Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Forward (+)

17279004 .. 17280722

Gene Structure 1719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G222400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGTCTAGTAATACTAAAAGCTTAAGTAGCACAAGTTGCAGCGAGGATGAAAGTGAGCTAAGGAGAGGGCCATGGACTCTTGAAGAAGACACTCTTCTGATTCAATACATAGCTCGTCATGGTGAAGGCCGATGGAATTTGCTAGCAAAACGTTCAGGGTTAAGGAGAACTGGCAAGAGTTGCAGACTGAGATGGTTGAATTATCTGAAACCGGATGTTAAGCGAGGAAATCTTAGTCCAGAAGAACAGCTCTTGATTCTTGACCTCCACTCAAAGTGGGGCAACAGGTGGTCAAAAATTGCGCAGTATTTACCGGGTAGAACGGACAACGAAATCAAGAACTACTGGAGAACAAGGGTGCAGAAACAAGCACGGCATCTTAAAGTTGACACCAACAGCACAGAATTCCAAAATATTATCAGGTGCTTTTGGATGCCAAGATTGCTGCAGAAGATAGGAGGAGAATCATCGTTTTCTTCCCCCATGTTAATCCAAAACCCGATGGCTTTGCAGCCTCTTGACAATGTTTCTCAGCATTTAACAGCAGCAACAGCATCACCTCCACAAATTCCTGGGCAGGGAGCTCTTAATATGAGTGGAACAATATACAATTTGGATAGCATCCAAAAGCAGAACGCAGAGTCAGTGTTCTGCACCAGTTCCTGCATTTTGCCTTCAGAACCAATAGACATGCCAAAGATGTCTCAAATTCCAGAATGCCCTCCTAGTCCTTTTCATGCCATACTTAACAATGATAATGCAAAGGGCGGCTTTTGTGTTGACGACAATAGCTATGACATAGAAGCCTTCAATCTGCAGGGGTCTGTTTCAGCACAAGGGTTTGCTGGAAACTCTGCTGGTGATTGCTATGTAGCAGAAAGCAACTGGCTTGACAGTGATTTTTCATGCGGCATGTGGAGCATGGACGAATTGTGGCAAAGTAGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

317

Amino Acids

35.55

Weight (kDa)

6.24

Isoelectric Point (pI)

73.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	303
AciI	CCGC	2 cut(s)	768, 909
AclI	AACGTT	1 cut(s)	151
AcsI	RAATTY	4 cut(s)	136, 404, 567, 708
AcuI	CTGAAG	1 cut(s)	660
AfiI	CCNNNNNNNGG	1 cut(s)	578
AflII	CTTAAG	1 cut(s)	22
AgsI	TTSAA	4 cut(s)	83, 104, 199, 811
AjnI	CCWGG	1 cut(s)	571
AluBI	AGCT	7 cut(s)	21, 58, 113, 250, 584, 792, 948
AluI	AGCT	7 cut(s)	21, 58, 113, 250, 584, 792, 948
Alw21I	GWGCWC	1 cut(s)	586
Alw26I	GTCTC	1 cut(s)	708
AlwNI	CAGNNNCTG	1 cut(s)	663
AoxI	GGCC	2 cut(s)	68, 127
ApeKI	GCWGC	4 cut(s)	39, 445, 511, 545
ApoI	RAATTY	4 cut(s)	136, 404, 567, 708
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	1 cut(s)	68
AsuC2I	CCSGG	1 cut(s)	315
AsuHPI	GGTGA	3 cut(s)	134, 549, 872
AsuNHI	GCTAGC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	586
BbsI	GAAGAC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	586
BbvI	GCAGC	4 cut(s)	51, 432, 523, 557
BccI	CCATC	3 cut(s)	126, 186, 496
BceAI	ACGGC	1 cut(s)	389
BcgI	CGANNNNNNTGC	2 cut(s)	490, 524
BciT130I	CCWGG	1 cut(s)	573
BcnI	CCSGG	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	708
BfaI	CTAG	3 cut(s)	6, 143, 726
BfmI	CTRYAG	2 cut(s)	446, 815
BfrI	CTTAAG	1 cut(s)	22
BisI	GCNGC	6 cut(s)	40, 446, 512, 546, 769, 910
BlsI	GCNGC	6 cut(s)	41, 447, 513, 547, 770, 911
Bme1390I	CCNGG	2 cut(s)	315, 573
BmgT120I	GGNCC	1 cut(s)	68
BmrFI	CCNGG	2 cut(s)	315, 573
BmsI	GCATC	4 cut(s)	385, 423, 563, 630
BmtI	GCTAGC	1 cut(s)	146
BpiI	GAAGAC	1 cut(s)	93
BpmI	CTGGAG	1 cut(s)	367
Bpu10I	CCTNAGC	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	71, 572
BsaWI	WCCGGW	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	1 cut(s)	578
Bse1I	ACTGG	4 cut(s)	175, 350, 657, 890
BseBI	CCWGG	1 cut(s)	573
BseDI	CCNNGG	2 cut(s)	71, 572
BseGI	GGATG	4 cut(s)	52, 220, 438, 621
BseLI	CCNNNNNNNGG	1 cut(s)	578
BseMII	CTCAG	2 cut(s)	179, 545
BseNI	ACTGG	4 cut(s)	175, 350, 657, 890
BseRI	GAGGAG	1 cut(s)	474
BseXI	GCAGC	4 cut(s)	51, 432, 523, 557
BsgI	GTGCAG	2 cut(s)	380, 637
BshFI	GGCC	2 cut(s)	70, 129
BsiHKAI	GWGCWC	1 cut(s)	586
BsiSI	CCGG	2 cut(s)	212, 314
BslI	CCNNNNNNNGG	1 cut(s)	578
BsmAI	GTCTC	1 cut(s)	708
BsmI	GAATGC	1 cut(s)	722
BsnI	GGCC	2 cut(s)	70, 129
Bsp1286I	GDGCHC	1 cut(s)	586
Bsp19I	CCATGG	1 cut(s)	71
BspACI	CCGC	2 cut(s)	768, 909
BspANI	GGCC	2 cut(s)	70, 129
BspCNI	CTCAG	2 cut(s)	180, 544
BspMAI	CTGCAG	2 cut(s)	450, 819
BspOI	GCTAGC	1 cut(s)	146
BspTI	CTTAAG	1 cut(s)	22
BsrI	ACTGG	4 cut(s)	175, 350, 657, 890
BssECI	CCNNGG	2 cut(s)	71, 572
BssT1I	CCWWGG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	573
Bst4CI	ACNGT	1 cut(s)	896
Bst6I	CTCTTC	1 cut(s)	99
BstAFI	CTTAAG	1 cut(s)	22
BstAPI	GCANNNNNTGC	2 cut(s)	36, 180
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	4 cut(s)	59, 188, 233, 531
BstDSI	CCRYGG	1 cut(s)	71
BstF5I	GGATG	4 cut(s)	52, 220, 438, 621
BstHHI	GCGC	1 cut(s)	304
BstMAI	GTCTC	1 cut(s)	708
BstMWI	GCNNNNNNNGC	6 cut(s)	27, 36, 180, 442, 551, 918
BstNI	CCWGG	1 cut(s)	573
BstNSI	RCATGY	2 cut(s)	694, 916
BstSCI	CCNGG	2 cut(s)	313, 571
BstSFI	CTRYAG	2 cut(s)	446, 815
BstV1I	GCAGC	4 cut(s)	51, 432, 523, 557
BstV2I	GAAGAC	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	70, 129
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	4 cut(s)	52, 220, 438, 621
BtsIMutI	CAGTG	2 cut(s)	651, 901
Cac8I	GCNNGC	1 cut(s)	144
CaiI	CAGNNNCTG	1 cut(s)	663
CfoI	GCGC	1 cut(s)	304
Cfr13I	GGNCC	1 cut(s)	68
CviAII	CATG	8 cut(s)	72, 119, 484, 691, 737, 906, 913, 922
DdeI	CTNAG	4 cut(s)	59, 188, 233, 531
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	584
Eco130I	CCWWGG	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	586
Eco53kI	GAGCTC	1 cut(s)	584
Eco57I	CTGAAG	1 cut(s)	660
EcoICRI	GAGCTC	1 cut(s)	584
EcoRI	GAATTC	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	571
EcoT14I	CCWWGG	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	586
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	8 cut(s)	75, 122, 487, 694, 740, 909, 916, 925
FalI	AAGNNNNNCTT	4 cut(s)	78, 110, 755, 787
FatI	CATG	8 cut(s)	71, 118, 483, 690, 736, 905, 912, 921
Fnu4HI	GCNGC	6 cut(s)	40, 446, 512, 546, 769, 910
FokI	GGATG	4 cut(s)	59, 227, 445, 608
FriOI	GRGCYC	1 cut(s)	586
Fsp4HI	GCNGC	6 cut(s)	40, 446, 512, 546, 769, 910
FspBI	CTAG	3 cut(s)	6, 143, 726
FspI	TGCGCA	1 cut(s)	303
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	6 cut(s)	40, 446, 512, 546, 769, 910
GsuI	CTGGAG	1 cut(s)	367
HaeIII	GGCC	2 cut(s)	70, 129
HapII	CCGG	2 cut(s)	212, 314
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	8 cut(s)	75, 122, 487, 694, 740, 909, 916, 925
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HincII	GTYRAC	2 cut(s)	388, 781
HindII	GTYRAC	2 cut(s)	388, 781
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	5 cut(s)	76, 100, 256, 464, 641
HpaII	CCGG	2 cut(s)	212, 314
HphI	GGTGA	3 cut(s)	134, 549, 872
Hpy166II	GTNNAC	2 cut(s)	388, 781
Hpy188I	TCNGA	3 cut(s)	99, 207, 679
Hpy188III	TCNNGA	7 cut(s)	80, 239, 253, 260, 337, 518, 713
Hpy8I	GTNNAC	2 cut(s)	388, 781
HpyAV	CCTTC	3 cut(s)	119, 684, 817
HpyCH4III	ACNGT	1 cut(s)	896
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	9 cut(s)	39, 183, 361, 448, 511, 654, 666, 761, 817
HpyF10VI	GCNNNNNNNGC	6 cut(s)	27, 36, 180, 442, 551, 918
HpyF3I	CTNAG	4 cut(s)	59, 188, 233, 531
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	8 cut(s)	75, 122, 487, 694, 740, 909, 916, 925
HspAI	GCGC	1 cut(s)	302
LmnI	GCTCC	3 cut(s)	581, 918, 945
Lsp1109I	GCAGC	4 cut(s)	51, 432, 523, 557
LweI	GCATC	4 cut(s)	385, 423, 563, 630
MaeI	CTAG	3 cut(s)	6, 143, 726
MaeII	ACGT	1 cut(s)	151
MboII	GAAGA	6 cut(s)	86, 95, 98, 254, 463, 468
MhlI	GDGCHC	1 cut(s)	586
MluCI	AATT	8 cut(s)	136, 199, 297, 404, 567, 610, 708, 929
MlyI	GAGTC	2 cut(s)	70, 650
MnlI	CCTC	8 cut(s)	37, 59, 218, 275, 452, 525, 570, 732
MseI	TTAA	8 cut(s)	23, 161, 219, 381, 488, 539, 588, 747
MspCI	CTTAAG	1 cut(s)	22
MspI	CCGG	2 cut(s)	212, 314
MspR9I	CCNGG	2 cut(s)	315, 573
Mva1269I	GAATGC	1 cut(s)	722
MvaI	CCWGG	1 cut(s)	573
MwoI	GCNNNNNNNGC	6 cut(s)	27, 36, 180, 442, 551, 918
NciI	CCSGG	1 cut(s)	315
NcoI	CCATGG	1 cut(s)	71
NheI	GCTAGC	1 cut(s)	142
NlaIII	CATG	8 cut(s)	75, 122, 487, 694, 740, 909, 916, 925
NsbI	TGCGCA	1 cut(s)	303
NspI	RCATGY	2 cut(s)	694, 916
PctI	GAATGC	1 cut(s)	722
PfeI	GAWTC	3 cut(s)	100, 256, 464
PkrI	GCNGC	6 cut(s)	41, 447, 513, 547, 770, 911
PleI	GAGTC	2 cut(s)	70, 649
PpsI	GAGTC	2 cut(s)	70, 649
Psp124BI	GAGCTC	1 cut(s)	586
Psp1406I	AACGTT	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	571
PspGI	CCWGG	1 cut(s)	571
PspPI	GGNCC	1 cut(s)	68
PstI	CTGCAG	2 cut(s)	450, 819
PstNI	CAGNNNCTG	1 cut(s)	663
SacI	GAGCTC	1 cut(s)	586
SaqAI	TTAA	8 cut(s)	23, 161, 219, 381, 488, 539, 588, 747
SatI	GCNGC	6 cut(s)	40, 446, 512, 546, 769, 910
Sau96I	GGNCC	1 cut(s)	68
SchI	GAGTC	2 cut(s)	70, 650
ScrFI	CCNGG	2 cut(s)	315, 573
SduI	GDGCHC	1 cut(s)	586
SfaNI	GCATC	4 cut(s)	385, 423, 563, 630
SfcI	CTRYAG	2 cut(s)	446, 815
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
Sse9I	AATT	8 cut(s)	136, 199, 297, 404, 567, 610, 708, 929
SsiI	CCGC	2 cut(s)	768, 909
SspI	AATATT	1 cut(s)	415
SspMI	CTAG	3 cut(s)	6, 143, 726
SstI	GAGCTC	1 cut(s)	586
StyD4I	CCNGG	2 cut(s)	313, 571
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	1 cut(s)	896
TaiI	ACGT	1 cut(s)	154
TasI	AATT	8 cut(s)	136, 199, 297, 404, 567, 610, 708, 929
TauI	GCSGC	2 cut(s)	771, 912
TfiI	GAWTC	3 cut(s)	100, 256, 464
Tru1I	TTAA	8 cut(s)	23, 161, 219, 381, 488, 539, 588, 747
Tru9I	TTAA	8 cut(s)	23, 161, 219, 381, 488, 539, 588, 747
TscAI	CASTG	2 cut(s)	651, 901
TseI	GCWGC	4 cut(s)	39, 445, 511, 545
TspDTI	ATGAA	3 cut(s)	63, 725, 894
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	2 cut(s)	651, 901
Vha464I	CTTAAG	1 cut(s)	22
XapI	RAATTY	4 cut(s)	136, 404, 567, 708
XceI	RCATGY	2 cut(s)	694, 916
XspI	CTAG	3 cut(s)	6, 143, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.