Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022885.1

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Reverse (-)

275 .. 1442

Gene Structure 1168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022885.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ctgaaaagtgagctgaaggatctatatataaattcagcagttcaagttgatgttgctggaaacaggaaggctgttgttgtccatgtaccctatagactgaggaaggcttaccgcaagatccatgttcgtcttgtgagggagcttgagaagaagttcagcggaaaggatgttatcctgattgctacacgtaggatagtgaggcctccaaagaaaggttctgctgttcaacggccccgcactcgcacactaactgctgtccacgaggctatgttggaggatgttgtctctcctgctgagattgtcggaaagcgcaccagatatcgtcttgatgggtcaaagataatgaaggtgtttttggaccccaaggagcgaaacaacacagaatacaagctggagagcttctctgcagtttatcggaagctgtcgggcaaagatgttgtgtttgagtatcctattactgaggcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7e

Protein Analysis

155

Amino Acids

17.85

Weight (kDa)

10.2

Isoelectric Point (pI)

21.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	112, 159, 235
AclWI	GGATC	2 cut(s)	27, 112
AcsI	RAATTY	1 cut(s)	31
AcuI	CTGAAG	1 cut(s)	35
AfaI	GTAC	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	212
AflIII	ACRYGT	1 cut(s)	185
AgsI	TTSAA	2 cut(s)	44, 227
AjuI	GAANNNNNNNTTGG	4 cut(s)	199, 231, 338, 370
AluBI	AGCT	5 cut(s)	13, 142, 391, 399, 421
AluI	AGCT	5 cut(s)	13, 142, 391, 399, 421
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	2 cut(s)	27, 112
AoxI	GGCC	3 cut(s)	200, 230, 462
ApoI	RAATTY	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	312
AspS9I	GGNCC	2 cut(s)	231, 358
AvaII	GGWCC	1 cut(s)	358
BauI	CACGAG	1 cut(s)	260
BccI	CCATC	1 cut(s)	323
BceAI	ACGGC	1 cut(s)	245
BciVI	GTATCC	1 cut(s)	459
BcoDI	GTCTC	1 cut(s)	289
BfaI	CTAG	1 cut(s)	466
BfmI	CTRYAG	2 cut(s)	91, 405
BfuI	GTATCC	1 cut(s)	459
Bme18I	GGWCC	1 cut(s)	358
BmgT120I	GGNCC	2 cut(s)	231, 358
BmiI	GGNNCC	2 cut(s)	233, 360
BplI	GAGNNNNNCTC	2 cut(s)	386, 418
BpmI	CTGGAG	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	164
BsaAI	YACGTR	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	2 cut(s)	172, 283
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMII	CTCAG	3 cut(s)	89, 285, 450
BshFI	GGCC	3 cut(s)	202, 232, 464
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	289
BsnI	GGCC	3 cut(s)	202, 232, 464
Bsp143I	GATC	2 cut(s)	19, 117
BspACI	CCGC	3 cut(s)	112, 159, 235
BspANI	GGCC	3 cut(s)	202, 232, 464
BspCNI	CTCAG	3 cut(s)	90, 286, 451
BspLI	GGNNCC	2 cut(s)	233, 360
BspMAI	CTGCAG	1 cut(s)	409
BspPI	GGATC	2 cut(s)	27, 112
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	2 cut(s)	19, 117
BssSI	CACGAG	1 cut(s)	260
BssT1I	CCWWGG	1 cut(s)	363
Bst2BI	CACGAG	1 cut(s)	260
BstBAI	YACGTR	1 cut(s)	188
BstDEI	CTNAG	3 cut(s)	98, 294, 459
BstF5I	GGATG	2 cut(s)	172, 283
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	2 cut(s)	22, 120
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	2 cut(s)	19, 117
BstSFI	CTRYAG	2 cut(s)	91, 405
BstX2I	RGATCY	2 cut(s)	19, 117
BstYI	RGATCY	2 cut(s)	19, 117
BsuI	GTATCC	1 cut(s)	459
BsuRI	GGCC	3 cut(s)	202, 232, 464
BtsCI	GGATG	2 cut(s)	172, 283
CfoI	GCGC	1 cut(s)	312
Cfr13I	GGNCC	2 cut(s)	231, 358
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	2 cut(s)	83, 122
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	3 cut(s)	98, 294, 459
DpnI	GATC	2 cut(s)	21, 119
DpnII	GATC	2 cut(s)	19, 117
Eco130I	CCWWGG	1 cut(s)	363
Eco147I	AGGCCT	2 cut(s)	202, 464
Eco32I	GATATC	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	35
EcoRV	GATATC	1 cut(s)	320
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	2 cut(s)	86, 125
FaiI	YATR	7 cut(s)	25, 27, 29, 84, 93, 123, 269
FatI	CATG	2 cut(s)	82, 121
FauI	CCCGC	1 cut(s)	242
FokI	GGATG	2 cut(s)	179, 290
FspBI	CTAG	1 cut(s)	466
GlaI	GCGC	1 cut(s)	311
GsuI	CTGGAG	1 cut(s)	413
HaeIII	GGCC	3 cut(s)	202, 232, 464
HhaI	GCGC	1 cut(s)	312
Hin1II	CATG	2 cut(s)	86, 125
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	2 cut(s)	305, 417
Hpy188III	TCNNGA	2 cut(s)	175, 326
Hpy8I	GTNNAC	1 cut(s)	259
HpyAV	CCTTC	4 cut(s)	10, 61, 97, 340
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	1 cut(s)	407
HpyF3I	CTNAG	3 cut(s)	98, 294, 459
HpySE526I	ACGT	1 cut(s)	187
Hsp92II	CATG	2 cut(s)	86, 125
HspAI	GCGC	1 cut(s)	310
Kzo9I	GATC	2 cut(s)	19, 117
LmnI	GCTCC	2 cut(s)	139, 367
LpnPI	CCDG	6 cut(s)	42, 49, 188, 303, 328, 377
MaeI	CTAG	1 cut(s)	466
MaeII	ACGT	1 cut(s)	187
MalI	GATC	2 cut(s)	21, 119
MboI	GATC	2 cut(s)	19, 117
MboII	GAAGA	1 cut(s)	160
MflI	RGATCY	2 cut(s)	19, 117
MluCI	AATT	1 cut(s)	31
MmeI	TCCRAC	2 cut(s)	252, 283
MnlI	CCTC	7 cut(s)	93, 129, 192, 213, 256, 268, 454
MroXI	GAANNNNTTC	1 cut(s)	152
MspA1I	CMGCKG	1 cut(s)	159
NdeII	GATC	2 cut(s)	19, 117
NlaIII	CATG	2 cut(s)	86, 125
NlaIV	GGNNCC	2 cut(s)	233, 360
PceI	AGGCCT	2 cut(s)	202, 464
PdmI	GAANNNNTTC	1 cut(s)	152
Ppu21I	YACGTR	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	233, 360
PspPI	GGNCC	2 cut(s)	231, 358
PstI	CTGCAG	1 cut(s)	409
PsuI	RGATCY	2 cut(s)	19, 117
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
Sau3AI	GATC	2 cut(s)	19, 117
Sau96I	GGNCC	2 cut(s)	231, 358
SetI	ASST	8 cut(s)	15, 144, 190, 217, 351, 393, 401, 423
SfcI	CTRYAG	2 cut(s)	91, 405
SinI	GGWCC	1 cut(s)	358
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	1 cut(s)	31
SseBI	AGGCCT	2 cut(s)	202, 464
SsiI	CCGC	3 cut(s)	112, 159, 235
SspMI	CTAG	1 cut(s)	466
StuI	AGGCCT	2 cut(s)	202, 464
StyI	CCWWGG	1 cut(s)	363
TaiI	ACGT	1 cut(s)	190
TasI	AATT	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	358
XapI	RAATTY	1 cut(s)	31
XmnI	GAANNNNTTC	1 cut(s)	152
XspI	CTAG	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.