Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014387

Physical Location & Seq

Genomic Coordinates Reverse (-)

23283617 .. 23286005

Gene Structure 2389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGGAAGCAGTCCAGCTCCGTTTGCCGATATTGGCAAGAAAGCCAAAGATCTCCTAAACAAGGATTACATTTTTGACCACAAGTTTACTCTCACAATGCTGAGTGCTACAGGAACGGAATTTGTGGCTACTGGTTTGAAGAAGGATGATTTCTTTTTTGGCGATATAAGCACACTATATAAAGGTCAAAACACCATTGTTGATCTGAAAATCGACAGCCACTCTAGTGTGTCGACGAAAGTAACTCTCAAAAATCTCTTGCCATCCGCTAAAGCTGTAATTAGTTTCAAAATACCTGATCACAAGTCTGGCAAGCTGGATGTGCAATATGTTCATCCTCATGCTACGCTCAATTCCAGCATTGGCCTCAACCCAACTCCTCTGTTAGATCTATCAGCAACTATCGGAAGCCAGAATGTTTGCCTTGGTGGTGAAGTCAGTTTCGACACAGCTTCATCATCACTAACAAAGTACAATGCAGGGATTGGTTTCAACAACCAAGGCGTCTCTGCTGCACTCATACTGGAGGATAAAGGGGAGAGTCTGAGAGCTACTTACGTCCACACAGTGAACCCAACCACATCCTTTGGTGCAGAACTGATCCGTCGCTTCTCCAATTATAACAACAGCTTCACCGTCGGAAGCTCTCACTCTGTGGATCAATTCACAGTGGTTAAGACCAGATTTTCTAACAGTGGGAAAGCAGGGATGGTGGTCCAGAGAGAATGGAGACCGAAGTCGCACATCACTTTCTCAGCTGAGTATGACTCAAAGGCTGTGACCTCTTCACCAAAGCTTGGTCTCGCCCTCGCCCTCAAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008308 GO:0008509 GO:0009605 GO:0009607 GO:0009617 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071944 GO:0098656

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

274

Amino Acids

29.51

Weight (kDa)

9.23

Isoelectric Point (pI)

23.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	5 - 267	8.7e-75	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57490
fragaria_vesca	FvH4_4g09860 FvH4_4g09860
malus_domestica	MD00G1064400.v1.1
prunus_persica	Prupe.1G086700_v2.0.a1 Prupe.1G086700_v2.0.a1
pyrus_communis	pycom16g21790
rosa_chinensis	RchiOBHm_Chr4g0402631
rosa_laevigata	RLG00000009060
rosa_multiflora	Rmu_sc0013411.1_g000011
rosa_roxburghii	Rroxscaffold_5G00347340
rosa_rugosa	Rorug04G0037200
rosa_samantha	Rh4AG114800 Rh4BG107100 Rh4CG121500 Rh4DG107000
rosa_wichuraiana	Rw4G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	621
AccB7I	CCANNNNNTGG	1 cut(s)	797
AccI	GTMKAC	1 cut(s)	233
AciI	CCGC	1 cut(s)	267
AclWI	GGATC	2 cut(s)	595, 666
AcsI	RAATTY	1 cut(s)	119
AcyI	GRCGYC	1 cut(s)	504
AdeI	CACNNNGTG	2 cut(s)	568, 655
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	2 cut(s)	61, 797
AgsI	TTSAA	3 cut(s)	139, 289, 493
AleI	CACNNNNGTG	1 cut(s)	225
AluBI	AGCT	9 cut(s)	17, 275, 316, 452, 551, 630, 645, 758, 796
AluI	AGCT	9 cut(s)	17, 275, 316, 452, 551, 630, 645, 758, 796
Alw26I	GTCTC	3 cut(s)	511, 724, 806
AlwI	GGATC	2 cut(s)	595, 666
AoxI	GGCC	1 cut(s)	364
ApeKI	GCWGC	1 cut(s)	512
ApoI	RAATTY	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	715
AsuHPI	GGTGA	3 cut(s)	443, 625, 780
AvaII	GGWCC	1 cut(s)	715
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	2 cut(s)	271, 703
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	3 cut(s)	511, 724, 806
BfaI	CTAG	1 cut(s)	225
BfmI	CTRYAG	1 cut(s)	108
BglII	AGATCT	2 cut(s)	49, 388
BisI	GCNGC	1 cut(s)	513
BlsI	GCNGC	1 cut(s)	514
Bme18I	GGWCC	1 cut(s)	715
BmgT120I	GGNCC	1 cut(s)	715
BoxI	GACNNNNGTC	1 cut(s)	736
BplI	GAGNNNNNCTC	2 cut(s)	752, 784
BpmI	CTGGAG	1 cut(s)	545
BsaHI	GRCGYC	1 cut(s)	504
BsaI	GGTCTC	2 cut(s)	724, 806
BsaJI	CCNNGG	2 cut(s)	424, 499
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 797
Bse1I	ACTGG	2 cut(s)	136, 528
BseDI	CCNNGG	2 cut(s)	424, 499
BseGI	GGATG	6 cut(s)	151, 263, 325, 334, 581, 714
BseLI	CCNNNNNNNGG	2 cut(s)	61, 797
BseMII	CTCAG	4 cut(s)	92, 536, 750, 768
BseNI	ACTGG	2 cut(s)	136, 528
BseRI	GAGGAG	1 cut(s)	369
BseXI	GCAGC	1 cut(s)	499
BsgI	GTGCAG	2 cut(s)	498, 612
BshFI	GGCC	1 cut(s)	366
BslI	CCNNNNNNNGG	2 cut(s)	61, 797
BsmAI	GTCTC	3 cut(s)	511, 724, 806
BsmBI	CGTCTC	1 cut(s)	511
BsnI	GGCC	1 cut(s)	366
Bso31I	GGTCTC	2 cut(s)	724, 806
Bsp143I	GATC	6 cut(s)	49, 202, 298, 388, 600, 658
BspACI	CCGC	1 cut(s)	267
BspANI	GGCC	1 cut(s)	366
BspCNI	CTCAG	4 cut(s)	93, 537, 751, 767
BspPI	GGATC	2 cut(s)	595, 666
BspTNI	GGTCTC	2 cut(s)	724, 806
BsrI	ACTGG	2 cut(s)	136, 528
BssECI	CCNNGG	2 cut(s)	424, 499
BssMI	GATC	6 cut(s)	49, 202, 298, 388, 600, 658
BssNI	GRCGYC	1 cut(s)	504
BssT1I	CCWWGG	2 cut(s)	424, 499
Bst4CI	ACNGT	4 cut(s)	568, 637, 670, 695
Bst6I	CTCTTC	1 cut(s)	790
BstACI	GRCGYC	1 cut(s)	504
BstC8I	GCNNGC	1 cut(s)	314
BstDEI	CTNAG	4 cut(s)	101, 545, 754, 759
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstF5I	GGATG	6 cut(s)	151, 263, 325, 334, 581, 714
BstKTI	GATC	6 cut(s)	52, 205, 301, 391, 603, 661
BstMAI	GTCTC	3 cut(s)	511, 724, 806
BstMBI	GATC	6 cut(s)	49, 202, 298, 388, 600, 658
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 168, 322
BstPAI	GACNNNNGTC	1 cut(s)	736
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	499
BstX2I	RGATCY	2 cut(s)	49, 388
BstYI	RGATCY	2 cut(s)	49, 388
BsuRI	GGCC	1 cut(s)	366
BtsCI	GGATG	6 cut(s)	151, 263, 325, 334, 581, 714
BtsIMutI	CAGTG	3 cut(s)	573, 675, 700
Cac8I	GCNNGC	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	715
CseI	GACGC	1 cut(s)	493
Csp6I	GTAC	1 cut(s)	472
CspCI	CAANNNNNGTGG	2 cut(s)	568, 603
CviAII	CATG	1 cut(s)	341
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	4 cut(s)	101, 545, 754, 759
DpnI	GATC	6 cut(s)	51, 204, 300, 390, 602, 660
DpnII	GATC	6 cut(s)	49, 202, 298, 388, 600, 658
DraIII	CACNNNGTG	2 cut(s)	568, 655
Eam1104I	CTCTTC	1 cut(s)	790
EarI	CTCTTC	1 cut(s)	790
Eco130I	CCWWGG	2 cut(s)	424, 499
Eco31I	GGTCTC	2 cut(s)	724, 806
Eco47I	GGWCC	1 cut(s)	715
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoT14I	CCWWGG	2 cut(s)	424, 499
ErhI	CCWWGG	2 cut(s)	424, 499
Esp3I	CGTCTC	1 cut(s)	511
FaeI	CATG	1 cut(s)	344
FaiI	YATR	9 cut(s)	167, 178, 180, 330, 342, 521, 621, 765, 823
FatI	CATG	1 cut(s)	340
FbaI	TGATCA	1 cut(s)	298
FblI	GTMKAC	1 cut(s)	233
Fnu4HI	GCNGC	1 cut(s)	513
FokI	GGATG	6 cut(s)	158, 250, 321, 332, 568, 721
Fsp4HI	GCNGC	1 cut(s)	513
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	1 cut(s)	513
GsuI	CTGGAG	1 cut(s)	545
HaeIII	GGCC	1 cut(s)	366
HgaI	GACGC	1 cut(s)	493
Hin1I	GRCGYC	1 cut(s)	504
Hin1II	CATG	1 cut(s)	344
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HindIII	AAGCTT	1 cut(s)	794
HinfI	GANTC	2 cut(s)	541, 767
HphI	GGTGA	3 cut(s)	443, 625, 780
Hpy166II	GTNNAC	4 cut(s)	87, 234, 562, 571
Hpy188I	TCNGA	4 cut(s)	207, 407, 546, 641
Hpy188III	TCNNGA	1 cut(s)	718
Hpy8I	GTNNAC	4 cut(s)	87, 234, 562, 571
Hpy99I	CGWCG	3 cut(s)	238, 609, 641
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	4 cut(s)	568, 637, 670, 695
HpyCH4IV	ACGT	1 cut(s)	558
HpyCH4V	TGCA	4 cut(s)	325, 479, 515, 593
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 168, 322
HpyF3I	CTNAG	4 cut(s)	101, 545, 754, 759
HpySE526I	ACGT	1 cut(s)	558
Hsp92I	GRCGYC	1 cut(s)	504
Hsp92II	CATG	1 cut(s)	344
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	6 cut(s)	49, 202, 298, 388, 600, 658
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	1 cut(s)	499
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	1 cut(s)	558
MaeIII	GTNAC	2 cut(s)	241, 778
MalI	GATC	6 cut(s)	51, 204, 300, 390, 602, 660
MboI	GATC	6 cut(s)	49, 202, 298, 388, 600, 658
MboII	GAAGA	2 cut(s)	151, 777
MflI	RGATCY	2 cut(s)	49, 388
MluCI	AATT	5 cut(s)	119, 279, 352, 616, 662
MlyI	GAGTC	2 cut(s)	550, 761
MmeI	TCCRAC	1 cut(s)	619
MnlI	CCTC	7 cut(s)	348, 377, 390, 520, 793, 818, 824
MseI	TTAA	1 cut(s)	675
MslI	CAYNNNNRTG	2 cut(s)	225, 339
MspA1I	CMGCKG	1 cut(s)	758
MwoI	GCNNNNNNNGC	3 cut(s)	23, 168, 322
NdeII	GATC	6 cut(s)	49, 202, 298, 388, 600, 658
NlaIII	CATG	1 cut(s)	344
NmuCI	GTSAC	1 cut(s)	778
OliI	CACNNNNGTG	1 cut(s)	225
PflMI	CCANNNNNTGG	1 cut(s)	797
PkrI	GCNGC	1 cut(s)	514
PleI	GAGTC	2 cut(s)	549, 761
PpsI	GAGTC	2 cut(s)	549, 761
PshAI	GACNNNNGTC	1 cut(s)	736
PsiI	TTATAA	1 cut(s)	621
PspPI	GGNCC	1 cut(s)	715
PsuI	RGATCY	2 cut(s)	49, 388
PvuII	CAGCTG	1 cut(s)	758
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
RseI	CAYNNNNRTG	2 cut(s)	225, 339
SalI	GTCGAC	1 cut(s)	232
SaqAI	TTAA	1 cut(s)	675
SatI	GCNGC	1 cut(s)	513
Sau3AI	GATC	6 cut(s)	49, 202, 298, 388, 600, 658
Sau96I	GGNCC	1 cut(s)	715
SchI	GAGTC	2 cut(s)	550, 761
SfcI	CTRYAG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	715
SmiMI	CAYNNNNRTG	2 cut(s)	225, 339
Sse9I	AATT	5 cut(s)	119, 279, 352, 616, 662
SsiI	CCGC	1 cut(s)	267
SspMI	CTAG	1 cut(s)	225
StyI	CCWWGG	2 cut(s)	424, 499
TaaI	ACNGT	4 cut(s)	568, 637, 670, 695
TaiI	ACGT	1 cut(s)	561
TaqI	TCGA	3 cut(s)	213, 233, 444
TaqII	GACCGA	1 cut(s)	748
TasI	AATT	5 cut(s)	119, 279, 352, 616, 662
TatI	WGTACW	1 cut(s)	471
Tru1I	TTAA	1 cut(s)	675
Tru9I	TTAA	1 cut(s)	675
TscAI	CASTG	3 cut(s)	573, 675, 700
TseFI	GTSAC	1 cut(s)	778
TseI	GCWGC	1 cut(s)	512
Tsp45I	GTSAC	1 cut(s)	778
TspDTI	ATGAA	2 cut(s)	323, 444
TspGWI	ACGGA	3 cut(s)	9, 131, 593
TspRI	CASTG	3 cut(s)	573, 675, 700
Van91I	CCANNNNNTGG	1 cut(s)	797
VpaK11BI	GGWCC	1 cut(s)	715
XagI	CCTNNNNNAGG	1 cut(s)	59
XapI	RAATTY	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	233
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.