Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0014387

Physical Location & Seq

Genomic Coordinates Reverse (-)

12084373 .. 12089804

Gene Structure 5432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g09860.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGGAAGCAGTCCAGCTCCATTTTCAGATATCGGCAAGCAAGCGAGAGCCCTTTTGACCAAGGACTACAACTTTGACCAAAAGTTTACCCTGTCGGTGGTGGGCTCTACTGGGCTGGGACTTACAGCTAATGGTGTGAAGAAAGACCAGATTTTTGTTGGTGATATAAATACCCTGTACAAGAGTGGAAACACCACTGTGGATGTTAAAGTTGATACGTATTCTAATGTGTCTACCAAAGTGACTCGCACTGATATCTTGCCAAATACCAAAATAACATGTAGCTTCAAAATTCCTGATCACAAATCTGGCAAGCTGGATGTGCAGTACCTTCATCCTCATGCAGCTATTGATTCCAGCATAGGCCTTAACCCGGCCCCTCTTTTAGAGTTATCAGCAACAATTGGAAGTAAGGATCTTAGTTTGGGTGGTGAAATTGGATTTGACACAGCATCTTCTTTATTGACCAAATACAATGCTGGGATCAGCTTCAACAAACCAGATTTCTCTGCTGCCCTTCTGCTGACGGACAAAGGAGAGACTTTGAAGGCAACTTATATTCATGATGTTAAGTCCTCCAGCGGCACTACGGTTGCTGCCGAACTAACCCATAGATTTTCTACATTGGAGAATAGCTTTACCTTGGGAAGTGCCCATTCAATTGATTCACATACTGTGGTGAAAACACGCTTCTCCGACAGTGGGAAAGCTGCCTTACTATGGCAGCGTGAATGGAGACCAAAGTCACTAATTACTTTCTCAGGAGAGTATGACTCAAAGGCGAGTAGTGCGGCCCCAAAGTTTGGTCTTGCCCTTGCGCTCAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008308 GO:0008509 GO:0009605 GO:0009607 GO:0009617 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071944 GO:0098656

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

277

Amino Acids

29.48

Weight (kDa)

8.95

Isoelectric Point (pI)

17.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	5 - 271	2.7e-66	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57490
fragaria_vesca	FvH4_4g09860 FvH4_4g09860
malus_domestica	MD00G1064400.v1.1
prunus_persica	Prupe.1G086700_v2.0.a1 Prupe.1G086700_v2.0.a1
pyrus_communis	pycom16g21790
rosa_chinensis	RchiOBHm_Chr4g0402631
rosa_laevigata	RLG00000009060
rosa_multiflora	Rmu_sc0013411.1_g000011
rosa_roxburghii	Rroxscaffold_5G00347340
rosa_rugosa	Rorug04G0037200
rosa_samantha	Rh4AG114800 Rh4BG107100 Rh4CG121500 Rh4DG107000
rosa_wichuraiana	Rw4G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	803
AccI	GTMKAC	1 cut(s)	233
AciI	CCGC	2 cut(s)	582, 791
AclWI	GGATC	2 cut(s)	423, 491
AcsI	RAATTY	1 cut(s)	291
AfaI	GTAC	2 cut(s)	179, 329
AfiI	CCNNNNNNNGG	5 cut(s)	97, 373, 702, 720, 803
AflIII	ACRYGT	1 cut(s)	278
AgsI	TTSAA	4 cut(s)	289, 493, 547, 660
AleI	CACNNNNGTG	1 cut(s)	197
AluBI	AGCT	8 cut(s)	17, 128, 285, 316, 347, 489, 636, 710
AluI	AGCT	8 cut(s)	17, 128, 285, 316, 347, 489, 636, 710
Alw26I	GTCTC	2 cut(s)	533, 730
AlwI	GGATC	2 cut(s)	423, 491
AoxI	GGCC	3 cut(s)	364, 375, 792
ApeKI	GCWGC	5 cut(s)	344, 512, 596, 710, 724
ApoI	RAATTY	1 cut(s)	291
ArsI	GACNNNNNNTTYG	4 cut(s)	56, 88, 137, 169
AspLEI	GCGC	1 cut(s)	820
AspS9I	GGNCC	2 cut(s)	376, 793
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	3 cut(s)	173, 443, 691
BaeGI	GKGCMC	1 cut(s)	655
BanII	GRGCYC	2 cut(s)	52, 107
BbvI	GCAGC	5 cut(s)	356, 499, 583, 697, 736
BclI	TGATCA	1 cut(s)	298
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	2 cut(s)	533, 730
BisI	GCNGC	7 cut(s)	345, 513, 583, 597, 711, 725, 792
BlsI	GCNGC	7 cut(s)	346, 514, 584, 598, 712, 726, 793
Bme1390I	CCNGG	1 cut(s)	374
BmgT120I	GGNCC	2 cut(s)	376, 793
BmiI	GGNNCC	2 cut(s)	378, 795
BmrFI	CCNGG	1 cut(s)	374
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	1 cut(s)	461
BmuI	ACTGGG	1 cut(s)	120
BoxI	GACNNNNGTC	1 cut(s)	742
BplI	GAGNNNNNCTC	2 cut(s)	758, 790
BpmI	CTGGAG	1 cut(s)	562
BpuEI	CTTGAG	1 cut(s)	806
BpuMI	CCSGG	1 cut(s)	374
BsaAI	YACGTR	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	730
BsaJI	CCNNGG	2 cut(s)	60, 642
Bsc4I	CCNNNNNNNGG	5 cut(s)	97, 373, 702, 720, 803
Bse1I	ACTGG	1 cut(s)	115
BseDI	CCNNGG	2 cut(s)	60, 642
BseGI	GGATG	3 cut(s)	208, 325, 334
BseLI	CCNNNNNNNGG	5 cut(s)	97, 373, 702, 720, 803
BseMII	CTCAG	1 cut(s)	774
BseNI	ACTGG	1 cut(s)	115
BseSI	GKGCMC	1 cut(s)	655
BseXI	GCAGC	5 cut(s)	356, 499, 583, 697, 736
BseYI	CCCAGC	2 cut(s)	115, 479
BsgI	GTGCAG	1 cut(s)	344
BshFI	GGCC	3 cut(s)	366, 377, 794
BsiSI	CCGG	1 cut(s)	374
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	5 cut(s)	97, 373, 702, 720, 803
BsmAI	GTCTC	2 cut(s)	533, 730
BsmFI	GGGAC	1 cut(s)	132
BsnI	GGCC	3 cut(s)	366, 377, 794
Bso31I	GGTCTC	1 cut(s)	730
Bsp1286I	GDGCHC	3 cut(s)	52, 107, 655
Bsp1407I	TGTACA	1 cut(s)	177
Bsp143I	GATC	3 cut(s)	298, 415, 483
BspACI	CCGC	2 cut(s)	582, 791
BspANI	GGCC	3 cut(s)	366, 377, 794
BspCNI	CTCAG	1 cut(s)	773
BspHI	TCATGA	1 cut(s)	562
BspLI	GGNNCC	2 cut(s)	378, 795
BspPI	GGATC	2 cut(s)	423, 491
BspTNI	GGTCTC	1 cut(s)	730
BsrGI	TGTACA	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	2 cut(s)	60, 642
BssMI	GATC	3 cut(s)	298, 415, 483
BssT1I	CCWWGG	2 cut(s)	60, 642
Bst4CI	ACNGT	4 cut(s)	199, 592, 676, 701
BstAUI	TGTACA	1 cut(s)	177
BstBAI	YACGTR	1 cut(s)	219
BstC8I	GCNNGC	3 cut(s)	38, 42, 314
BstDEI	CTNAG	2 cut(s)	419, 760
BstF5I	GGATG	3 cut(s)	208, 325, 334
BstHHI	GCGC	1 cut(s)	820
BstKTI	GATC	3 cut(s)	301, 418, 486
BstMAI	GTCTC	2 cut(s)	533, 730
BstMBI	GATC	3 cut(s)	298, 415, 483
BstMWI	GCNNNNNNNGC	2 cut(s)	322, 788
BstNSI	RCATGY	1 cut(s)	282
BstPAI	GACNNNNGTC	1 cut(s)	742
BstSCI	CCNGG	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	655
BstSNI	TACGTA	1 cut(s)	219
BstV1I	GCAGC	5 cut(s)	356, 499, 583, 697, 736
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	3 cut(s)	366, 377, 794
BtsCI	GGATG	3 cut(s)	208, 325, 334
BtsIMutI	CAGTG	3 cut(s)	195, 249, 706
Cac8I	GCNNGC	3 cut(s)	38, 42, 314
CciI	TCATGA	1 cut(s)	562
CfoI	GCGC	1 cut(s)	820
Cfr13I	GGNCC	2 cut(s)	376, 793
Csp6I	GTAC	2 cut(s)	178, 328
CviAII	CATG	3 cut(s)	279, 341, 563
CviQI	GTAC	2 cut(s)	178, 328
DdeI	CTNAG	2 cut(s)	419, 760
DpnI	GATC	3 cut(s)	300, 417, 485
DpnII	GATC	3 cut(s)	298, 415, 483
Eco105I	TACGTA	1 cut(s)	219
Eco130I	CCWWGG	2 cut(s)	60, 642
Eco147I	AGGCCT	1 cut(s)	366
Eco24I	GRGCYC	2 cut(s)	52, 107
Eco31I	GGTCTC	1 cut(s)	730
Eco32I	GATATC	2 cut(s)	31, 256
EcoRV	GATATC	2 cut(s)	31, 256
EcoT14I	CCWWGG	2 cut(s)	60, 642
EcoT38I	GRGCYC	2 cut(s)	52, 107
ErhI	CCWWGG	2 cut(s)	60, 642
FaeI	CATG	3 cut(s)	282, 344, 566
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	3 cut(s)	278, 340, 562
FbaI	TGATCA	1 cut(s)	298
FblI	GTMKAC	1 cut(s)	233
Fnu4HI	GCNGC	7 cut(s)	345, 513, 583, 597, 711, 725, 792
FokI	GGATG	3 cut(s)	215, 321, 332
FriOI	GRGCYC	2 cut(s)	52, 107
Fsp4HI	GCNGC	7 cut(s)	345, 513, 583, 597, 711, 725, 792
GlaI	GCGC	1 cut(s)	819
GluI	GCNGC	7 cut(s)	345, 513, 583, 597, 711, 725, 792
GsaI	CCCAGC	2 cut(s)	119, 483
GsuI	CTGGAG	1 cut(s)	562
HaeIII	GGCC	3 cut(s)	366, 377, 794
HapII	CCGG	1 cut(s)	374
HhaI	GCGC	1 cut(s)	820
Hin1II	CATG	3 cut(s)	282, 344, 566
Hin6I	GCGC	1 cut(s)	818
HinP1I	GCGC	1 cut(s)	818
HinfI	GANTC	4 cut(s)	244, 353, 665, 773
HpaII	CCGG	1 cut(s)	374
HphI	GGTGA	3 cut(s)	173, 443, 691
Hpy166II	GTNNAC	2 cut(s)	87, 234
Hpy188I	TCNGA	2 cut(s)	28, 697
Hpy188III	TCNNGA	3 cut(s)	296, 563, 762
Hpy8I	GTNNAC	2 cut(s)	87, 234
HpyAV	CCTTC	3 cut(s)	341, 527, 541
HpyCH4III	ACNGT	4 cut(s)	199, 592, 676, 701
HpyCH4IV	ACGT	1 cut(s)	218
HpyCH4V	TGCA	2 cut(s)	325, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	322, 788
HpyF3I	CTNAG	2 cut(s)	419, 760
HpySE526I	ACGT	1 cut(s)	218
Hsp92II	CATG	3 cut(s)	282, 344, 566
HspAI	GCGC	1 cut(s)	818
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	3 cut(s)	298, 415, 483
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	5 cut(s)	356, 499, 583, 697, 736
LweI	GCATC	1 cut(s)	461
MaeII	ACGT	1 cut(s)	218
MaeIII	GTNAC	2 cut(s)	241, 744
MalI	GATC	3 cut(s)	300, 417, 485
MboI	GATC	3 cut(s)	298, 415, 483
MboII	GAAGA	2 cut(s)	151, 447
MfeI	CAATTG	2 cut(s)	402, 660
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	3 cut(s)	52, 107, 655
MluCI	AATT	5 cut(s)	291, 402, 435, 660, 750
MlyI	GAGTC	2 cut(s)	238, 767
MmeI	TCCRAC	1 cut(s)	720
MnlI	CCTC	3 cut(s)	348, 390, 586
MseI	TTAA	3 cut(s)	207, 369, 570
MslI	CAYNNNNRTG	2 cut(s)	197, 339
MspA1I	CMGCKG	1 cut(s)	582
MspI	CCGG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	374
MunI	CAATTG	2 cut(s)	402, 660
MwoI	GCNNNNNNNGC	2 cut(s)	322, 788
NciI	CCSGG	1 cut(s)	374
NdeII	GATC	3 cut(s)	298, 415, 483
NlaIII	CATG	3 cut(s)	282, 344, 566
NlaIV	GGNNCC	2 cut(s)	378, 795
NmuCI	GTSAC	2 cut(s)	241, 744
NspI	RCATGY	1 cut(s)	282
OliI	CACNNNNGTG	1 cut(s)	197
PagI	TCATGA	1 cut(s)	562
PceI	AGGCCT	1 cut(s)	366
PciI	ACATGT	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	353, 665
PflMI	CCANNNNNTGG	1 cut(s)	803
PkrI	GCNGC	7 cut(s)	346, 514, 584, 598, 712, 726, 793
PleI	GAGTC	2 cut(s)	238, 767
PpsI	GAGTC	2 cut(s)	238, 767
Ppu21I	YACGTR	1 cut(s)	219
PscI	ACATGT	1 cut(s)	278
PshAI	GACNNNNGTC	1 cut(s)	742
PspFI	CCCAGC	2 cut(s)	115, 479
PspN4I	GGNNCC	2 cut(s)	378, 795
PspPI	GGNCC	2 cut(s)	376, 793
PsuI	RGATCY	1 cut(s)	415
RsaI	GTAC	2 cut(s)	179, 329
RsaNI	GTAC	2 cut(s)	178, 328
RseI	CAYNNNNRTG	2 cut(s)	197, 339
SaqAI	TTAA	3 cut(s)	207, 369, 570
SatI	GCNGC	7 cut(s)	345, 513, 583, 597, 711, 725, 792
Sau3AI	GATC	3 cut(s)	298, 415, 483
Sau96I	GGNCC	2 cut(s)	376, 793
SchI	GAGTC	2 cut(s)	238, 767
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	3 cut(s)	52, 107, 655
SfaNI	GCATC	1 cut(s)	461
SmiMI	CAYNNNNRTG	2 cut(s)	197, 339
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
SnaBI	TACGTA	1 cut(s)	219
Sse9I	AATT	5 cut(s)	291, 402, 435, 660, 750
SseBI	AGGCCT	1 cut(s)	366
SsiI	CCGC	2 cut(s)	582, 791
StuI	AGGCCT	1 cut(s)	366
StyD4I	CCNGG	1 cut(s)	372
StyI	CCWWGG	2 cut(s)	60, 642
TaaI	ACNGT	4 cut(s)	199, 592, 676, 701
TaiI	ACGT	1 cut(s)	221
TasI	AATT	5 cut(s)	291, 402, 435, 660, 750
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	2 cut(s)	585, 794
TfiI	GAWTC	2 cut(s)	353, 665
Tru1I	TTAA	3 cut(s)	207, 369, 570
Tru9I	TTAA	3 cut(s)	207, 369, 570
TscAI	CASTG	3 cut(s)	202, 256, 706
TseFI	GTSAC	2 cut(s)	241, 744
TseI	GCWGC	5 cut(s)	344, 512, 596, 710, 724
Tsp45I	GTSAC	2 cut(s)	241, 744
TspDTI	ATGAA	2 cut(s)	323, 551
TspGWI	ACGGA	1 cut(s)	542
TspRI	CASTG	3 cut(s)	202, 256, 706
Van91I	CCANNNNNTGG	1 cut(s)	803
XapI	RAATTY	1 cut(s)	291
XceI	RCATGY	1 cut(s)	282
XcmI	CCANNNNNNNNNTGG	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.