Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Forward (+)

5848159 .. 5850092

Gene Structure 1934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG075300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTCTTCTAATACCAAAAGCTTCAGCAGCAGTTCCAGTGAAGATGACAATGAACTTAGGAGAGGGCCATGGACTCTTGAAGAAGACACTCTTCTGATTCAATACATAGCTCGTCACGGTGAAGGCCGATGGAATCTGCTAGCAAATCGGGCAGGATTACGGAGAACTGGGAAGAGTTGCAGATTGAGATGGTTGAACTATCTGAAACCAGATGTTAAGCGCGGAAATCTTACTCCGGAAGAACAGCTGTTGATTCTTGACCTCCACTCCAAGTGGGGAAATAGGTGGTCGAAAATTGCGCAATACTTACCCGGAAGAACAGACAATGAAATCAAGAACTACTGGAGAACTAGAGTGCAGAAACAAGCAAAGCATCTTAAAATTGATACCGACAGCACAGAGTTTCAGAATATTATTAGGTGCTTTTGGATGCCTAGATTGCTGCAGAAGATAGGAGACCAAAACCAATTAGCTGCTTCTCATCAGCATTCAATAACAGCACCACCATCACAGCCACAATTTACTGAGCAAGGAGCTGTTGACATGAGCGGATTTGTATACGATTTGGATATCAAAAAGCAGAACACAGAATGCATTTTGCCTTCAGAGTTACCAATGGAGAGCTCAAACACTTCTCAATTTTCAGAATATTACCCTTCTAGTTCTTTTGGTGGAGCCATAGTGCGCAATGATCACTTTGTAAACAACAATAGCCATGACATGGAAGTCTTCAACTTGGGGAATTCTGCTGCTGCTGATACTTGCTATGTGCCAGAAAGCGAAAGCAACTGGCTTGAAATTGATTTTTCATGTAGCATGTGGAACATGGATGAATTGTTGCAGAGGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

283

Amino Acids

32.65

Weight (kDa)

5.84

Isoelectric Point (pI)

59.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	21 - 68	1.8e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	24 - 81	1.1e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	74 - 117	1.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	78 - 125	7.3e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	725
Acc16I	TGCGCA	2 cut(s)	300, 686
AccB7I	CCANNNNNTGG	1 cut(s)	721
AccBSI	CCGCTC	1 cut(s)	549
AccI	GTMKAC	1 cut(s)	558
AccII	CGCG	1 cut(s)	222
AccIII	TCCGGA	1 cut(s)	235
AciI	CCGC	2 cut(s)	222, 549
AcsI	RAATTY	1 cut(s)	742
AcuI	CTGAAG	2 cut(s)	7, 588
AfiI	CCNNNNNNNGG	1 cut(s)	721
AgsI	TTSAA	6 cut(s)	80, 101, 196, 492, 733, 797
AluBI	AGCT	6 cut(s)	21, 110, 247, 473, 536, 624
AluI	AGCT	6 cut(s)	21, 110, 247, 473, 536, 624
Alw21I	GWGCWC	1 cut(s)	626
Alw26I	GTCTC	1 cut(s)	450
Aor13HI	TCCGGA	1 cut(s)	235
AoxI	GGCC	2 cut(s)	65, 124
ApeKI	GCWGC	5 cut(s)	27, 442, 473, 749, 752
ApoI	RAATTY	1 cut(s)	742
AspLEI	GCGC	3 cut(s)	222, 301, 687
AspS9I	GGNCC	1 cut(s)	65
AsuC2I	CCSGG	1 cut(s)	312
AsuHPI	GGTGA	1 cut(s)	131
AsuNHI	GCTAGC	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	626
BbsI	GAAGAC	2 cut(s)	90, 721
Bbv12I	GWGCWC	1 cut(s)	626
BbvI	GCAGC	5 cut(s)	39, 429, 460, 736, 739
BccI	CCATC	3 cut(s)	123, 183, 514
BclI	TGATCA	1 cut(s)	691
BcnI	CCSGG	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	450
BfaI	CTAG	4 cut(s)	140, 351, 435, 660
BfmI	CTRYAG	1 cut(s)	443
BisI	GCNGC	5 cut(s)	28, 443, 474, 750, 753
BlsI	GCNGC	5 cut(s)	29, 444, 475, 751, 754
Bme1390I	CCNGG	1 cut(s)	312
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	1 cut(s)	676
BmrFI	CCNGG	1 cut(s)	312
BmrI	ACTGGG	1 cut(s)	177
BmsI	GCATC	2 cut(s)	382, 420
BmtI	GCTAGC	1 cut(s)	143
BmuI	ACTGGG	1 cut(s)	177
BpiI	GAAGAC	2 cut(s)	90, 721
BpmI	CTGGAG	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	68
BsaWI	WCCGGW	1 cut(s)	235
BsaXI	ACNNNNNCTCC	4 cut(s)	251, 281, 666, 696
Bsc4I	CCNNNNNNNGG	1 cut(s)	721
Bse1I	ACTGG	4 cut(s)	36, 172, 347, 794
Bse3DI	GCAATG	1 cut(s)	694
BseAI	TCCGGA	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	2 cut(s)	435, 835
BseLI	CCNNNNNNNGG	1 cut(s)	721
BseMI	GCAATG	1 cut(s)	694
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	4 cut(s)	36, 172, 347, 794
BseXI	GCAGC	5 cut(s)	39, 429, 460, 736, 739
BsgI	GTGCAG	1 cut(s)	377
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	2 cut(s)	67, 126
BsiHKAI	GWGCWC	1 cut(s)	626
BsiSI	CCGG	2 cut(s)	236, 312
BslI	CCNNNNNNNGG	1 cut(s)	721
BsmAI	GTCTC	1 cut(s)	450
BsmI	GAATGC	2 cut(s)	487, 596
BsnI	GGCC	2 cut(s)	67, 126
Bso31I	GGTCTC	1 cut(s)	450
Bsp1286I	GDGCHC	1 cut(s)	626
Bsp13I	TCCGGA	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	691
Bsp19I	CCATGG	1 cut(s)	68
BspACI	CCGC	2 cut(s)	222, 549
BspANI	GGCC	2 cut(s)	67, 126
BspCNI	CTCAG	1 cut(s)	517
BspEI	TCCGGA	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	676
BspMAI	CTGCAG	1 cut(s)	447
BspOI	GCTAGC	1 cut(s)	143
BspTNI	GGTCTC	1 cut(s)	450
BsrBI	CCGCTC	1 cut(s)	549
BsrDI	GCAATG	1 cut(s)	694
BsrI	ACTGG	4 cut(s)	36, 172, 347, 794
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	1 cut(s)	691
BssNAI	GTATAC	1 cut(s)	559
BssT1I	CCWWGG	1 cut(s)	68
Bst1107I	GTATAC	1 cut(s)	559
Bst4CI	ACNGT	1 cut(s)	119
Bst6I	CTCTTC	2 cut(s)	96, 167
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	2 cut(s)	56, 525
BstDSI	CCRYGG	1 cut(s)	68
BstF5I	GGATG	2 cut(s)	435, 835
BstFNI	CGCG	1 cut(s)	222
BstHHI	GCGC	3 cut(s)	222, 301, 687
BstKTI	GATC	1 cut(s)	694
BstMAI	GTCTC	1 cut(s)	450
BstMBI	GATC	1 cut(s)	691
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 149, 439
BstNSI	RCATGY	1 cut(s)	820
BstSCI	CCNGG	1 cut(s)	310
BstSFI	CTRYAG	1 cut(s)	443
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	5 cut(s)	39, 429, 460, 736, 739
BstV2I	GAAGAC	2 cut(s)	90, 721
BstZ17I	GTATAC	1 cut(s)	559
BsuRI	GGCC	2 cut(s)	67, 126
BtgI	CCRYGG	1 cut(s)	68
BtsCI	GGATG	2 cut(s)	435, 835
BtsIMutI	CAGTG	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	141
CfoI	GCGC	3 cut(s)	222, 301, 687
Cfr13I	GGNCC	1 cut(s)	65
CviAII	CATG	7 cut(s)	69, 544, 716, 721, 810, 817, 826
DdeI	CTNAG	2 cut(s)	56, 525
DpnI	GATC	1 cut(s)	693
DpnII	GATC	1 cut(s)	691
DrdI	GACNNNNNNGTC	1 cut(s)	725
DseDI	GACNNNNNNGTC	1 cut(s)	725
Eam1104I	CTCTTC	2 cut(s)	96, 167
EarI	CTCTTC	2 cut(s)	96, 167
Ecl136II	GAGCTC	1 cut(s)	624
Eco130I	CCWWGG	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	626
Eco31I	GGTCTC	1 cut(s)	450
Eco32I	GATATC	1 cut(s)	571
Eco53kI	GAGCTC	1 cut(s)	624
Eco57I	CTGAAG	2 cut(s)	7, 588
EcoICRI	GAGCTC	1 cut(s)	624
EcoRI	GAATTC	1 cut(s)	742
EcoRV	GATATC	1 cut(s)	571
EcoT14I	CCWWGG	1 cut(s)	68
EcoT22I	ATGCAT	1 cut(s)	596
EcoT38I	GRGCYC	1 cut(s)	626
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	7 cut(s)	72, 547, 719, 724, 813, 820, 829
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FatI	CATG	7 cut(s)	68, 543, 715, 720, 809, 816, 825
FbaI	TGATCA	1 cut(s)	691
FblI	GTMKAC	1 cut(s)	558
Fnu4HI	GCNGC	5 cut(s)	28, 443, 474, 750, 753
FokI	GGATG	2 cut(s)	442, 842
FriOI	GRGCYC	1 cut(s)	626
Fsp4HI	GCNGC	5 cut(s)	28, 443, 474, 750, 753
FspBI	CTAG	4 cut(s)	140, 351, 435, 660
FspI	TGCGCA	2 cut(s)	300, 686
GlaI	GCGC	3 cut(s)	221, 300, 686
GluI	GCNGC	5 cut(s)	28, 443, 474, 750, 753
GsuI	CTGGAG	1 cut(s)	364
HaeIII	GGCC	2 cut(s)	67, 126
HapII	CCGG	2 cut(s)	236, 312
HhaI	GCGC	3 cut(s)	222, 301, 687
Hin1II	CATG	7 cut(s)	72, 547, 719, 724, 813, 820, 829
Hin6I	GCGC	3 cut(s)	220, 299, 685
HinP1I	GCGC	3 cut(s)	220, 299, 685
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	4 cut(s)	73, 97, 133, 253
HpaII	CCGG	2 cut(s)	236, 312
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	3 cut(s)	541, 559, 703
Hpy188I	TCNGA	5 cut(s)	96, 204, 408, 607, 646
Hpy188III	TCNNGA	4 cut(s)	77, 236, 257, 334
Hpy8I	GTNNAC	3 cut(s)	541, 559, 703
HpyAV	CCTTC	3 cut(s)	116, 612, 666
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4V	TGCA	5 cut(s)	180, 358, 445, 594, 841
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 149, 439
HpyF3I	CTNAG	2 cut(s)	56, 525
Hsp92II	CATG	7 cut(s)	72, 547, 719, 724, 813, 820, 829
HspAI	GCGC	3 cut(s)	220, 299, 685
Kpn2I	TCCGGA	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	691
Kzo9I	GATC	1 cut(s)	691
LmnI	GCTCC	2 cut(s)	533, 674
LpnPI	CCDG	9 cut(s)	49, 138, 153, 222, 249, 325, 328, 775, 786
Lsp1109I	GCAGC	5 cut(s)	39, 429, 460, 736, 739
LweI	GCATC	2 cut(s)	382, 420
MaeI	CTAG	4 cut(s)	140, 351, 435, 660
MaeIII	GTNAC	2 cut(s)	113, 609
MalI	GATC	1 cut(s)	693
MbiI	CCGCTC	1 cut(s)	549
MboI	GATC	1 cut(s)	691
MboII	GAAGA	9 cut(s)	53, 83, 92, 95, 184, 251, 327, 460, 721
MhlI	GDGCHC	1 cut(s)	626
MluCI	AATT	8 cut(s)	294, 381, 467, 518, 638, 742, 798, 833
MlyI	GAGTC	1 cut(s)	67
MnlI	CCTC	3 cut(s)	56, 272, 837
Mph1103I	ATGCAT	1 cut(s)	596
MroI	TCCGGA	1 cut(s)	235
MseI	TTAA	2 cut(s)	216, 378
MspA1I	CMGCKG	1 cut(s)	247
MspI	CCGG	2 cut(s)	236, 312
MspR9I	CCNGG	1 cut(s)	312
Mva1269I	GAATGC	2 cut(s)	487, 596
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	27, 149, 439
NciI	CCSGG	1 cut(s)	312
NcoI	CCATGG	1 cut(s)	68
NdeII	GATC	1 cut(s)	691
NheI	GCTAGC	1 cut(s)	139
NlaIII	CATG	7 cut(s)	72, 547, 719, 724, 813, 820, 829
NlaIV	GGNNCC	1 cut(s)	676
NmuCI	GTSAC	1 cut(s)	113
NsbI	TGCGCA	2 cut(s)	300, 686
NsiI	ATGCAT	1 cut(s)	596
NspI	RCATGY	1 cut(s)	820
PctI	GAATGC	2 cut(s)	487, 596
PfeI	GAWTC	3 cut(s)	97, 133, 253
PflMI	CCANNNNNTGG	1 cut(s)	721
PkrI	GCNGC	5 cut(s)	29, 444, 475, 751, 754
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	626
PspN4I	GGNNCC	1 cut(s)	676
PspPI	GGNCC	1 cut(s)	65
PstI	CTGCAG	1 cut(s)	447
PvuII	CAGCTG	1 cut(s)	247
SacI	GAGCTC	1 cut(s)	626
SaqAI	TTAA	2 cut(s)	216, 378
SatI	GCNGC	5 cut(s)	28, 443, 474, 750, 753
Sau3AI	GATC	1 cut(s)	691
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	312
SduI	GDGCHC	1 cut(s)	626
SfaNI	GCATC	2 cut(s)	382, 420
SfcI	CTRYAG	1 cut(s)	443
Sse9I	AATT	8 cut(s)	294, 381, 467, 518, 638, 742, 798, 833
SsiI	CCGC	2 cut(s)	222, 549
SspI	AATATT	2 cut(s)	412, 650
SspMI	CTAG	4 cut(s)	140, 351, 435, 660
SstI	GAGCTC	1 cut(s)	626
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	119
TaqI	TCGA	1 cut(s)	290
TasI	AATT	8 cut(s)	294, 381, 467, 518, 638, 742, 798, 833
TfiI	GAWTC	3 cut(s)	97, 133, 253
Tru1I	TTAA	2 cut(s)	216, 378
Tru9I	TTAA	2 cut(s)	216, 378
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	5 cut(s)	27, 442, 473, 749, 752
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	4 cut(s)	66, 342, 798, 846
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	1 cut(s)	43
Van91I	CCANNNNNTGG	1 cut(s)	721
XapI	RAATTY	1 cut(s)	742
XceI	RCATGY	1 cut(s)	820
XmiI	GTMKAC	1 cut(s)	558
XspI	CTAG	4 cut(s)	140, 351, 435, 660
Zsp2I	ATGCAT	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.