FvH4_4g07780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016000
Physical Location & Seq
Reverse (-)
7284434 .. 7288534
4101 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g07780.t1

Sequence Viewer

Length: 576 bp
ATGTCTGTGGCCTCATCCCAACAGAGCTTTCTAGCAAACGCTCTTATTCCACAGACCCACAAACCCAAAACCAAGTTCTTTACTTCACCAAACACTATCTCATGCAAAAGAATCTCCTCATCAGATGATGATCATCAGAAAGGCCTTTCCAGAAAGAATGAGAACCAATTTGCAAAGTTGGCAATGGTGACATTGGCAGCTGGTGTGTTGACTCTGGGCACTGTTGATGATGCTTCAGCTGCCAAGAGTGGCGGTAGAGTTGGTGGCCAGGCGTTCCGGTCTTCGGTTCCTCGGTCTTCCTCCCCTAGGATCAATAACAATTCCAGGACCAATATATACATCAATCCTCCTGTTGCTCCGCCATTAGTAGGTGGTTATGGGTATGGTTATGGATCACCATTCTTTGGTGGCTGGGGTTGGTCACCATTTTCATTTTTCACCCCAGGTCCTAGTGTTGCCATTGGCATTGGTGGCGGCTTCCAACTGTTAGCTATTGCTGTGTTTCTTGGTGCCATTGCTGCCGTAGCAAGGAGATTCAACGCTTCAAGAGATGAAGAAGATGATGATTACTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

192

Amino Acids

20.23

Weight (kDa)

9.63

Isoelectric Point (pI)

55.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016000)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57345
fragaria_vesca FvH4_4g07780
malus_domestica MD13G1247100.v1.1
pyrus_communis pycom13g21800
rosa_chinensis RchiOBHm_Chr4g0400871
rosa_laevigata RLG00000009171
rosa_multiflora Rmu_sc0004401.1_g000016 Rmu_sc0018346.1_g000005
rosa_roxburghii Rroxscaffold_5G00345750
rosa_rugosa Rorug04G0026500
rosa_samantha Rh4AG104500 Rh4BG099700 Rh4CG112900 Rh4DG096600
rosa_wichuraiana Rw4G008460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 509
AccB7I CCANNNNNTGG 1 cut(s) 404
AciI CCGC 3 cut(s) 252, 359, 474
AclWI GGATC 2 cut(s) 317, 400
AcoI YGGCCR 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 219
AfiI CCNNNNNNNGG 5 cut(s) 283, 306, 368, 404, 528
AgsI TTSAA 2 cut(s) 538, 546
AjnI CCWGG 3 cut(s) 267, 323, 442
AjuI GAANNNNNNNTTGG 4 cut(s) 12, 44, 59, 91
AluBI AGCT 4 cut(s) 27, 200, 239, 491
AluI AGCT 4 cut(s) 27, 200, 239, 491
AlwI GGATC 2 cut(s) 317, 400
AoxI GGCC 3 cut(s) 9, 142, 265
ApeKI GCWGC 3 cut(s) 197, 239, 518
AspA2I CCTAGG 1 cut(s) 305
AspS9I GGNCC 2 cut(s) 327, 446
AsuHPI GGTGA 5 cut(s) 78, 199, 387, 414, 430
AvaII GGWCC 2 cut(s) 327, 446
AvrII CCTAGG 1 cut(s) 305
BaeGI GKGCMC 1 cut(s) 221
BalI TGGCCA 1 cut(s) 267
BanI GGYRCC 1 cut(s) 509
BbsI GAAGAC 2 cut(s) 273, 288
BbvI GCAGC 3 cut(s) 209, 226, 505
BceAI ACGGC 1 cut(s) 506
BciT130I CCWGG 3 cut(s) 269, 325, 444
BclI TGATCA 1 cut(s) 130
BfaI CTAG 3 cut(s) 32, 306, 450
BisI GCNGC 4 cut(s) 198, 240, 475, 519
BlnI CCTAGG 1 cut(s) 305
BlsI GCNGC 4 cut(s) 199, 241, 476, 520
Bme1390I CCNGG 3 cut(s) 269, 325, 444
Bme18I GGWCC 2 cut(s) 327, 446
BmgT120I GGNCC 2 cut(s) 327, 446
BmiI GGNNCC 2 cut(s) 288, 511
BmrFI CCNGG 3 cut(s) 269, 325, 444
BmsI GCATC 1 cut(s) 220
BpiI GAAGAC 2 cut(s) 273, 288
BsaBI GATNNNNATC 2 cut(s) 129, 132
BsaJI CCNNGG 3 cut(s) 290, 305, 442
BsaWI WCCGGW 1 cut(s) 276
Bsc4I CCNNNNNNNGG 5 cut(s) 283, 306, 368, 404, 528
Bse3DI GCAATG 2 cut(s) 189, 513
Bse8I GATNNNNATC 2 cut(s) 129, 132
BseBI CCWGG 3 cut(s) 269, 325, 444
BseDI CCNNGG 3 cut(s) 290, 305, 442
BseGI GGATG 1 cut(s) 14
BseJI GATNNNNATC 2 cut(s) 129, 132
BseLI CCNNNNNNNGG 5 cut(s) 283, 306, 368, 404, 528
BseMI GCAATG 2 cut(s) 189, 513
BseRI GAGGAG 1 cut(s) 106
BseSI GKGCMC 1 cut(s) 221
BseXI GCAGC 3 cut(s) 209, 226, 505
BseYI CCCAGC 1 cut(s) 411
BshFI GGCC 3 cut(s) 11, 144, 267
BshNI GGYRCC 1 cut(s) 509
BsiSI CCGG 1 cut(s) 277
BslI CCNNNNNNNGG 5 cut(s) 283, 306, 368, 404, 528
BsnI GGCC 3 cut(s) 11, 144, 267
Bsp1286I GDGCHC 1 cut(s) 221
Bsp143I GATC 3 cut(s) 130, 309, 392
BspACI CCGC 3 cut(s) 252, 359, 474
BspANI GGCC 3 cut(s) 11, 144, 267
BspLI GGNNCC 2 cut(s) 288, 511
BspPI GGATC 2 cut(s) 317, 400
BspT107I GGYRCC 1 cut(s) 509
BsrDI GCAATG 2 cut(s) 189, 513
BssECI CCNNGG 3 cut(s) 290, 305, 442
BssMI GATC 3 cut(s) 130, 309, 392
BssT1I CCWWGG 1 cut(s) 305
Bst2UI CCWGG 3 cut(s) 269, 325, 444
Bst4CI ACNGT 2 cut(s) 223, 486
BstEII GGTNACC 1 cut(s) 420
BstENI CCTNNNNNAGG 1 cut(s) 304
BstF5I GGATG 1 cut(s) 14
BstKTI GATC 3 cut(s) 133, 312, 395
BstMBI GATC 3 cut(s) 130, 309, 392
BstMWI GCNNNNNNNGC 5 cut(s) 179, 239, 471, 518, 524
BstNI CCWGG 3 cut(s) 269, 325, 444
BstPI GGTNACC 1 cut(s) 420
BstSCI CCNGG 3 cut(s) 267, 323, 442
BstSLI GKGCMC 1 cut(s) 221
BstV1I GCAGC 3 cut(s) 209, 226, 505
BstV2I GAAGAC 2 cut(s) 273, 288
BsuRI GGCC 3 cut(s) 11, 144, 267
BtsCI GGATG 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 219
Cfr13I GGNCC 2 cut(s) 327, 446
CviAII CATG 1 cut(s) 102
CviJI RGCY 9 cut(s) 11, 27, 144, 200, 239, 267, 411, 477, 491
CviKI_1 RGCY 9 cut(s) 11, 27, 144, 200, 239, 267, 411, 477, 491
DpnI GATC 3 cut(s) 132, 311, 394
DpnII GATC 3 cut(s) 130, 309, 392
EaeI YGGCCR 1 cut(s) 265
EciI GGCGGA 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 305
Eco147I AGGCCT 1 cut(s) 144
Eco47I GGWCC 2 cut(s) 327, 446
Eco57I CTGAAG 1 cut(s) 219
Eco91I GGTNACC 1 cut(s) 420
EcoNI CCTNNNNNAGG 1 cut(s) 304
EcoO109I RGGNCCY 1 cut(s) 446
EcoO65I GGTNACC 1 cut(s) 420
EcoRII CCWGG 3 cut(s) 267, 323, 442
EcoT14I CCWWGG 1 cut(s) 305
ErhI CCWWGG 1 cut(s) 305
FaeI CATG 1 cut(s) 105
FaiI YATR 6 cut(s) 103, 335, 337, 378, 384, 390
FatI CATG 1 cut(s) 101
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 4 cut(s) 198, 240, 475, 519
Fsp4HI GCNGC 4 cut(s) 198, 240, 475, 519
FspBI CTAG 3 cut(s) 32, 306, 450
GluI GCNGC 4 cut(s) 198, 240, 475, 519
GsaI CCCAGC 1 cut(s) 415
HaeIII GGCC 3 cut(s) 11, 144, 267
HapII CCGG 1 cut(s) 277
Hin1II CATG 1 cut(s) 105
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HinfI GANTC 3 cut(s) 111, 211, 534
HpaII CCGG 1 cut(s) 277
HphI GGTGA 5 cut(s) 78, 199, 387, 414, 430
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 2 cut(s) 124, 138
Hpy188III TCNNGA 2 cut(s) 150, 546
Hpy8I GTNNAC 1 cut(s) 210
HpyCH4III ACNGT 2 cut(s) 223, 486
HpyCH4V TGCA 2 cut(s) 105, 173
HpyF10VI GCNNNNNNNGC 5 cut(s) 179, 239, 471, 518, 524
Hsp92II CATG 1 cut(s) 105
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 3 cut(s) 130, 309, 392
LmnI GCTCC 1 cut(s) 361
Lsp1109I GCAGC 3 cut(s) 209, 226, 505
LweI GCATC 1 cut(s) 220
MaeI CTAG 3 cut(s) 32, 306, 450
MaeIII GTNAC 2 cut(s) 187, 420
MalI GATC 3 cut(s) 132, 311, 394
MboI GATC 3 cut(s) 130, 309, 392
MboII GAAGA 4 cut(s) 273, 288, 566, 569
MhlI GDGCHC 1 cut(s) 221
MlsI TGGCCA 1 cut(s) 267
MluCI AATT 2 cut(s) 167, 319
MluNI TGGCCA 1 cut(s) 267
MlyI GAGTC 1 cut(s) 205
MmeI TCCRAC 1 cut(s) 505
MnlI CCTC 5 cut(s) 22, 127, 300, 310, 357
Mox20I TGGCCA 1 cut(s) 267
MscI TGGCCA 1 cut(s) 267
MseI TTAA 1 cut(s) 574
Msp20I TGGCCA 1 cut(s) 267
MspA1I CMGCKG 2 cut(s) 200, 239
MspI CCGG 1 cut(s) 277
MspR9I CCNGG 3 cut(s) 269, 325, 444
MvaI CCWGG 3 cut(s) 269, 325, 444
MwoI GCNNNNNNNGC 5 cut(s) 179, 239, 471, 518, 524
NdeII GATC 3 cut(s) 130, 309, 392
NlaIII CATG 1 cut(s) 105
NlaIV GGNNCC 2 cut(s) 288, 511
NmuCI GTSAC 2 cut(s) 187, 420
PceI AGGCCT 1 cut(s) 144
PfeI GAWTC 2 cut(s) 111, 534
PflMI CCANNNNNTGG 1 cut(s) 404
PfoI TCCNGGA 1 cut(s) 323
PkrI GCNGC 4 cut(s) 199, 241, 476, 520
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PpuMI RGGWCCY 1 cut(s) 446
Psp5II RGGWCCY 1 cut(s) 446
Psp6I CCWGG 3 cut(s) 267, 323, 442
PspEI GGTNACC 1 cut(s) 420
PspFI CCCAGC 1 cut(s) 411
PspGI CCWGG 3 cut(s) 267, 323, 442
PspN4I GGNNCC 2 cut(s) 288, 511
PspPI GGNCC 2 cut(s) 327, 446
PspPPI RGGWCCY 1 cut(s) 446
PvuII CAGCTG 2 cut(s) 200, 239
SaqAI TTAA 1 cut(s) 574
SatI GCNGC 4 cut(s) 198, 240, 475, 519
Sau3AI GATC 3 cut(s) 130, 309, 392
Sau96I GGNCC 2 cut(s) 327, 446
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 3 cut(s) 269, 325, 444
SduI GDGCHC 1 cut(s) 221
SetI ASST 6 cut(s) 29, 202, 241, 373, 448, 493
SfaNI GCATC 1 cut(s) 220
SinI GGWCC 2 cut(s) 327, 446
Sse9I AATT 2 cut(s) 167, 319
SseBI AGGCCT 1 cut(s) 144
SsiI CCGC 3 cut(s) 252, 359, 474
SspMI CTAG 3 cut(s) 32, 306, 450
StuI AGGCCT 1 cut(s) 144
StyD4I CCNGG 3 cut(s) 267, 323, 442
StyI CCWWGG 1 cut(s) 305
TaaI ACNGT 2 cut(s) 223, 486
TaqII GACCGA 1 cut(s) 282
TasI AATT 2 cut(s) 167, 319
TauI GCSGC 1 cut(s) 477
TfiI GAWTC 2 cut(s) 111, 534
Tru1I TTAA 1 cut(s) 574
Tru9I TTAA 1 cut(s) 574
TscAI CASTG 1 cut(s) 226
TseFI GTSAC 2 cut(s) 187, 420
TseI GCWGC 3 cut(s) 197, 239, 518
Tsp45I GTSAC 2 cut(s) 187, 420
TspDTI ATGAA 2 cut(s) 420, 567
TspRI CASTG 1 cut(s) 226
Van91I CCANNNNNTGG 1 cut(s) 404
VpaK11BI GGWCC 2 cut(s) 327, 446
XagI CCTNNNNNAGG 1 cut(s) 304
XmaJI CCTAGG 1 cut(s) 305
XspI CTAG 3 cut(s) 32, 306, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.