Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Forward (+)

5585356 .. 5589064

Gene Structure 3709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0037200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGAGCAAATAATGATGATATCGGTGAGGTTTGTGGCTATTCAATCTGTAGTGGTGTTGTGGTTTGTGGAAAGAGACTCAAGTGCTTGGGCCTTAAACCCTAAGTTAAGGTTGTTTGCGGGAGTTTTTGGCTCAGCGTTCCAGGTTGGACTTTTTAGTCTTGTTCCGCTTCGCAAGGTAATGGTTATGGATTACAAACTTACATACCCCAGTGGGACTGCCACAACAATGTTGATCAATAGCTTTCACACTAGAAGTGGTGCAGAGATTGCTGGGAAGCAAGTGCAATGTCTTGGAAAGTATCTAAGCATGAGTTTAATTTGGAGCTGCTTTAAGTGGTTCTTCAGTGGTATTGGAGATTCATGTGGGTTTGACAACTTTCCTAGCCTTGGATTGACACTTTTTAAGAACACGTTTTATTTCGACTCCAGTCCTACTTATGTCGGATGTGGTCTTATTTGCCCTCACATAGTCAACTGCTCAGTACTTCTTGGGGCTATCATATCATGGGGTTTCCTTTGGCCTCTCATATCCCAACATGCTGGGCACTGGTATCCAGCTGACCTTGGTAGCAATGATTTCAAAGGTCTTTATGGATATAAGGTCTTCATAGCTATTGCCCTTATTTTGGGGGATGGTCCATACAATTTGATCAAGATTATAGCCATTACTATCAAGGAAATATGCAATAAAAGTAGTAAACAGAACAATCTTCCTTTGGTTAAAGAAAAGTTGGATGGTGAGAGTTCTGAAGTAACCCTGGAACAAAAAAAGAGGGATGAGCAACTAGATGAAATCGATGTCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008308 GO:0008509 GO:0009605 GO:0009607 GO:0009617 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071944 GO:0098656

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

269

Amino Acids

30.0

Weight (kDa)

7.55

Isoelectric Point (pI)

36.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	49 - 233	2.6e-43	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	156
AciI	CCGC	2 cut(s)	119, 167
AcuI	CTGAAG	2 cut(s)	328, 771
AfaI	GTAC	1 cut(s)	486
AfiI	CCNNNNNNNGG	2 cut(s)	389, 628
AflIII	ACRYGT	1 cut(s)	411
AgsI	TTSAA	2 cut(s)	44, 583
AjnI	CCWGG	2 cut(s)	141, 759
AluBI	AGCT	4 cut(s)	243, 327, 560, 614
AluI	AGCT	4 cut(s)	243, 327, 560, 614
Alw26I	GTCTC	1 cut(s)	69
AoxI	GGCC	2 cut(s)	90, 521
ApeKI	GCWGC	1 cut(s)	327
AspS9I	GGNCC	2 cut(s)	90, 638
AsuHPI	GGTGA	2 cut(s)	37, 752
AvaII	GGWCC	1 cut(s)	638
BaeGI	GKGCMC	1 cut(s)	549
BbsI	GAAGAC	1 cut(s)	598
BbvI	GCAGC	1 cut(s)	314
BccI	CCATC	2 cut(s)	629, 731
BciT130I	CCWGG	2 cut(s)	143, 761
BciVI	GTATCC	1 cut(s)	564
BclI	TGATCA	2 cut(s)	234, 651
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	3 cut(s)	252, 384, 788
BfmI	CTRYAG	1 cut(s)	48
BfuI	GTATCC	1 cut(s)	564
BisI	GCNGC	1 cut(s)	328
BlpI	GCTNAGC	1 cut(s)	133
BlsI	GCNGC	1 cut(s)	329
BmcAI	AGTACT	1 cut(s)	486
Bme1390I	CCNGG	2 cut(s)	143, 761
Bme18I	GGWCC	1 cut(s)	638
BmgT120I	GGNCC	2 cut(s)	90, 638
BmrFI	CCNGG	2 cut(s)	143, 761
BmrI	ACTGGG	1 cut(s)	204
BmuI	ACTGGG	1 cut(s)	204
BoxI	GACNNNNGTC	1 cut(s)	429
BpiI	GAAGAC	1 cut(s)	598
BpmI	CTGGAG	1 cut(s)	412
Bpu1102I	GCTNAGC	1 cut(s)	133
BpuEI	CTTGAG	1 cut(s)	64
Bsa29I	ATCGAT	1 cut(s)	798
BsaJI	CCNNGG	3 cut(s)	388, 565, 759
Bsc4I	CCNNNNNNNGG	2 cut(s)	389, 628
Bse1I	ACTGG	3 cut(s)	210, 429, 554
Bse3DI	GCAATG	2 cut(s)	293, 580
BseBI	CCWGG	2 cut(s)	143, 761
BseCI	ATCGAT	1 cut(s)	798
BseDI	CCNNGG	3 cut(s)	388, 565, 759
BseGI	GGATG	4 cut(s)	452, 640, 742, 784
BseLI	CCNNNNNNNGG	2 cut(s)	389, 628
BseMI	GCAATG	2 cut(s)	293, 580
BseMII	CTCAG	2 cut(s)	147, 495
BseNI	ACTGG	3 cut(s)	210, 429, 554
BseSI	GKGCMC	1 cut(s)	549
BseXI	GCAGC	1 cut(s)	314
BseYI	CCCAGC	2 cut(s)	272, 542
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	92, 523
BshVI	ATCGAT	1 cut(s)	798
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	2 cut(s)	389, 628
BsmAI	GTCTC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	229
BsnI	GGCC	2 cut(s)	92, 523
Bsp1286I	GDGCHC	1 cut(s)	549
Bsp143I	GATC	2 cut(s)	234, 651
Bsp1720I	GCTNAGC	1 cut(s)	133
BspACI	CCGC	2 cut(s)	119, 167
BspANI	GGCC	2 cut(s)	92, 523
BspCNI	CTCAG	2 cut(s)	146, 494
BspDI	ATCGAT	1 cut(s)	798
BsrDI	GCAATG	2 cut(s)	293, 580
BsrI	ACTGG	3 cut(s)	210, 429, 554
BssECI	CCNNGG	3 cut(s)	388, 565, 759
BssMI	GATC	2 cut(s)	234, 651
BssT1I	CCWWGG	2 cut(s)	388, 565
Bst2UI	CCWGG	2 cut(s)	143, 761
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstDEI	CTNAG	4 cut(s)	102, 133, 305, 481
BstF5I	GGATG	4 cut(s)	452, 640, 742, 784
BstKTI	GATC	2 cut(s)	237, 654
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	2 cut(s)	234, 651
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	2 cut(s)	143, 761
BstNSI	RCATGY	1 cut(s)	542
BstPAI	GACNNNNGTC	1 cut(s)	429
BstSCI	CCNGG	2 cut(s)	141, 759
BstSFI	CTRYAG	1 cut(s)	48
BstSLI	GKGCMC	1 cut(s)	549
BstV1I	GCAGC	1 cut(s)	314
BstV2I	GAAGAC	1 cut(s)	598
BstXI	CCANNNNNNTGG	1 cut(s)	542
Bsu15I	ATCGAT	1 cut(s)	798
BsuI	GTATCC	1 cut(s)	564
BsuRI	GGCC	2 cut(s)	92, 523
BsuTUI	ATCGAT	1 cut(s)	798
BtsCI	GGATG	4 cut(s)	452, 640, 742, 784
BtsIMutI	CAGTG	3 cut(s)	217, 352, 547
Cfr13I	GGNCC	2 cut(s)	90, 638
ClaI	ATCGAT	1 cut(s)	798
Csp6I	GTAC	1 cut(s)	485
CviAII	CATG	4 cut(s)	310, 363, 507, 539
CviQI	GTAC	1 cut(s)	485
DdeI	CTNAG	4 cut(s)	102, 133, 305, 481
DpnI	GATC	2 cut(s)	236, 653
DpnII	GATC	2 cut(s)	234, 651
DrdI	GACNNNNNNGTC	1 cut(s)	156
DseDI	GACNNNNNNGTC	1 cut(s)	156
Eco130I	CCWWGG	2 cut(s)	388, 565
Eco32I	GATATC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	638
Eco57I	CTGAAG	2 cut(s)	328, 771
EcoRII	CCWGG	2 cut(s)	141, 759
EcoRV	GATATC	1 cut(s)	21
EcoT14I	CCWWGG	2 cut(s)	388, 565
ErhI	CCWWGG	2 cut(s)	388, 565
FaeI	CATG	4 cut(s)	313, 366, 510, 542
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	4 cut(s)	309, 362, 506, 538
FauI	CCCGC	1 cut(s)	112
FbaI	TGATCA	2 cut(s)	234, 651
Fnu4HI	GCNGC	1 cut(s)	328
FokI	GGATG	4 cut(s)	459, 647, 749, 791
Fsp4HI	GCNGC	1 cut(s)	328
FspBI	CTAG	3 cut(s)	252, 384, 788
GluI	GCNGC	1 cut(s)	328
GsaI	CCCAGC	2 cut(s)	276, 546
GsuI	CTGGAG	1 cut(s)	412
HaeIII	GGCC	2 cut(s)	92, 523
Hin1II	CATG	4 cut(s)	313, 366, 510, 542
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	3 cut(s)	77, 359, 425
HphI	GGTGA	2 cut(s)	37, 752
Hpy166II	GTNNAC	2 cut(s)	475, 701
Hpy188I	TCNGA	2 cut(s)	446, 751
Hpy188III	TCNNGA	1 cut(s)	655
Hpy8I	GTNNAC	2 cut(s)	475, 701
HpyCH4IV	ACGT	1 cut(s)	413
HpyCH4V	TGCA	3 cut(s)	263, 286, 687
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	4 cut(s)	102, 133, 305, 481
HpySE526I	ACGT	1 cut(s)	413
Hsp92II	CATG	4 cut(s)	313, 366, 510, 542
Ksp22I	TGATCA	2 cut(s)	234, 651
Kzo9I	GATC	2 cut(s)	234, 651
LmnI	GCTCC	2 cut(s)	4, 324
Lsp1109I	GCAGC	1 cut(s)	314
MaeI	CTAG	3 cut(s)	252, 384, 788
MaeII	ACGT	1 cut(s)	413
MaeIII	GTNAC	1 cut(s)	754
MalI	GATC	2 cut(s)	236, 653
MboI	GATC	2 cut(s)	234, 651
MboII	GAAGA	3 cut(s)	334, 598, 704
MhlI	GDGCHC	1 cut(s)	549
MluCI	AATT	2 cut(s)	318, 646
MlyI	GAGTC	2 cut(s)	71, 419
MmeI	TCCRAC	3 cut(s)	127, 424, 714
MnlI	CCTC	4 cut(s)	21, 474, 534, 768
MseI	TTAA	6 cut(s)	95, 107, 317, 333, 405, 723
MslI	CAYNNNNRTG	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	560
MspR9I	CCNGG	2 cut(s)	143, 761
MvaI	CCWGG	2 cut(s)	143, 761
MwoI	GCNNNNNNNGC	1 cut(s)	269
NdeII	GATC	2 cut(s)	234, 651
NlaIII	CATG	4 cut(s)	313, 366, 510, 542
NspI	RCATGY	1 cut(s)	542
PfeI	GAWTC	1 cut(s)	359
PkrI	GCNGC	1 cut(s)	329
PleI	GAGTC	2 cut(s)	71, 419
PpsI	GAGTC	2 cut(s)	71, 419
PshAI	GACNNNNGTC	1 cut(s)	429
Psp6I	CCWGG	2 cut(s)	141, 759
PspFI	CCCAGC	2 cut(s)	272, 542
PspGI	CCWGG	2 cut(s)	141, 759
PspPI	GGNCC	2 cut(s)	90, 638
PvuII	CAGCTG	1 cut(s)	560
RsaI	GTAC	1 cut(s)	486
RsaNI	GTAC	1 cut(s)	485
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	6 cut(s)	95, 107, 317, 333, 405, 723
SatI	GCNGC	1 cut(s)	328
Sau3AI	GATC	2 cut(s)	234, 651
Sau96I	GGNCC	2 cut(s)	90, 638
ScaI	AGTACT	1 cut(s)	486
SchI	GAGTC	2 cut(s)	71, 419
ScrFI	CCNGG	2 cut(s)	143, 761
SduI	GDGCHC	1 cut(s)	549
SfcI	CTRYAG	1 cut(s)	48
SinI	GGWCC	1 cut(s)	638
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
Sse9I	AATT	2 cut(s)	318, 646
SsiI	CCGC	2 cut(s)	119, 167
SspMI	CTAG	3 cut(s)	252, 384, 788
StyD4I	CCNGG	2 cut(s)	141, 759
StyI	CCWWGG	2 cut(s)	388, 565
TaiI	ACGT	1 cut(s)	416
TaqI	TCGA	2 cut(s)	423, 798
TasI	AATT	2 cut(s)	318, 646
TatI	WGTACW	1 cut(s)	484
TfiI	GAWTC	1 cut(s)	359
Tru1I	TTAA	6 cut(s)	95, 107, 317, 333, 405, 723
Tru9I	TTAA	6 cut(s)	95, 107, 317, 333, 405, 723
TscAI	CASTG	3 cut(s)	217, 352, 554
TseI	GCWGC	1 cut(s)	327
TspDTI	ATGAA	3 cut(s)	351, 598, 807
TspRI	CASTG	3 cut(s)	217, 352, 554
VpaK11BI	GGWCC	1 cut(s)	638
XceI	RCATGY	1 cut(s)	542
XspI	CTAG	3 cut(s)	252, 384, 788
ZrmI	AGTACT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.