Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Reverse (-)

5153976 .. 5156231

Gene Structure 2256 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG072200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCAGTCAATCTTTGATTTGGAGAACACAAACCAAGAGCTGAAAAGTGACTTGAAGGACTTGTACATTAACTCTGCAGCTCTCGTTGATGTTGCTGGAAATCGGAAGGCTGTTGTTATCCATGTTCCTTATAGACTGAGGAAGGCTTACCGCAAGATCCATGTTAGGCTTGTGAGGGAGCTTGAGAAGAAGTTCAGTGGAAAGGATGTGATTCTGATTGCCACACGTAGGATTGTGAGGCCGCCAAAGAAAGGCTCTGCTGCTCAACGTCCACGCACTCGCACCCTGACTGCTGTTCATGAAGCAATATTGGAGGATGTTGTTTTGCCTGCTGAAATTGTTGGCAAGCGCACCAGATATCGCCTTGATGGTTCCAAGATCATGAAGGTAAGCTATCATGATTTACTGAAGCACAAAATATTGTACTCTGGTGGTAGACACACTGAAAGGAATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7e

Protein Analysis

152

Amino Acids

17.49

Weight (kDa)

10.36

Isoelectric Point (pI)

28.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7e	PF01251	2 - 133	7.2e-56	Ribosomal protein S7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	436
AciI	CCGC	2 cut(s)	151, 242
AclWI	GGATC	1 cut(s)	151
AcuI	CTGAAG	1 cut(s)	428
AfaI	GTAC	2 cut(s)	65, 425
AfiI	CCNNNNNNNGG	2 cut(s)	228, 251
AflIII	ACRYGT	1 cut(s)	224
AgsI	TTSAA	1 cut(s)	55
AluBI	AGCT	4 cut(s)	40, 80, 181, 393
AluI	AGCT	4 cut(s)	40, 80, 181, 393
AlwI	GGATC	1 cut(s)	151
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	2 cut(s)	77, 260
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	351
BarI	GAAGNNNNNNTAC	2 cut(s)	47, 79
BbvI	GCAGC	2 cut(s)	89, 247
BccI	CCATC	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	75
BisI	GCNGC	3 cut(s)	78, 242, 261
BlsI	GCNGC	3 cut(s)	79, 243, 262
BmiI	GGNNCC	1 cut(s)	373
BpuEI	CTTGAG	1 cut(s)	203
BsaAI	YACGTR	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 251
BseGI	GGATG	2 cut(s)	211, 322
BseLI	CCNNNNNNNGG	2 cut(s)	228, 251
BseMII	CTCAG	1 cut(s)	128
BseXI	GCAGC	2 cut(s)	89, 247
BshFI	GGCC	1 cut(s)	241
BslI	CCNNNNNNNGG	2 cut(s)	228, 251
BsnI	GGCC	1 cut(s)	241
Bsp1407I	TGTACA	1 cut(s)	63
Bsp143I	GATC	2 cut(s)	156, 378
BspACI	CCGC	2 cut(s)	151, 242
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	1 cut(s)	129
BspHI	TCATGA	3 cut(s)	298, 381, 397
BspLI	GGNNCC	1 cut(s)	373
BspMAI	CTGCAG	1 cut(s)	79
BspPI	GGATC	1 cut(s)	151
BsrGI	TGTACA	1 cut(s)	63
BssMI	GATC	2 cut(s)	156, 378
BstAUI	TGTACA	1 cut(s)	63
BstBAI	YACGTR	1 cut(s)	227
BstC8I	GCNNGC	2 cut(s)	330, 347
BstDEI	CTNAG	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	211, 322
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	2 cut(s)	159, 381
BstMBI	GATC	2 cut(s)	156, 378
BstSFI	CTRYAG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	89, 247
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	241
BtsCI	GGATG	2 cut(s)	211, 322
BtsIMutI	CAGTG	2 cut(s)	202, 441
Cac8I	GCNNGC	2 cut(s)	330, 347
CciI	TCATGA	3 cut(s)	298, 381, 397
CfoI	GCGC	1 cut(s)	351
Csp6I	GTAC	2 cut(s)	64, 424
CviAII	CATG	5 cut(s)	122, 161, 299, 382, 398
CviJI	RGCY	9 cut(s)	40, 80, 110, 146, 169, 181, 241, 255, 393
CviKI_1	RGCY	9 cut(s)	40, 80, 110, 146, 169, 181, 241, 255, 393
CviQI	GTAC	2 cut(s)	64, 424
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	2 cut(s)	158, 380
DpnII	GATC	2 cut(s)	156, 378
Eco32I	GATATC	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	428
EcoRV	GATATC	1 cut(s)	359
FaeI	CATG	5 cut(s)	125, 164, 302, 385, 401
FaiI	YATR	6 cut(s)	123, 132, 162, 300, 383, 399
FatI	CATG	5 cut(s)	121, 160, 298, 381, 397
FblI	GTMKAC	1 cut(s)	436
Fnu4HI	GCNGC	3 cut(s)	78, 242, 261
FokI	GGATG	2 cut(s)	218, 329
Fsp4HI	GCNGC	3 cut(s)	78, 242, 261
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	3 cut(s)	78, 242, 261
HaeIII	GGCC	1 cut(s)	241
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	5 cut(s)	125, 164, 302, 385, 401
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HinfI	GANTC	1 cut(s)	211
Hpy166II	GTNNAC	2 cut(s)	272, 437
Hpy188I	TCNGA	2 cut(s)	105, 216
Hpy188III	TCNNGA	3 cut(s)	299, 382, 398
Hpy8I	GTNNAC	2 cut(s)	272, 437
HpyAV	CCTTC	4 cut(s)	49, 100, 136, 379
HpyCH4IV	ACGT	2 cut(s)	226, 268
HpyCH4V	TGCA	2 cut(s)	4, 77
HpyF3I	CTNAG	1 cut(s)	137
HpySE526I	ACGT	2 cut(s)	226, 268
Hsp92II	CATG	5 cut(s)	125, 164, 302, 385, 401
HspAI	GCGC	1 cut(s)	349
Kzo9I	GATC	2 cut(s)	156, 378
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	5 cut(s)	81, 299, 342, 367, 414
Lsp1109I	GCAGC	2 cut(s)	89, 247
MaeII	ACGT	2 cut(s)	226, 268
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	2 cut(s)	158, 380
MboI	GATC	2 cut(s)	156, 378
MboII	GAAGA	1 cut(s)	199
MflI	RGATCY	1 cut(s)	156
MluCI	AATT	2 cut(s)	336, 454
MnlI	CCTC	4 cut(s)	132, 168, 231, 307
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	1 cut(s)	69
NdeII	GATC	2 cut(s)	156, 378
NlaIII	CATG	5 cut(s)	125, 164, 302, 385, 401
NlaIV	GGNNCC	1 cut(s)	373
NmuCI	GTSAC	1 cut(s)	47
PagI	TCATGA	3 cut(s)	298, 381, 397
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	211
PkrI	GCNGC	3 cut(s)	79, 243, 262
Ppu21I	YACGTR	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	373
PstI	CTGCAG	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	156
RsaI	GTAC	2 cut(s)	65, 425
RsaNI	GTAC	2 cut(s)	64, 424
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	3 cut(s)	78, 242, 261
Sau3AI	GATC	2 cut(s)	156, 378
SetI	ASST	7 cut(s)	42, 82, 183, 229, 271, 390, 395
SfcI	CTRYAG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	336, 454
SsiI	CCGC	2 cut(s)	151, 242
SspI	AATATT	2 cut(s)	309, 420
TaiI	ACGT	2 cut(s)	229, 271
TasI	AATT	2 cut(s)	336, 454
TatI	WGTACW	2 cut(s)	63, 423
TauI	GCSGC	1 cut(s)	244
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	2 cut(s)	202, 448
TseFI	GTSAC	1 cut(s)	47
TseI	GCWGC	2 cut(s)	77, 260
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	3 cut(s)	287, 315, 398
TspRI	CASTG	2 cut(s)	202, 448
XmiI	GTMKAC	1 cut(s)	436
XmnI	GAANNNNTTC	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.