Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Reverse (-)

6469891 .. 6472221

Gene Structure 2331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G086800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTATACGTCAAGGAACAGGATCCATAAAGACAAGGGTGCTGAACCCACTGAGTTTGAAGAGTCGGTTGCGCAAGCAATCTTTGATTTGGACAATGCAGGCACAGATCTGAAAAGTGAATTGAAGGATCTCTATATTAATTCTGCTGTTCAAGTTGATGTGGCTGGGAACCGGAAGGCTGTTGTTATTCATATACCATATAGACTGAGGAAGGCTTATCGCAAGATCCATGTTAGGCTCGTGAGGGAGCTAGAGAAGAAATTCAGTGGAAAGGATGTGATCCTGATTGCCACACGGAGGATAGTGAGGCCTCCAAAGAAAGGCTCTGCTGCTCAACGACCCCGCACTCGTACCCTAACTGCTGTGCACGAGGCAATGTTGGAGGACGTTGTTTTGCCTGCTGAGATTGTTGGGAAGCGCACCAGATATCGACTTGATGGATCCAAGATAATGAAGGTGTTCTTGGACCCCAAGGAACGAAACAACACCGAATACAAGCTGGAGAGCTTTTCTGCAGTTTACAGGAAGCTTTCAGGAAAAGATGTTGTGTTTGAGTATCCAATAACTGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7e

Protein Analysis

192

Amino Acids

21.9

Weight (kDa)

9.83

Isoelectric Point (pI)

26.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	72
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	343
AclWI	GGATC	7 cut(s)	16, 29, 135, 220, 274, 435, 448
AcsI	RAATTY	1 cut(s)	260
AfaI	GTAC	1 cut(s)	352
AfiI	CCNNNNNNNGG	2 cut(s)	297, 320
AgsI	TTSAA	3 cut(s)	59, 124, 152
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AluBI	AGCT	4 cut(s)	250, 499, 507, 529
AluI	AGCT	4 cut(s)	250, 499, 507, 529
Alw21I	GWGCWC	1 cut(s)	369
Alw44I	GTGCAC	1 cut(s)	365
AlwI	GGATC	7 cut(s)	16, 29, 135, 220, 274, 435, 448
AoxI	GGCC	1 cut(s)	308
ApaLI	GTGCAC	1 cut(s)	365
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	1 cut(s)	260
AseI	ATTAAT	1 cut(s)	138
Asp700I	GAANNNNTTC	2 cut(s)	260, 458
AspLEI	GCGC	2 cut(s)	73, 420
AspS9I	GGNCC	1 cut(s)	466
AvaII	GGWCC	1 cut(s)	466
BaeGI	GKGCMC	1 cut(s)	369
BamHI	GGATCC	2 cut(s)	21, 440
BauI	CACGAG	2 cut(s)	239, 368
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	1 cut(s)	431
BciVI	GTATCC	1 cut(s)	567
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	513
BfuI	GTATCC	1 cut(s)	567
BglII	AGATCT	1 cut(s)	106
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme18I	GGWCC	1 cut(s)	466
BmgT120I	GGNCC	1 cut(s)	466
BmiI	GGNNCC	4 cut(s)	23, 170, 442, 468
BmsI	GCATC	1 cut(s)	559
BpmI	CTGGAG	1 cut(s)	521
BsaJI	CCNNGG	1 cut(s)	471
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	2 cut(s)	297, 320
Bse3DI	GCAATG	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	2 cut(s)	297, 320
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	3 cut(s)	42, 197, 393
BseSI	GKGCMC	1 cut(s)	369
BseXI	GCAGC	1 cut(s)	316
BseYI	CCCAGC	1 cut(s)	164
BshFI	GGCC	1 cut(s)	310
BsiHKAI	GWGCWC	1 cut(s)	369
BsiSI	CCGG	1 cut(s)	172
BslI	CCNNNNNNNGG	2 cut(s)	297, 320
BsnI	GGCC	1 cut(s)	310
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	6 cut(s)	21, 106, 127, 225, 279, 440
BspACI	CCGC	1 cut(s)	343
BspANI	GGCC	1 cut(s)	310
BspCNI	CTCAG	3 cut(s)	43, 198, 394
BspLI	GGNNCC	4 cut(s)	23, 170, 442, 468
BspMAI	CTGCAG	1 cut(s)	517
BspPI	GGATC	7 cut(s)	16, 29, 135, 220, 274, 435, 448
BsrDI	GCAATG	1 cut(s)	381
BssECI	CCNNGG	1 cut(s)	471
BssMI	GATC	6 cut(s)	21, 106, 127, 225, 279, 440
BssNAI	GTATAC	1 cut(s)	6
BssSI	CACGAG	2 cut(s)	239, 368
BssT1I	CCWWGG	1 cut(s)	471
Bst1107I	GTATAC	1 cut(s)	6
Bst2BI	CACGAG	2 cut(s)	239, 368
Bst6I	CTCTTC	1 cut(s)	54
BstC8I	GCNNGC	3 cut(s)	75, 100, 399
BstDEI	CTNAG	4 cut(s)	51, 206, 402, 573
BstF5I	GGATG	1 cut(s)	280
BstHHI	GCGC	2 cut(s)	73, 420
BstKTI	GATC	6 cut(s)	24, 109, 130, 228, 282, 443
BstMBI	GATC	6 cut(s)	21, 106, 127, 225, 279, 440
BstSFI	CTRYAG	1 cut(s)	513
BstSLI	GKGCMC	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	316
BstX2I	RGATCY	5 cut(s)	21, 106, 127, 225, 440
BstYI	RGATCY	5 cut(s)	21, 106, 127, 225, 440
BstZ17I	GTATAC	1 cut(s)	6
BsuI	GTATCC	1 cut(s)	567
BsuRI	GGCC	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	2 cut(s)	48, 271
Cac8I	GCNNGC	3 cut(s)	75, 100, 399
CfoI	GCGC	2 cut(s)	73, 420
Cfr13I	GGNCC	1 cut(s)	466
Csp6I	GTAC	1 cut(s)	351
CspCI	CAANNNNNGTGG	2 cut(s)	37, 72
CviAII	CATG	1 cut(s)	230
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	4 cut(s)	51, 206, 402, 573
DpnI	GATC	6 cut(s)	23, 108, 129, 227, 281, 442
DpnII	GATC	6 cut(s)	21, 106, 127, 225, 279, 440
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	471
Eco147I	AGGCCT	1 cut(s)	310
Eco32I	GATATC	1 cut(s)	428
Eco47I	GGWCC	1 cut(s)	466
EcoRV	GATATC	1 cut(s)	428
EcoT14I	CCWWGG	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	1 cut(s)	233
FaiI	YATR	8 cut(s)	6, 27, 135, 192, 194, 199, 201, 231
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FatI	CATG	1 cut(s)	229
FauI	CCCGC	1 cut(s)	350
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	1 cut(s)	251
FspI	TGCGCA	1 cut(s)	72
GlaI	GCGC	2 cut(s)	72, 419
GluI	GCNGC	1 cut(s)	330
GsaI	CCCAGC	1 cut(s)	168
GsuI	CTGGAG	1 cut(s)	521
HaeIII	GGCC	1 cut(s)	310
HapII	CCGG	1 cut(s)	172
HhaI	GCGC	2 cut(s)	73, 420
Hin1II	CATG	1 cut(s)	233
Hin6I	GCGC	2 cut(s)	71, 418
HinP1I	GCGC	2 cut(s)	71, 418
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	1 cut(s)	172
Hpy166II	GTNNAC	3 cut(s)	6, 367, 520
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	3 cut(s)	241, 283, 534
Hpy8I	GTNNAC	3 cut(s)	6, 367, 520
HpyAV	CCTTC	4 cut(s)	118, 169, 205, 448
HpyCH4IV	ACGT	2 cut(s)	8, 387
HpyCH4V	TGCA	3 cut(s)	98, 367, 515
HpyF3I	CTNAG	4 cut(s)	51, 206, 402, 573
HpySE526I	ACGT	2 cut(s)	8, 387
Hsp92II	CATG	1 cut(s)	233
HspAI	GCGC	2 cut(s)	71, 418
Kzo9I	GATC	6 cut(s)	21, 106, 127, 225, 279, 440
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	1 cut(s)	559
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	2 cut(s)	8, 387
MalI	GATC	6 cut(s)	23, 108, 129, 227, 281, 442
MboI	GATC	6 cut(s)	21, 106, 127, 225, 279, 440
MboII	GAAGA	2 cut(s)	71, 268
MflI	RGATCY	5 cut(s)	21, 106, 127, 225, 440
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	3 cut(s)	119, 139, 260
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	7 cut(s)	201, 237, 291, 300, 321, 364, 376
MroXI	GAANNNNTTC	2 cut(s)	260, 458
MseI	TTAA	1 cut(s)	138
MspI	CCGG	1 cut(s)	172
NdeII	GATC	6 cut(s)	21, 106, 127, 225, 279, 440
NlaIII	CATG	1 cut(s)	233
NlaIV	GGNNCC	4 cut(s)	23, 170, 442, 468
NsbI	TGCGCA	1 cut(s)	72
PceI	AGGCCT	1 cut(s)	310
PdmI	GAANNNNTTC	2 cut(s)	260, 458
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PshBI	ATTAAT	1 cut(s)	138
PspFI	CCCAGC	1 cut(s)	164
PspN4I	GGNNCC	4 cut(s)	23, 170, 442, 468
PspPI	GGNCC	1 cut(s)	466
PstI	CTGCAG	1 cut(s)	517
PsuI	RGATCY	5 cut(s)	21, 106, 127, 225, 440
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	6 cut(s)	21, 106, 127, 225, 279, 440
Sau96I	GGNCC	1 cut(s)	466
SchI	GAGTC	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	369
SetI	ASST	7 cut(s)	11, 252, 390, 459, 501, 509, 531
SfaNI	GCATC	1 cut(s)	559
SfcI	CTRYAG	1 cut(s)	513
SinI	GGWCC	1 cut(s)	466
Sse9I	AATT	3 cut(s)	119, 139, 260
SseBI	AGGCCT	1 cut(s)	310
SsiI	CCGC	1 cut(s)	343
SspMI	CTAG	1 cut(s)	251
StuI	AGGCCT	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	471
TaiI	ACGT	2 cut(s)	11, 390
TaqI	TCGA	1 cut(s)	430
TasI	AATT	3 cut(s)	119, 139, 260
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	2 cut(s)	55, 271
TseI	GCWGC	1 cut(s)	329
TspDTI	ATGAA	2 cut(s)	179, 467
TspGWI	ACGGA	1 cut(s)	310
TspRI	CASTG	2 cut(s)	55, 271
VneI	GTGCAC	1 cut(s)	365
VpaK11BI	GGWCC	1 cut(s)	466
VspI	ATTAAT	1 cut(s)	138
XapI	RAATTY	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	2 cut(s)	260, 458
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.