Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0014387

Physical Location & Seq

Genomic Coordinates Reverse (-)

12105735 .. 12110879

Gene Structure 5145 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1064400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGGTAGCAGTCCAGCACCATTTTCAGATATTGGCAAGAGAGCAAAAGATCTATTGACCAAAGATTACAACTTTGACCAGAAGTTTACCCTGTCGGTGGTTGGCTCTACTGGGCTGGGACTTACAGCTAATGGTTTGAAGAGGGATGAAATTTTCATTGGTGATGTAAACACTCTGTACAAGAGTGGAAACACTACTGTGGATGTGAAAGTTGATACTTATTCTAATGTAGCTACAAAAGTGACTCTGAGTGATGTCTTGCCATGCACAAAAGTAGCATTGAGCTTCAGAATACCTGATCACAAATCTGGCAAGCTGGATGTGAAGTACCTTCATCCTCATGCGGCCTTTGATTCCAGCATAGGCCTGAACCCAACCCCTCTTTTAGAACTATCAGGGACAATTGGAAGTAAGGATCTTAGTTTGGGTGCTGAAATTGGATTTGACACAACATCCTCTTTGTTGACCAAATACAATGCTGGGATCAGCTATAACAAGCCAGATTTCTCTGCAGCGCTTTTGCTGATGGACAAAGGACAGACATTGAAGGCATCTTACATTCATGCTGTTGATTCCTTAAATGGAACTACAGTTGCTGCCGAACTGACCCACAGATTTTCCACCTACGAGAACAGTTTTACCCTTGGAAGCTCTCACGTAATTGATCCATTCAATGTAGTAAAAACACGGTTCTCCAACAATGGGAAAGCTGGCTTGCTATGGCAGCGTGAATGGAGACCAAAGTCACTAATAACAGTTTCAGCTGAGTACGACTCGAAGGCTCTTACTGCATCCCCAAAGGTAGGTCTTGCCCTTGCGCTCAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008308 GO:0008509 GO:0009605 GO:0009607 GO:0009617 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071944 GO:0098656

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

277

Amino Acids

29.69

Weight (kDa)

8.94

Isoelectric Point (pI)

17.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	5 - 269	7.2e-69	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57490
fragaria_vesca	FvH4_4g09860 FvH4_4g09860
malus_domestica	MD00G1064400.v1.1
prunus_persica	Prupe.1G086700_v2.0.a1 Prupe.1G086700_v2.0.a1
pyrus_communis	pycom16g21790
rosa_chinensis	RchiOBHm_Chr4g0402631
rosa_laevigata	RLG00000009060
rosa_multiflora	Rmu_sc0013411.1_g000011
rosa_roxburghii	Rroxscaffold_5G00347340
rosa_rugosa	Rorug04G0037200
rosa_samantha	Rh4AG114800 Rh4BG107100 Rh4CG121500 Rh4DG107000
rosa_wichuraiana	Rw4G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	344
AclWI	GGATC	3 cut(s)	423, 491, 659
AcsI	RAATTY	1 cut(s)	150
AcuI	CTGAAG	1 cut(s)	271
AfaI	GTAC	3 cut(s)	179, 329, 770
AfeI	AGCGCT	1 cut(s)	516
AfiI	CCNNNNNNNGG	3 cut(s)	97, 702, 803
AgsI	TTSAA	3 cut(s)	139, 547, 673
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AleI	CACNNNNGTG	1 cut(s)	197
AluBI	AGCT	8 cut(s)	128, 233, 285, 316, 489, 651, 710, 764
AluI	AGCT	8 cut(s)	128, 233, 285, 316, 489, 651, 710, 764
Alw26I	GTCTC	1 cut(s)	730
AlwI	GGATC	3 cut(s)	423, 491, 659
AlwNI	CAGNNNCTG	1 cut(s)	596
Aor51HI	AGCGCT	1 cut(s)	516
AoxI	GGCC	2 cut(s)	345, 364
ApeKI	GCWGC	3 cut(s)	512, 596, 724
ApoI	RAATTY	1 cut(s)	150
AspLEI	GCGC	2 cut(s)	517, 820
AsuHPI	GGTGA	1 cut(s)	173
BarI	GAAGNNNNNNTAC	2 cut(s)	539, 571
BbvI	GCAGC	3 cut(s)	524, 583, 736
BccI	CCATC	1 cut(s)	520
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	730
BfmI	CTRYAG	2 cut(s)	510, 588
BfoI	RGCGCY	1 cut(s)	518
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	4 cut(s)	345, 513, 597, 725
BlsI	GCNGC	4 cut(s)	346, 514, 598, 726
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	2 cut(s)	560, 800
BmuI	ACTGGG	1 cut(s)	120
BoxI	GACNNNNGTC	1 cut(s)	742
BplI	GAGNNNNNCTC	2 cut(s)	758, 790
BpuEI	CTTGAG	1 cut(s)	806
BsaAI	YACGTR	1 cut(s)	658
BsaI	GGTCTC	1 cut(s)	730
BsaJI	CCNNGG	1 cut(s)	643
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 702, 803
Bse1I	ACTGG	1 cut(s)	115
BseDI	CCNNGG	1 cut(s)	643
BseGI	GGATG	6 cut(s)	151, 208, 325, 334, 452, 791
BseLI	CCNNNNNNNGG	3 cut(s)	97, 702, 803
BseMII	CTCAG	2 cut(s)	239, 756
BseNI	ACTGG	1 cut(s)	115
BseXI	GCAGC	3 cut(s)	524, 583, 736
BseYI	CCCAGC	2 cut(s)	115, 479
BshFI	GGCC	2 cut(s)	347, 366
BslFI	GGGAC	2 cut(s)	132, 412
BslI	CCNNNNNNNGG	3 cut(s)	97, 702, 803
BsmAI	GTCTC	1 cut(s)	730
BsmFI	GGGAC	2 cut(s)	132, 412
BsnI	GGCC	2 cut(s)	347, 366
Bso31I	GGTCTC	1 cut(s)	730
Bsp1407I	TGTACA	1 cut(s)	177
Bsp143I	GATC	5 cut(s)	49, 298, 415, 483, 664
BspACI	CCGC	1 cut(s)	344
BspANI	GGCC	2 cut(s)	347, 366
BspCNI	CTCAG	2 cut(s)	240, 757
BspMAI	CTGCAG	1 cut(s)	514
BspPI	GGATC	3 cut(s)	423, 491, 659
BspTNI	GGTCTC	1 cut(s)	730
BsrGI	TGTACA	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	643
BssMI	GATC	5 cut(s)	49, 298, 415, 483, 664
BssT1I	CCWWGG	1 cut(s)	643
Bst4CI	ACNGT	5 cut(s)	199, 592, 635, 690, 757
Bst6I	CTCTTC	1 cut(s)	134
BstAUI	TGTACA	1 cut(s)	177
BstBAI	YACGTR	1 cut(s)	658
BstC8I	GCNNGC	3 cut(s)	314, 712, 716
BstDEI	CTNAG	3 cut(s)	248, 419, 765
BstF5I	GGATG	6 cut(s)	151, 208, 325, 334, 452, 791
BstH2I	RGCGCY	1 cut(s)	518
BstHHI	GCGC	2 cut(s)	517, 820
BstKTI	GATC	5 cut(s)	52, 301, 418, 486, 667
BstMAI	GTCTC	1 cut(s)	730
BstMBI	GATC	5 cut(s)	49, 298, 415, 483, 664
BstMWI	GCNNNNNNNGC	2 cut(s)	724, 788
BstPAI	GACNNNNGTC	1 cut(s)	742
BstSFI	CTRYAG	2 cut(s)	510, 588
BstV1I	GCAGC	3 cut(s)	524, 583, 736
BstX2I	RGATCY	2 cut(s)	49, 415
BstYI	RGATCY	2 cut(s)	49, 415
BsuRI	GGCC	2 cut(s)	347, 366
BtsCI	GGATG	6 cut(s)	151, 208, 325, 334, 452, 791
Cac8I	GCNNGC	3 cut(s)	314, 712, 716
CaiI	CAGNNNCTG	1 cut(s)	596
CfoI	GCGC	2 cut(s)	517, 820
Csp6I	GTAC	3 cut(s)	178, 328, 769
CviAII	CATG	3 cut(s)	264, 341, 563
CviQI	GTAC	3 cut(s)	178, 328, 769
DdeI	CTNAG	3 cut(s)	248, 419, 765
DpnI	GATC	5 cut(s)	51, 300, 417, 485, 666
DpnII	GATC	5 cut(s)	49, 298, 415, 483, 664
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	643
Eco147I	AGGCCT	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	730
Eco47III	AGCGCT	1 cut(s)	516
Eco57I	CTGAAG	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	643
ErhI	CCWWGG	1 cut(s)	643
FaeI	CATG	3 cut(s)	267, 344, 566
FaiI	YATR	6 cut(s)	265, 342, 362, 492, 564, 721
FaqI	GGGAC	2 cut(s)	132, 412
FatI	CATG	3 cut(s)	263, 340, 562
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	4 cut(s)	345, 513, 597, 725
FokI	GGATG	6 cut(s)	158, 215, 321, 332, 439, 778
Fsp4HI	GCNGC	4 cut(s)	345, 513, 597, 725
GlaI	GCGC	2 cut(s)	516, 819
GluI	GCNGC	4 cut(s)	345, 513, 597, 725
GsaI	CCCAGC	2 cut(s)	119, 483
HaeII	RGCGCY	1 cut(s)	518
HaeIII	GGCC	2 cut(s)	347, 366
HhaI	GCGC	2 cut(s)	517, 820
Hin1II	CATG	3 cut(s)	267, 344, 566
Hin6I	GCGC	2 cut(s)	515, 818
HinP1I	GCGC	2 cut(s)	515, 818
HincII	GTYRAC	1 cut(s)	465
HindII	GTYRAC	1 cut(s)	465
HinfI	GANTC	4 cut(s)	244, 353, 572, 773
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	3 cut(s)	87, 169, 465
Hpy188I	TCNGA	3 cut(s)	28, 249, 290
Hpy8I	GTNNAC	3 cut(s)	87, 169, 465
HpyAV	CCTTC	3 cut(s)	341, 541, 772
HpyCH4III	ACNGT	5 cut(s)	199, 592, 635, 690, 757
HpyCH4IV	ACGT	1 cut(s)	657
HpyCH4V	TGCA	3 cut(s)	267, 512, 791
HpyF10VI	GCNNNNNNNGC	2 cut(s)	724, 788
HpyF3I	CTNAG	3 cut(s)	248, 419, 765
HpySE526I	ACGT	1 cut(s)	657
Hsp92II	CATG	3 cut(s)	267, 344, 566
HspAI	GCGC	2 cut(s)	515, 818
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	5 cut(s)	49, 298, 415, 483, 664
Lsp1109I	GCAGC	3 cut(s)	524, 583, 736
LweI	GCATC	2 cut(s)	560, 800
MaeII	ACGT	1 cut(s)	657
MaeIII	GTNAC	2 cut(s)	241, 744
MalI	GATC	5 cut(s)	51, 300, 417, 485, 666
MboI	GATC	5 cut(s)	49, 298, 415, 483, 664
MboII	GAAGA	1 cut(s)	151
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	2 cut(s)	49, 415
MluCI	AATT	4 cut(s)	150, 402, 435, 660
MlyI	GAGTC	2 cut(s)	238, 767
MmeI	TCCRAC	1 cut(s)	720
MnlI	CCTC	4 cut(s)	135, 348, 390, 466
MseI	TTAA	1 cut(s)	578
MslI	CAYNNNNRTG	2 cut(s)	197, 339
MspA1I	CMGCKG	1 cut(s)	764
MunI	CAATTG	1 cut(s)	402
MwoI	GCNNNNNNNGC	2 cut(s)	724, 788
NdeII	GATC	5 cut(s)	49, 298, 415, 483, 664
NlaIII	CATG	3 cut(s)	267, 344, 566
NmuCI	GTSAC	2 cut(s)	241, 744
OliI	CACNNNNGTG	1 cut(s)	197
PceI	AGGCCT	1 cut(s)	366
PfeI	GAWTC	2 cut(s)	353, 572
PkrI	GCNGC	4 cut(s)	346, 514, 598, 726
PleI	GAGTC	2 cut(s)	238, 767
PpsI	GAGTC	2 cut(s)	238, 767
Ppu21I	YACGTR	1 cut(s)	658
PshAI	GACNNNNGTC	1 cut(s)	742
PspFI	CCCAGC	2 cut(s)	115, 479
PstI	CTGCAG	1 cut(s)	514
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	2 cut(s)	49, 415
PvuII	CAGCTG	1 cut(s)	764
RsaI	GTAC	3 cut(s)	179, 329, 770
RsaNI	GTAC	3 cut(s)	178, 328, 769
RseI	CAYNNNNRTG	2 cut(s)	197, 339
SaqAI	TTAA	1 cut(s)	578
SatI	GCNGC	4 cut(s)	345, 513, 597, 725
Sau3AI	GATC	5 cut(s)	49, 298, 415, 483, 664
SchI	GAGTC	2 cut(s)	238, 767
SfaNI	GCATC	2 cut(s)	560, 800
SfcI	CTRYAG	2 cut(s)	510, 588
SmiMI	CAYNNNNRTG	2 cut(s)	197, 339
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
Sse9I	AATT	4 cut(s)	150, 402, 435, 660
SseBI	AGGCCT	1 cut(s)	366
SsiI	CCGC	1 cut(s)	344
StuI	AGGCCT	1 cut(s)	366
StyI	CCWWGG	1 cut(s)	643
TaaI	ACNGT	5 cut(s)	199, 592, 635, 690, 757
TaiI	ACGT	1 cut(s)	660
TaqI	TCGA	1 cut(s)	776
TasI	AATT	4 cut(s)	150, 402, 435, 660
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	1 cut(s)	347
TfiI	GAWTC	2 cut(s)	353, 572
Tru1I	TTAA	1 cut(s)	578
Tru9I	TTAA	1 cut(s)	578
TseFI	GTSAC	2 cut(s)	241, 744
TseI	GCWGC	3 cut(s)	512, 596, 724
Tsp45I	GTSAC	2 cut(s)	241, 744
TspDTI	ATGAA	4 cut(s)	145, 162, 323, 551
XapI	RAATTY	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.