Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Forward (+)

20436639 .. 20437837

Gene Structure 1199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g18900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGTCGACTAAGACTAAAACCCTAAGTAGCAGTAGTTCCGGAGAAGACGATGGTGAGCTTAGGAGAGGGCCATGGACTCTTGAAGAAGACTCTCTTCTTATTCAGTACATAACTCGTCACGGCGAAGGCCGATGGAACTTGCTAGCCAAACGTTCAGGATTAAGGAGAACTGGCAAAAGTTGCAGATTGAGATGGTTGAATTATCTGAAACCTGACGTTAAGCGAGGAAATCTTAGCCCTGAAGAACAGCTCTTGATTCTTGACCTCCACTCAAAAATGGGAAACAAGTGGTCGAAAATCGCGCAATATTTACCGGGAAGAACAGACAATGAAATCAAGAACTACTGGAGAACAAGGGTGCAGAAACAAGCCCGGCATCTCCGAATCGACACGAGCAGCGTAGAGTTTCAAAACATGATAAGGTGCTTTTGGATGCCAAGGTTGCAGCAGAAGATAGGAGGAGGAACATCGATTTCTTCAGCTGTGTTAAACCAAAACCATGCCATTTCGCAGCCTCTCGAAGACAACACCTTCCCACATTTTACAGCAACAATATCGCCGACACCACAAAATATAGTGCAGGAAGAAATTAATATGAGTGCATCAATGTACAATTTAGATGTCGAAAAGCAGAACATAAAGGCAGAGTACTGCACAGGTCCTTACATTTTTCCTTCAGAGCCAATGGACATGTCGAAGACTGTGCAGTTTCCGGAATGTCCTCCTTTCCATTGTGGTGACAACAATGGCTATGACACGGAATCCTTCAATCTGCAGGAAACTGTGTCAGCGGACTCAGCACCAAATTTTCCAGGAAATTCTGCCGGCGATTGCTACGTGGCAGAAACCAACTGGTTTGACAGTGATGTTTTGTGTGGCATATGGAACGCGGACGAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

301

Amino Acids

34.14

Weight (kDa)

5.75

Isoelectric Point (pI)

65.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	22 - 69	1.1e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	25 - 82	5e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	75 - 118	7e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	79 - 123	1.3e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	2 cut(s)	302, 890
AccIII	TCCGGA	2 cut(s)	38, 712
AciI	CCGC	2 cut(s)	791, 890
AclI	AACGTT	1 cut(s)	151
AcsI	RAATTY	2 cut(s)	805, 817
AcuI	CTGAAG	3 cut(s)	261, 462, 660
AfaI	GTAC	3 cut(s)	107, 611, 650
AflIII	ACRYGT	1 cut(s)	690
AgsI	TTSAA	4 cut(s)	83, 199, 410, 769
AjnI	CCWGG	1 cut(s)	811
AluBI	AGCT	3 cut(s)	58, 250, 482
AluI	AGCT	3 cut(s)	58, 250, 482
Aor13HI	TCCGGA	2 cut(s)	38, 712
AoxI	GGCC	2 cut(s)	68, 127
ApeKI	GCWGC	3 cut(s)	396, 445, 511
ApoI	RAATTY	2 cut(s)	805, 817
AseI	ATTAAT	1 cut(s)	591
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	2 cut(s)	68, 659
AsuC2I	CCSGG	2 cut(s)	315, 373
AsuHPI	GGTGA	2 cut(s)	65, 749
AsuNHI	GCTAGC	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	659
BauI	CACGAG	1 cut(s)	391
BbsI	GAAGAC	4 cut(s)	51, 93, 528, 704
BbvI	GCAGC	3 cut(s)	408, 457, 523
BccI	CCATC	3 cut(s)	44, 126, 186
BceAI	ACGGC	1 cut(s)	136
BcgI	CGANNNNNNTGC	4 cut(s)	537, 571, 685, 719
BciT130I	CCWGG	1 cut(s)	813
BcnI	CCSGG	2 cut(s)	315, 373
BfaI	CTAG	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	773
BisI	GCNGC	3 cut(s)	397, 446, 512
BlsI	GCNGC	3 cut(s)	398, 447, 513
BmcAI	AGTACT	1 cut(s)	650
Bme1390I	CCNGG	3 cut(s)	315, 373, 813
Bme18I	GGWCC	1 cut(s)	659
BmgT120I	GGNCC	2 cut(s)	68, 659
BmrFI	CCNGG	3 cut(s)	315, 373, 813
BmsI	GCATC	3 cut(s)	385, 423, 611
BmtI	GCTAGC	1 cut(s)	146
BpiI	GAAGAC	4 cut(s)	51, 93, 528, 704
BpmI	CTGGAG	1 cut(s)	367
Bpu10I	CCTNAGC	1 cut(s)	59
BpuMI	CCSGG	2 cut(s)	315, 373
Bsa29I	ATCGAT	1 cut(s)	470
BsaAI	YACGTR	1 cut(s)	838
BsaJI	CCNNGG	2 cut(s)	71, 437
BsaWI	WCCGGW	2 cut(s)	38, 712
Bse118I	RCCGGY	1 cut(s)	824
Bse1I	ACTGG	3 cut(s)	175, 350, 857
BseAI	TCCGGA	2 cut(s)	38, 712
BseBI	CCWGG	1 cut(s)	813
BseCI	ATCGAT	1 cut(s)	470
BseDI	CCNNGG	2 cut(s)	71, 437
BseGI	GGATG	1 cut(s)	438
BseMII	CTCAG	1 cut(s)	810
BseNI	ACTGG	3 cut(s)	175, 350, 857
BseRI	GAGGAG	1 cut(s)	474
BseXI	GCAGC	3 cut(s)	408, 457, 523
BsgI	GTGCAG	4 cut(s)	380, 599, 637, 725
Bsh1236I	CGCG	2 cut(s)	302, 890
BshFI	GGCC	2 cut(s)	70, 129
BshVI	ATCGAT	1 cut(s)	470
BsiSI	CCGG	5 cut(s)	39, 314, 373, 713, 825
BsnI	GGCC	2 cut(s)	70, 129
Bsp13I	TCCGGA	2 cut(s)	38, 712
Bsp1407I	TGTACA	1 cut(s)	609
Bsp19I	CCATGG	1 cut(s)	71
BspACI	CCGC	2 cut(s)	791, 890
BspANI	GGCC	2 cut(s)	70, 129
BspCNI	CTCAG	1 cut(s)	809
BspDI	ATCGAT	1 cut(s)	470
BspEI	TCCGGA	2 cut(s)	38, 712
BspFNI	CGCG	2 cut(s)	302, 890
BspMAI	CTGCAG	1 cut(s)	777
BspOI	GCTAGC	1 cut(s)	146
BsrFI	RCCGGY	1 cut(s)	824
BsrGI	TGTACA	1 cut(s)	609
BsrI	ACTGG	3 cut(s)	175, 350, 857
BssAI	RCCGGY	1 cut(s)	824
BssECI	CCNNGG	2 cut(s)	71, 437
BssSI	CACGAG	1 cut(s)	391
BssT1I	CCWWGG	2 cut(s)	71, 437
Bst2BI	CACGAG	1 cut(s)	391
Bst2UI	CCWGG	1 cut(s)	813
Bst4CI	ACNGT	3 cut(s)	703, 784, 863
Bst6I	CTCTTC	1 cut(s)	99
BstAPI	GCANNNNNTGC	1 cut(s)	180
BstAUI	TGTACA	1 cut(s)	609
BstBAI	YACGTR	1 cut(s)	838
BstC8I	GCNNGC	2 cut(s)	144, 826
BstDEI	CTNAG	5 cut(s)	9, 23, 59, 233, 796
BstDSI	CCRYGG	1 cut(s)	71
BstF5I	GGATG	1 cut(s)	438
BstFNI	CGCG	2 cut(s)	302, 890
BstHHI	GCGC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	3 cut(s)	180, 442, 797
BstNI	CCWGG	1 cut(s)	813
BstNSI	RCATGY	1 cut(s)	694
BstSCI	CCNGG	3 cut(s)	313, 371, 811
BstSFI	CTRYAG	1 cut(s)	773
BstUI	CGCG	2 cut(s)	302, 890
BstV1I	GCAGC	3 cut(s)	408, 457, 523
BstV2I	GAAGAC	4 cut(s)	51, 93, 528, 704
Bsu15I	ATCGAT	1 cut(s)	470
BsuRI	GGCC	2 cut(s)	70, 129
BsuTUI	ATCGAT	1 cut(s)	470
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	438
BtsIMutI	CAGTG	1 cut(s)	868
Cac8I	GCNNGC	2 cut(s)	144, 826
CfoI	GCGC	1 cut(s)	304
Cfr10I	RCCGGY	1 cut(s)	824
Cfr13I	GGNCC	2 cut(s)	68, 659
ClaI	ATCGAT	1 cut(s)	470
Csp6I	GTAC	3 cut(s)	106, 610, 649
CviAII	CATG	4 cut(s)	72, 415, 500, 691
CviQI	GTAC	3 cut(s)	106, 610, 649
DdeI	CTNAG	5 cut(s)	9, 23, 59, 233, 796
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Eco130I	CCWWGG	2 cut(s)	71, 437
Eco47I	GGWCC	1 cut(s)	659
Eco57I	CTGAAG	3 cut(s)	261, 462, 660
EcoO109I	RGGNCCY	1 cut(s)	659
EcoRII	CCWGG	1 cut(s)	811
EcoT14I	CCWWGG	2 cut(s)	71, 437
ErhI	CCWWGG	2 cut(s)	71, 437
FaeI	CATG	4 cut(s)	75, 418, 503, 694
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FatI	CATG	4 cut(s)	71, 414, 499, 690
FauNDI	CATATG	1 cut(s)	881
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	397, 446, 512
FokI	GGATG	1 cut(s)	445
Fsp4HI	GCNGC	3 cut(s)	397, 446, 512
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	3 cut(s)	397, 446, 512
GsuI	CTGGAG	1 cut(s)	367
HaeIII	GGCC	2 cut(s)	70, 129
HapII	CCGG	5 cut(s)	39, 314, 373, 713, 825
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	4 cut(s)	75, 418, 503, 694
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	6 cut(s)	76, 89, 256, 384, 761, 794
HpaII	CCGG	5 cut(s)	39, 314, 373, 713, 825
HphI	GGTGA	2 cut(s)	65, 749
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	207, 383, 679
Hpy188III	TCNNGA	8 cut(s)	39, 80, 156, 253, 260, 337, 518, 713
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	4 cut(s)	119, 541, 684, 775
HpyCH4III	ACNGT	3 cut(s)	703, 784, 863
HpyCH4IV	ACGT	3 cut(s)	151, 216, 837
HpyCH4V	TGCA	8 cut(s)	183, 361, 445, 580, 602, 654, 706, 775
HpyF10VI	GCNNNNNNNGC	3 cut(s)	180, 442, 797
HpyF3I	CTNAG	5 cut(s)	9, 23, 59, 233, 796
HpySE526I	ACGT	3 cut(s)	151, 216, 837
Hsp92II	CATG	4 cut(s)	75, 418, 503, 694
HspAI	GCGC	1 cut(s)	302
Kpn2I	TCCGGA	2 cut(s)	38, 712
KroI	GCCGGC	1 cut(s)	824
KroNI	GCCGGC	1 cut(s)	826
Lsp1109I	GCAGC	3 cut(s)	408, 457, 523
LweI	GCATC	3 cut(s)	385, 423, 611
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	3 cut(s)	151, 216, 837
MaeIII	GTNAC	2 cut(s)	116, 737
MluCI	AATT	5 cut(s)	199, 588, 613, 805, 817
MlyI	GAGTC	3 cut(s)	70, 83, 788
MnlI	CCTC	7 cut(s)	59, 218, 275, 452, 455, 525, 732
MroI	TCCGGA	2 cut(s)	38, 712
MroNI	GCCGGC	1 cut(s)	824
MseI	TTAA	4 cut(s)	161, 219, 488, 591
MslI	CAYNNNNRTG	1 cut(s)	735
MspA1I	CMGCKG	2 cut(s)	482, 791
MspI	CCGG	5 cut(s)	39, 314, 373, 713, 825
MspR9I	CCNGG	3 cut(s)	315, 373, 813
MvaI	CCWGG	1 cut(s)	813
MvnI	CGCG	2 cut(s)	302, 890
MwoI	GCNNNNNNNGC	3 cut(s)	180, 442, 797
NaeI	GCCGGC	1 cut(s)	826
NciI	CCSGG	2 cut(s)	315, 373
NcoI	CCATGG	1 cut(s)	71
NdeI	CATATG	1 cut(s)	881
NgoMIV	GCCGGC	1 cut(s)	824
NheI	GCTAGC	1 cut(s)	142
NlaIII	CATG	4 cut(s)	75, 418, 503, 694
NmuCI	GTSAC	2 cut(s)	116, 737
NspI	RCATGY	1 cut(s)	694
PciI	ACATGT	1 cut(s)	690
PdiI	GCCGGC	1 cut(s)	826
PfeI	GAWTC	3 cut(s)	256, 384, 761
PfoI	TCCNGGA	1 cut(s)	811
PkrI	GCNGC	3 cut(s)	398, 447, 513
PleI	GAGTC	3 cut(s)	70, 83, 788
PpsI	GAGTC	3 cut(s)	70, 83, 788
Ppu21I	YACGTR	1 cut(s)	838
PpuMI	RGGWCCY	1 cut(s)	659
PscI	ACATGT	1 cut(s)	690
PshBI	ATTAAT	1 cut(s)	591
Psp1406I	AACGTT	1 cut(s)	151
Psp5II	RGGWCCY	1 cut(s)	659
Psp6I	CCWGG	1 cut(s)	811
PspGI	CCWGG	1 cut(s)	811
PspPI	GGNCC	2 cut(s)	68, 659
PspPPI	RGGWCCY	1 cut(s)	659
PsrI	GAACNNNNNNTAC	2 cut(s)	19, 51
PstI	CTGCAG	1 cut(s)	777
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	3 cut(s)	107, 611, 650
RsaNI	GTAC	3 cut(s)	106, 610, 649
RseI	CAYNNNNRTG	1 cut(s)	735
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	4 cut(s)	161, 219, 488, 591
SatI	GCNGC	3 cut(s)	397, 446, 512
Sau96I	GGNCC	2 cut(s)	68, 659
ScaI	AGTACT	1 cut(s)	650
SchI	GAGTC	3 cut(s)	70, 83, 788
ScrFI	CCNGG	3 cut(s)	315, 373, 813
SfaNI	GCATC	3 cut(s)	385, 423, 611
SfcI	CTRYAG	1 cut(s)	773
SinI	GGWCC	1 cut(s)	659
SmiMI	CAYNNNNRTG	1 cut(s)	735
Sse9I	AATT	5 cut(s)	199, 588, 613, 805, 817
SsiI	CCGC	2 cut(s)	791, 890
SspI	AATATT	1 cut(s)	308
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	3 cut(s)	313, 371, 811
StyI	CCWWGG	2 cut(s)	71, 437
TaaI	ACNGT	3 cut(s)	703, 784, 863
TaiI	ACGT	3 cut(s)	154, 219, 840
TaqI	TCGA	7 cut(s)	5, 293, 387, 470, 519, 624, 695
TasI	AATT	5 cut(s)	199, 588, 613, 805, 817
TatI	WGTACW	3 cut(s)	105, 609, 648
TfiI	GAWTC	3 cut(s)	256, 384, 761
Tru1I	TTAA	4 cut(s)	161, 219, 488, 591
Tru9I	TTAA	4 cut(s)	161, 219, 488, 591
TscAI	CASTG	1 cut(s)	868
TseFI	GTSAC	2 cut(s)	116, 737
TseI	GCWGC	3 cut(s)	396, 445, 511
Tsp45I	GTSAC	2 cut(s)	116, 737
TspDTI	ATGAA	1 cut(s)	345
TspGWI	ACGGA	1 cut(s)	773
TspRI	CASTG	1 cut(s)	868
VpaK11BI	GGWCC	1 cut(s)	659
VspI	ATTAAT	1 cut(s)	591
XapI	RAATTY	2 cut(s)	805, 817
XceI	RCATGY	1 cut(s)	694
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	143
ZrmI	AGTACT	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.