAAG 2 cut(s) 273, 489
Eco81I CCTNAGG 1 cut(s) 351
Eco91I GGTNACC 1 cut(s) 408
EcoO65I GGTNACC 1 cut(s) 408
EcoRII CCWGG 1 cut(s) 430
FaeI CATG 1 cut(s) 490
FaiI YATR 4 cut(s) 17, 381, 387, 488
FatI CATG 1 cut(s) 486
Fnu4HI GCNGC 3 cut(s) 12, 246, 501
FokI GGATG 2 cut(s) 248, 417
Fsp4HI GCNGC 3 cut(s) 12, 246, 501
FspBI CTAG 2 cut(s) 200, 516
GluI GCNGC 3 cut(s) 12, 246, 501
HaeIII GGCC 1 cut(s) 248
HgaI GACGC 1 cut(s) 205
Hin1II CATG 1 cut(s) 490
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 34
HinfI GANTC 3 cut(s) 149, 264, 346
HpaI GTTAAC 1 cut(s) 91
HphI GGTGA 1 cut(s) 402
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 2 cut(s) 159, 530
Hpy188III TCNNGA 3 cut(s) 27, 193, 534
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 4 cut(s) 140, 143, 199, 515
HpyCH4III ACNGT 2 cut(s) 68, 414
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 1 cut(s) 359
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 185, 200, 245, 506
HpyF3I CTNAG 1 cut(s) 351
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 1 cut(s) 490
KspAI GTTAAC 1 cut(s) 91
Kzo9I GATC 3 cut(s) 323, 369, 530
LmnI GCTCC 2 cut(s) 298, 497
LpnPI CCDG 6 cut(s) 161, 322, 338, 417, 444, 450
LweI GCATC 1 cut(s) 226
MaeI CTAG 2 cut(s) 200, 516
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 3 cut(s) 389, 398, 408
MalI GATC 3 cut(s) 325, 371, 532
MboI GATC 3 cut(s) 323, 369, 530
MboII GAAGA 8 cut(s) 15, 117, 144, 273, 279, 475, 557, 566
MluCI AATT 3 cut(s) 49, 106, 312
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 7 cut(s) 104, 306, 312, 315, 360, 389, 482
MseI TTAA 3 cut(s) 72, 90, 315
MslI CAYNNNNRTG 1 cut(s) 341
MspA1I CMGCKG 1 cut(s) 175
MspR9I CCNGG 1 cut(s) 432
MvaI CCWGG 1 cut(s) 432
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 5 cut(s) 17, 185, 200, 245, 506
NdeII GATC 3 cut(s) 323, 369, 530
NheI GCTAGC 1 cut(s) 199
NlaIII CATG 1 cut(s) 490
NlaIV GGNNCC 1 cut(s) 499
NmuCI GTSAC 1 cut(s) 408
NruI TCGCGA 1 cut(s) 194
PfeI GAWTC 3 cut(s) 149, 264, 346
PkrI GCNGC 3 cut(s) 13, 247, 502
Ppu21I YACGTR 1 cut(s) 343
Psp6I CCWGG 1 cut(s) 430
PspEI GGTNACC 1 cut(s) 408
PspGI CCWGG 1 cut(s) 430
PspN4I GGNNCC 1 cut(s) 499
PspPI GGNCC 2 cut(s) 330, 434
PvuII CAGCTG 1 cut(s) 175
RruI TCGCGA 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 341
SaqAI TTAA 3 cut(s) 72, 90, 315
SatI GCNGC 3 cut(s) 12, 246, 501
Sau3AI GATC 3 cut(s) 323, 369, 530
Sau96I GGNCC 2 cut(s) 330, 434
ScrFI CCNGG 1 cut(s) 432
SfaNI GCATC 1 cut(s) 226
SinI GGWCC 2 cut(s) 330, 434
SmiMI CAYNNNNRTG 1 cut(s) 341
Sse9I AATT 3 cut(s) 49, 106, 312
SsiI CCGC 8 cut(s) 12, 203, 245, 255, 270, 440, 459, 501
SspMI CTAG 2 cut(s) 200, 516
StyD4I CCNGG 1 cut(s) 430
TaaI ACNGT 2 cut(s) 68, 414
TaiI ACGT 1 cut(s) 345
TaqI TCGA 1 cut(s) 322
TaqII GACCGA 1 cut(s) 273
TasI AATT 3 cut(s) 49, 106, 312
TauI GCSGC 3 cut(s) 14, 248, 503
TfiI GAWTC 3 cut(s) 149, 264, 346
Tru1I TTAA 3 cut(s) 72, 90, 315
Tru9I TTAA 3 cut(s) 72, 90, 315
TseFI GTSAC 1 cut(s) 408
Tsp45I GTSAC 1 cut(s) 408
TspDTI ATGAA 3 cut(s) 180, 475, 558
TspGWI ACGGA 2 cut(s) 408, 417
VpaK11BI GGWCC 2 cut(s) 330, 434
XspI CTAG 2 cut(s) 200, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.