RchiOBHm_Chr4g0400871

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0016000
Physical Location & Seq
Reverse (-)
18756420 .. 18760077
3658 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37286

Sequence Viewer

Length: 591 bp
ATGTCTGTGGCCTCATCCCAACAGAGCTTTCTTGCAAACGCTCTCATTCCACAAACCCACAAACCCAAAACCAAGTTCTTCACTTCACCATACACTATCTCATGCAAAAGAAGCTCCTCATCAGATGATGATCATCAGAAAGGTCTTTCCAGTAATGAAATTCCCAGAAAGAATGAGAACCAATTTGCAAAGTTGGCAATGGTGACATTGGCAGCTGGTGTGTTGACTCTGGGCTCTGTTCAAGATGCTTCAGCTGCCAAGAGTGGTGGCAGAGTAGGTGGACAGGCGTTCCGGTCTTCGGCTCCTCGGCCTTCCTCCCCTAGGATCAATAACAATTCCAGGACCAATATTTACATCAATCCTCCTGTTGCTCCGCCATTAGTCGGTGGTTATGGATATGGTTATGGATCACCATTCTTTGGTGGGTGGGGTTGGTCTCCATTTTCATTTTTCGCCCCAGGTCCTGGTGTTGTCGTTGGCATTGGTGGCGGCTTCCAACTGTTAGCTATTGCTGTGTTTCTTGGTGCAATTGCTGCCGTGGCAAGGAGATTCAACGCTTCAAGAGACGAAGAAGATGATGATTACTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

196

Amino Acids

20.73

Weight (kDa)

9.59

Isoelectric Point (pI)

58.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016000)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57345
fragaria_vesca FvH4_4g07780
malus_domestica MD13G1247100.v1.1
pyrus_communis pycom13g21800
rosa_chinensis RchiOBHm_Chr4g0400871
rosa_laevigata RLG00000009171
rosa_multiflora Rmu_sc0004401.1_g000016 Rmu_sc0018346.1_g000005
rosa_roxburghii Rroxscaffold_5G00345750
rosa_rugosa Rorug04G0026500
rosa_samantha Rh4AG104500 Rh4BG099700 Rh4CG112900 Rh4DG096600
rosa_wichuraiana Rw4G008460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 419, 464
AciI CCGC 2 cut(s) 374, 489
AclWI GGATC 2 cut(s) 332, 415
AcsI RAATTY 1 cut(s) 159
AcuI CTGAAG 1 cut(s) 234
AfiI CCNNNNNNNGG 6 cut(s) 298, 321, 383, 419, 464, 543
AgsI TTSAA 3 cut(s) 242, 553, 561
AjnI CCWGG 3 cut(s) 338, 457, 463
AjuI GAANNNNNNNTTGG 4 cut(s) 12, 44, 59, 91
AluBI AGCT 5 cut(s) 27, 114, 215, 254, 506
AluI AGCT 5 cut(s) 27, 114, 215, 254, 506
Alw26I GTCTC 2 cut(s) 441, 558
AlwI GGATC 2 cut(s) 332, 415
AlwNI CAGNNNCTG 1 cut(s) 464
AoxI GGCC 2 cut(s) 9, 308
ApeKI GCWGC 3 cut(s) 212, 254, 533
ApoI RAATTY 1 cut(s) 159
AspA2I CCTAGG 1 cut(s) 320
AspS9I GGNCC 2 cut(s) 342, 461
AsuHPI GGTGA 3 cut(s) 78, 214, 402
AvaII GGWCC 2 cut(s) 342, 461
AvrII CCTAGG 1 cut(s) 320
BanII GRGCYC 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 288
BbvI GCAGC 3 cut(s) 224, 241, 520
BceAI ACGGC 1 cut(s) 521
BciT130I CCWGG 3 cut(s) 340, 459, 465
BclI TGATCA 1 cut(s) 130
BcoDI GTCTC 2 cut(s) 441, 558
BfaI CTAG 1 cut(s) 321
BisI GCNGC 4 cut(s) 213, 255, 490, 534
BlnI CCTAGG 1 cut(s) 320
BlsI GCNGC 4 cut(s) 214, 256, 491, 535
Bme1390I CCNGG 3 cut(s) 340, 459, 465
Bme18I GGWCC 2 cut(s) 342, 461
BmgT120I GGNCC 2 cut(s) 342, 461
BmiI GGNNCC 1 cut(s) 303
BmrFI CCNGG 3 cut(s) 340, 459, 465
BmsI GCATC 1 cut(s) 235
BpiI GAAGAC 1 cut(s) 288
BsaBI GATNNNNATC 2 cut(s) 129, 132
BsaI GGTCTC 1 cut(s) 441
BsaJI CCNNGG 4 cut(s) 305, 320, 457, 537
BsaWI WCCGGW 1 cut(s) 291
Bsc4I CCNNNNNNNGG 6 cut(s) 298, 321, 383, 419, 464, 543
Bse1I ACTGG 1 cut(s) 150
Bse3DI GCAATG 1 cut(s) 204
Bse8I GATNNNNATC 2 cut(s) 129, 132
BseBI CCWGG 3 cut(s) 340, 459, 465
BseDI CCNNGG 4 cut(s) 305, 320, 457, 537
BseGI GGATG 1 cut(s) 14
BseJI GATNNNNATC 2 cut(s) 129, 132
BseLI CCNNNNNNNGG 6 cut(s) 298, 321, 383, 419, 464, 543
BseMI GCAATG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 150
BseRI GAGGAG 2 cut(s) 106, 294
BseXI GCAGC 3 cut(s) 224, 241, 520
BshFI GGCC 2 cut(s) 11, 310
BsiSI CCGG 1 cut(s) 292
BslI CCNNNNNNNGG 6 cut(s) 298, 321, 383, 419, 464, 543
BsmAI GTCTC 2 cut(s) 441, 558
BsmBI CGTCTC 1 cut(s) 558
BsnI GGCC 2 cut(s) 11, 310
Bso31I GGTCTC 1 cut(s) 441
Bsp1286I GDGCHC 1 cut(s) 236
Bsp143I GATC 3 cut(s) 130, 324, 407
BspACI CCGC 2 cut(s) 374, 489
BspANI GGCC 2 cut(s) 11, 310
BspLI GGNNCC 1 cut(s) 303
BspPI GGATC 2 cut(s) 332, 415
BspTNI GGTCTC 1 cut(s) 441
BsrDI GCAATG 1 cut(s) 204
BsrI ACTGG 1 cut(s) 150
BssECI CCNNGG 4 cut(s) 305, 320, 457, 537
BssMI GATC 3 cut(s) 130, 324, 407
BssT1I CCWWGG 1 cut(s) 320
Bst2UI CCWGG 3 cut(s) 340, 459, 465
Bst4CI ACNGT 1 cut(s) 501
BstAPI GCANNNNNTGC 1 cut(s) 533
BstDSI CCRYGG 1 cut(s) 537
BstENI CCTNNNNNAGG 1 cut(s) 319
BstF5I GGATG 1 cut(s) 14
BstKTI GATC 3 cut(s) 133, 327, 410
BstMAI GTCTC 2 cut(s) 441, 558
BstMBI GATC 3 cut(s) 130, 324, 407
BstMWI GCNNNNNNNGC 6 cut(s) 111, 194, 254, 486, 533, 539
BstNI CCWGG 3 cut(s) 340, 459, 465
BstSCI CCNGG 3 cut(s) 338, 457, 463
BstV1I GCAGC 3 cut(s) 224, 241, 520
BstV2I GAAGAC 1 cut(s) 288
BsuRI GGCC 2 cut(s) 11, 310
BtgI CCRYGG 1 cut(s) 537
BtsCI GGATG 1 cut(s) 14
CaiI CAGNNNCTG 1 cut(s) 464
Cfr13I GGNCC 2 cut(s) 342, 461
CspCI CAANNNNNGTGG 2 cut(s) 247, 282
CviAII CATG 1 cut(s) 102
DpnI GATC 3 cut(s) 132, 326, 409
DpnII GATC 3 cut(s) 130, 324, 407
EciI GGCGGA 1 cut(s) 363
Eco130I CCWWGG 1 cut(s) 320
Eco24I GRGCYC 1 cut(s) 236
Eco31I GGTCTC 1 cut(s) 441
Eco47I GGWCC 2 cut(s) 342, 461
Eco57I CTGAAG 1 cut(s) 234
EcoNI CCTNNNNNAGG 1 cut(s) 319
EcoO109I RGGNCCY 1 cut(s) 461
EcoRII CCWGG 3 cut(s) 338, 457, 463
EcoT14I CCWWGG 1 cut(s) 320
EcoT38I GRGCYC 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 320
Esp3I CGTCTC 1 cut(s) 558
FaeI CATG 1 cut(s) 105
FaiI YATR 5 cut(s) 91, 103, 393, 399, 405
FatI CATG 1 cut(s) 101
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 4 cut(s) 213, 255, 490, 534
FriOI GRGCYC 1 cut(s) 236
Fsp4HI GCNGC 4 cut(s) 213, 255, 490, 534
FspBI CTAG 1 cut(s) 321
GluI GCNGC 4 cut(s) 213, 255, 490, 534
HaeIII GGCC 2 cut(s) 11, 310
HapII CCGG 1 cut(s) 292
Hin1II CATG 1 cut(s) 105
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HinfI GANTC 2 cut(s) 226, 549
HpaII CCGG 1 cut(s) 292
HphI GGTGA 3 cut(s) 78, 214, 402
Hpy166II GTNNAC 2 cut(s) 225, 281
Hpy188I TCNGA 2 cut(s) 124, 138
Hpy188III TCNNGA 2 cut(s) 242, 561
Hpy8I GTNNAC 2 cut(s) 225, 281
HpyAV CCTTC 1 cut(s) 321
HpyCH4III ACNGT 1 cut(s) 501
HpyCH4V TGCA 4 cut(s) 35, 105, 188, 527
HpyF10VI GCNNNNNNNGC 6 cut(s) 111, 194, 254, 486, 533, 539
Hsp92II CATG 1 cut(s) 105
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 3 cut(s) 130, 324, 407
LmnI GCTCC 3 cut(s) 119, 307, 376
Lsp1109I GCAGC 3 cut(s) 224, 241, 520
LweI GCATC 1 cut(s) 235
MaeI CTAG 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 202
MalI GATC 3 cut(s) 132, 326, 409
MboI GATC 3 cut(s) 130, 324, 407
MboII GAAGA 4 cut(s) 70, 288, 581, 584
MfeI CAATTG 1 cut(s) 528
MhlI GDGCHC 1 cut(s) 236
MluCI AATT 4 cut(s) 159, 182, 334, 528
MlyI GAGTC 1 cut(s) 220
MmeI TCCRAC 1 cut(s) 520
MnlI CCTC 5 cut(s) 22, 127, 315, 325, 372
MseI TTAA 1 cut(s) 589
MspA1I CMGCKG 2 cut(s) 215, 254
MspI CCGG 1 cut(s) 292
MspR9I CCNGG 3 cut(s) 340, 459, 465
MunI CAATTG 1 cut(s) 528
MvaI CCWGG 3 cut(s) 340, 459, 465
MwoI GCNNNNNNNGC 6 cut(s) 111, 194, 254, 486, 533, 539
NdeII GATC 3 cut(s) 130, 324, 407
NlaIII CATG 1 cut(s) 105
NlaIV GGNNCC 1 cut(s) 303
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 1 cut(s) 202
PfeI GAWTC 1 cut(s) 549
PflMI CCANNNNNTGG 2 cut(s) 419, 464
PfoI TCCNGGA 1 cut(s) 338
PkrI GCNGC 4 cut(s) 214, 256, 491, 535
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PpuMI RGGWCCY 1 cut(s) 461
Psp5II RGGWCCY 1 cut(s) 461
Psp6I CCWGG 3 cut(s) 338, 457, 463
PspGI CCWGG 3 cut(s) 338, 457, 463
PspN4I GGNNCC 1 cut(s) 303
PspPI GGNCC 2 cut(s) 342, 461
PspPPI RGGWCCY 1 cut(s) 461
PstNI CAGNNNCTG 1 cut(s) 464
PvuII CAGCTG 2 cut(s) 215, 254
SaqAI TTAA 1 cut(s) 589
SatI GCNGC 4 cut(s) 213, 255, 490, 534
Sau3AI GATC 3 cut(s) 130, 324, 407
Sau96I GGNCC 2 cut(s) 342, 461
SchI GAGTC 1 cut(s) 220
ScrFI CCNGG 3 cut(s) 340, 459, 465
SduI GDGCHC 1 cut(s) 236
SetI ASST 8 cut(s) 29, 116, 145, 217, 256, 280, 463, 508
SfaNI GCATC 1 cut(s) 235
SinI GGWCC 2 cut(s) 342, 461
Sse9I AATT 4 cut(s) 159, 182, 334, 528
SsiI CCGC 2 cut(s) 374, 489
SspI AATATT 1 cut(s) 349
SspMI CTAG 1 cut(s) 321
StyD4I CCNGG 3 cut(s) 338, 457, 463
StyI CCWWGG 1 cut(s) 320
TaaI ACNGT 1 cut(s) 501
TasI AATT 4 cut(s) 159, 182, 334, 528
TauI GCSGC 1 cut(s) 492
TfiI GAWTC 1 cut(s) 549
Tru1I TTAA 1 cut(s) 589
Tru9I TTAA 1 cut(s) 589
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 3 cut(s) 212, 254, 533
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 2 cut(s) 171, 435
Van91I CCANNNNNTGG 2 cut(s) 419, 464
VpaK11BI GGWCC 2 cut(s) 342, 461
XagI CCTNNNNNAGG 1 cut(s) 319
XapI RAATTY 1 cut(s) 159
XmaJI CCTAGG 1 cut(s) 320
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.