Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0014387

Physical Location & Seq

Genomic Coordinates Reverse (-)

18299976 .. 18305227

Gene Structure 5252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG107100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGGAAGCAGTCCGGCGCCATTTTCAGATATCGGCAAGAAAGCAAAAGACCTTCTGACCAAGGATTACAACTTTGACCAAAAGTTTACCCTGTCGGTGGTGGGCTCTACTGGGCTGGGACTTACAGCTAATGGTTTGAAGAAGGACCAGATTTTTGTTGGTGATATAAATACCCTGTACAAGAGCGGAAACATCACTGTGGATGTTAAAGTTGATACCTATTCAAATGTGTCTACAAAAGTGACTAAGACTGATATCTTGCCAAATACCAAGATAGCATGTAGCTTCAAAATTCCAGATCACAAATCTGGCAAGCTGGATGTGCAGTACCTTCATCCTCATGCAGCTATTGATTCCAGCATAGGCCTTAACCCAGCCCCTCTTTTAGAGTTATCAGCAACAATTGGAAGTAAGGATCTTTGTTTGGGTGGTGAAATTGGATTTGACACAGCATCTTCTTTGTTGACCAAATACAATGCTGGGATCAGCTTCAACAAGCCAGATTTCTCTGCTGCCCTTCTGCTGACGGACAAAGGACAGACGTTGAAGGCAACTTACATTCACGCTGTTGATTCTGCCAATGGCACTACAGTTGCTGCCGAACTTACCCATAGATTTTCTACGTTGGAGAAGAGCTTTACCTTGGGAAGTGCCCATGCAATTGATCCACATACTGTGGTGAAAACACGCTTATCTGACAGTGGGAAAGCTGCCTTACTATGGCAGCGTGAATGGAGACCGAAGTCACTAATTACTTTCTCGGGAGAGTATGACTCAAAGGCGAGTAGTGCAGCCCCAAAGTTTGGTCTTTCCCTCGCGCTCAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008308 GO:0008509 GO:0009605 GO:0009607 GO:0009617 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071944 GO:0098656

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

276

Amino Acids

29.43

Weight (kDa)

8.99

Isoelectric Point (pI)

18.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	5 - 269	2.1e-69	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57490
fragaria_vesca	FvH4_4g09860 FvH4_4g09860
malus_domestica	MD00G1064400.v1.1
prunus_persica	Prupe.1G086700_v2.0.a1 Prupe.1G086700_v2.0.a1
pyrus_communis	pycom16g21790
rosa_chinensis	RchiOBHm_Chr4g0402631
rosa_laevigata	RLG00000009060
rosa_multiflora	Rmu_sc0013411.1_g000011
rosa_roxburghii	Rroxscaffold_5G00347340
rosa_rugosa	Rorug04G0037200
rosa_samantha	Rh4AG114800 Rh4BG107100 Rh4CG121500 Rh4DG107000
rosa_wichuraiana	Rw4G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	16
AccB7I	CCANNNNNTGG	1 cut(s)	803
AccBSI	CCGCTC	1 cut(s)	186
AccI	GTMKAC	1 cut(s)	233
AccII	CGCG	1 cut(s)	818
AciI	CCGC	1 cut(s)	186
AclWI	GGATC	3 cut(s)	423, 491, 659
AcsI	RAATTY	1 cut(s)	291
AcyI	GRCGYC	1 cut(s)	17
AfaI	GTAC	2 cut(s)	179, 329
AfiI	CCNNNNNNNGG	3 cut(s)	97, 720, 803
AgsI	TTSAA	5 cut(s)	139, 225, 289, 493, 547
AluBI	AGCT	7 cut(s)	128, 285, 316, 347, 489, 636, 710
AluI	AGCT	7 cut(s)	128, 285, 316, 347, 489, 636, 710
Alw26I	GTCTC	1 cut(s)	730
AlwI	GGATC	3 cut(s)	423, 491, 659
AlwNI	CAGNNNCTG	1 cut(s)	596
Ama87I	CYCGRG	1 cut(s)	760
AoxI	GGCC	1 cut(s)	364
ApeKI	GCWGC	6 cut(s)	344, 512, 596, 710, 724, 791
ApoI	RAATTY	1 cut(s)	291
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
AspLEI	GCGC	2 cut(s)	19, 820
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	3 cut(s)	173, 443, 691
AvaI	CYCGRG	1 cut(s)	760
AvaII	GGWCC	1 cut(s)	145
BaeGI	GKGCMC	1 cut(s)	655
BanI	GGYRCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	107
BarI	GAAGNNNNNNTAC	2 cut(s)	539, 571
BbvI	GCAGC	6 cut(s)	356, 499, 583, 697, 736, 803
BcoDI	GTCTC	1 cut(s)	730
BfmI	CTRYAG	1 cut(s)	588
BfoI	RGCGCY	1 cut(s)	20
BisI	GCNGC	6 cut(s)	345, 513, 597, 711, 725, 792
BlsI	GCNGC	6 cut(s)	346, 514, 598, 712, 726, 793
Bme18I	GGWCC	1 cut(s)	145
BmeT110I	CYCGRG	1 cut(s)	760
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	18
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	1 cut(s)	461
BmuI	ACTGGG	1 cut(s)	120
BoxI	GACNNNNGTC	1 cut(s)	742
BplI	GAGNNNNNCTC	2 cut(s)	758, 790
BpuEI	CTTGAG	1 cut(s)	806
BsaHI	GRCGYC	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	730
BsaJI	CCNNGG	2 cut(s)	60, 642
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 720, 803
Bse1I	ACTGG	1 cut(s)	115
BseDI	CCNNGG	2 cut(s)	60, 642
BseGI	GGATG	3 cut(s)	208, 325, 334
BseLI	CCNNNNNNNGG	3 cut(s)	97, 720, 803
BseNI	ACTGG	1 cut(s)	115
BseSI	GKGCMC	1 cut(s)	655
BseXI	GCAGC	6 cut(s)	356, 499, 583, 697, 736, 803
BseYI	CCCAGC	3 cut(s)	115, 373, 479
BsgI	GTGCAG	2 cut(s)	344, 810
Bsh1236I	CGCG	1 cut(s)	818
BshFI	GGCC	1 cut(s)	366
BshNI	GGYRCC	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	760
BsiSI	CCGG	1 cut(s)	14
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	3 cut(s)	97, 720, 803
BsmAI	GTCTC	1 cut(s)	730
BsmFI	GGGAC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	366
Bso31I	GGTCTC	1 cut(s)	730
BsoBI	CYCGRG	1 cut(s)	760
Bsp1286I	GDGCHC	2 cut(s)	107, 655
Bsp1407I	TGTACA	1 cut(s)	177
Bsp143I	GATC	4 cut(s)	298, 415, 483, 664
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	1 cut(s)	366
BspFNI	CGCG	1 cut(s)	818
BspLI	GGNNCC	1 cut(s)	18
BspPI	GGATC	3 cut(s)	423, 491, 659
BspQI	GCTCTTC	1 cut(s)	626
BspT107I	GGYRCC	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	730
BsrBI	CCGCTC	1 cut(s)	186
BsrGI	TGTACA	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	2 cut(s)	60, 642
BssMI	GATC	4 cut(s)	298, 415, 483, 664
BssNI	GRCGYC	1 cut(s)	17
BssT1I	CCWWGG	2 cut(s)	60, 642
Bst4CI	ACNGT	4 cut(s)	199, 592, 676, 701
Bst6I	CTCTTC	1 cut(s)	626
BstACI	GRCGYC	1 cut(s)	17
BstAUI	TGTACA	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	314
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	3 cut(s)	208, 325, 334
BstFNI	CGCG	1 cut(s)	818
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	2 cut(s)	19, 820
BstKTI	GATC	4 cut(s)	301, 418, 486, 667
BstMAI	GTCTC	1 cut(s)	730
BstMBI	GATC	4 cut(s)	298, 415, 483, 664
BstMWI	GCNNNNNNNGC	2 cut(s)	322, 788
BstNSI	RCATGY	1 cut(s)	282
BstPAI	GACNNNNGTC	1 cut(s)	742
BstSFI	CTRYAG	1 cut(s)	588
BstSLI	GKGCMC	1 cut(s)	655
BstUI	CGCG	1 cut(s)	818
BstV1I	GCAGC	6 cut(s)	356, 499, 583, 697, 736, 803
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	1 cut(s)	366
BtsCI	GGATG	3 cut(s)	208, 325, 334
BtsIMutI	CAGTG	2 cut(s)	195, 706
Cac8I	GCNNGC	1 cut(s)	314
CaiI	CAGNNNCTG	1 cut(s)	596
CfoI	GCGC	2 cut(s)	19, 820
Cfr13I	GGNCC	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	178, 328
CviAII	CATG	3 cut(s)	279, 341, 656
CviQI	GTAC	2 cut(s)	178, 328
DdeI	CTNAG	1 cut(s)	246
DinI	GGCGCC	1 cut(s)	18
DpnI	GATC	4 cut(s)	300, 417, 485, 666
DpnII	GATC	4 cut(s)	298, 415, 483, 664
Eam1104I	CTCTTC	1 cut(s)	626
EarI	CTCTTC	1 cut(s)	626
Eco130I	CCWWGG	2 cut(s)	60, 642
Eco147I	AGGCCT	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	107
Eco31I	GGTCTC	1 cut(s)	730
Eco32I	GATATC	2 cut(s)	31, 256
Eco47I	GGWCC	1 cut(s)	145
Eco88I	CYCGRG	1 cut(s)	760
EcoRV	GATATC	2 cut(s)	31, 256
EcoT14I	CCWWGG	2 cut(s)	60, 642
EcoT38I	GRGCYC	1 cut(s)	107
EgeI	GGCGCC	1 cut(s)	18
EheI	GGCGCC	1 cut(s)	18
ErhI	CCWWGG	2 cut(s)	60, 642
FaeI	CATG	3 cut(s)	282, 344, 659
FaiI	YATR	9 cut(s)	167, 280, 342, 362, 612, 657, 672, 721, 771
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	3 cut(s)	278, 340, 655
FblI	GTMKAC	1 cut(s)	233
Fnu4HI	GCNGC	6 cut(s)	345, 513, 597, 711, 725, 792
FokI	GGATG	3 cut(s)	215, 321, 332
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	6 cut(s)	345, 513, 597, 711, 725, 792
GlaI	GCGC	2 cut(s)	18, 819
GluI	GCNGC	6 cut(s)	345, 513, 597, 711, 725, 792
GsaI	CCCAGC	3 cut(s)	119, 377, 483
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	366
HapII	CCGG	1 cut(s)	14
HhaI	GCGC	2 cut(s)	19, 820
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	3 cut(s)	282, 344, 659
Hin6I	GCGC	2 cut(s)	17, 818
HinP1I	GCGC	2 cut(s)	17, 818
HincII	GTYRAC	1 cut(s)	465
HindII	GTYRAC	1 cut(s)	465
HinfI	GANTC	3 cut(s)	353, 572, 773
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	3 cut(s)	173, 443, 691
Hpy166II	GTNNAC	3 cut(s)	87, 234, 465
Hpy188I	TCNGA	3 cut(s)	28, 57, 697
Hpy188III	TCNNGA	2 cut(s)	296, 762
Hpy8I	GTNNAC	3 cut(s)	87, 234, 465
HpyAV	CCTTC	5 cut(s)	62, 136, 341, 527, 541
HpyCH4III	ACNGT	4 cut(s)	199, 592, 676, 701
HpyCH4IV	ACGT	2 cut(s)	542, 623
HpyCH4V	TGCA	4 cut(s)	325, 344, 659, 791
HpyF10VI	GCNNNNNNNGC	2 cut(s)	322, 788
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	2 cut(s)	542, 623
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	3 cut(s)	282, 344, 659
HspAI	GCGC	2 cut(s)	17, 818
KasI	GGCGCC	1 cut(s)	16
Kzo9I	GATC	4 cut(s)	298, 415, 483, 664
LguI	GCTCTTC	1 cut(s)	626
Lsp1109I	GCAGC	6 cut(s)	356, 499, 583, 697, 736, 803
LweI	GCATC	1 cut(s)	461
MaeII	ACGT	2 cut(s)	542, 623
MaeIII	GTNAC	2 cut(s)	241, 744
MalI	GATC	4 cut(s)	300, 417, 485, 666
MbiI	CCGCTC	1 cut(s)	186
MboI	GATC	4 cut(s)	298, 415, 483, 664
MboII	GAAGA	3 cut(s)	151, 447, 643
MfeI	CAATTG	2 cut(s)	402, 660
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	2 cut(s)	107, 655
MluCI	AATT	5 cut(s)	291, 402, 435, 660, 750
Mly113I	GGCGCC	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	767
MmeI	TCCRAC	1 cut(s)	606
MnlI	CCTC	3 cut(s)	348, 390, 824
MseI	TTAA	2 cut(s)	207, 369
MslI	CAYNNNNRTG	2 cut(s)	197, 339
MspI	CCGG	1 cut(s)	14
MunI	CAATTG	2 cut(s)	402, 660
MvnI	CGCG	1 cut(s)	818
MwoI	GCNNNNNNNGC	2 cut(s)	322, 788
NarI	GGCGCC	1 cut(s)	17
NdeII	GATC	4 cut(s)	298, 415, 483, 664
NlaIII	CATG	3 cut(s)	282, 344, 659
NlaIV	GGNNCC	1 cut(s)	18
NmuCI	GTSAC	2 cut(s)	241, 744
NspI	RCATGY	1 cut(s)	282
PceI	AGGCCT	1 cut(s)	366
PciSI	GCTCTTC	1 cut(s)	626
PfeI	GAWTC	2 cut(s)	353, 572
PflMI	CCANNNNNTGG	1 cut(s)	803
PkrI	GCNGC	6 cut(s)	346, 514, 598, 712, 726, 793
PleI	GAGTC	1 cut(s)	767
PluTI	GGCGCC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	767
PshAI	GACNNNNGTC	1 cut(s)	742
PspFI	CCCAGC	3 cut(s)	115, 373, 479
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	1 cut(s)	415
RsaI	GTAC	2 cut(s)	179, 329
RsaNI	GTAC	2 cut(s)	178, 328
RseI	CAYNNNNRTG	2 cut(s)	197, 339
SapI	GCTCTTC	1 cut(s)	626
SaqAI	TTAA	2 cut(s)	207, 369
SatI	GCNGC	6 cut(s)	345, 513, 597, 711, 725, 792
Sau3AI	GATC	4 cut(s)	298, 415, 483, 664
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	1 cut(s)	767
SduI	GDGCHC	2 cut(s)	107, 655
SfaNI	GCATC	1 cut(s)	461
SfcI	CTRYAG	1 cut(s)	588
SfoI	GGCGCC	1 cut(s)	18
SinI	GGWCC	1 cut(s)	145
SmiMI	CAYNNNNRTG	2 cut(s)	197, 339
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
Sse9I	AATT	5 cut(s)	291, 402, 435, 660, 750
SseBI	AGGCCT	1 cut(s)	366
SsiI	CCGC	1 cut(s)	186
SspDI	GGCGCC	1 cut(s)	16
StuI	AGGCCT	1 cut(s)	366
StyI	CCWWGG	2 cut(s)	60, 642
TaaI	ACNGT	4 cut(s)	199, 592, 676, 701
TaiI	ACGT	2 cut(s)	545, 626
TaqII	GACCGA	1 cut(s)	754
TasI	AATT	5 cut(s)	291, 402, 435, 660, 750
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	2 cut(s)	353, 572
Tru1I	TTAA	2 cut(s)	207, 369
Tru9I	TTAA	2 cut(s)	207, 369
TscAI	CASTG	2 cut(s)	202, 706
TseFI	GTSAC	2 cut(s)	241, 744
TseI	GCWGC	6 cut(s)	344, 512, 596, 710, 724, 791
Tsp45I	GTSAC	2 cut(s)	241, 744
TspDTI	ATGAA	1 cut(s)	323
TspGWI	ACGGA	1 cut(s)	542
TspRI	CASTG	2 cut(s)	202, 706
Van91I	CCANNNNNTGG	1 cut(s)	803
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	1 cut(s)	291
XceI	RCATGY	1 cut(s)	282
XcmI	CCANNNNNNNNNTGG	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.