Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Reverse (-)

61849477 .. 61851634

Gene Structure 2158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00268800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTTCACTTCAAGGAAGAAGATCCACAAGGATAAGGATGCGGAACCTACTGAGTTTGAGGAGTCTGTTGCACAGTCAATCTTTGATTTGGAGAACACAAACCAAGAGCTGAAAAGTGACTTGAAGGACTTGTACATTAACTCTGCAGCTCTCGTTGATGTTGCTGGAAATCGGAAGGCTGTTGTTATCCATGTTCCTTATAGACTGAGGAAGGCTTACCGTAAGATCCATGTTAGGCTTGTGAGGGAGCTTGAGAAGAAGTTCAGTGGAAAGGATGTGATTCTGATTGCCACACGTAGGATTGTGAGGCCTCCAAAGAAAGGCTCTGCTGCTCAACGTCCGCGCACTCGCACCCTGACTGCTGTTCATGAGGCAATATTGGAGGATGTTGTTTTGCCTGCTGAAATTGTTGGCAAGCGCACCAGATATCGCCTTGATGGTTCCAAGATCATGAAGGTTTTCCTTGACCCGAAAGAGCGAAACAACACTGAGTATAAGCTGGAGAGCTTTTCTGCAGTTTACCGTAAGCTTTCAGGAAAAGATGTTGTTTTTGAATACCCCATTACCGAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7e

Protein Analysis

191

Amino Acids

22.01

Weight (kDa)

9.8

Isoelectric Point (pI)

27.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7e	PF01251	7 - 186	1.1e-78	Ribosomal protein S7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	343
AciI	CCGC	2 cut(s)	41, 341
AclWI	GGATC	2 cut(s)	16, 220
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	2 cut(s)	297, 320
AflIII	ACRYGT	1 cut(s)	293
AgsI	TTSAA	3 cut(s)	12, 124, 554
AluBI	AGCT	6 cut(s)	109, 149, 250, 499, 507, 529
AluI	AGCT	6 cut(s)	109, 149, 250, 499, 507, 529
AlwI	GGATC	2 cut(s)	16, 220
AoxI	GGCC	2 cut(s)	308, 570
ApeKI	GCWGC	2 cut(s)	146, 329
Asp700I	GAANNNNTTC	2 cut(s)	260, 458
AspLEI	GCGC	2 cut(s)	345, 420
BarI	GAAGNNNNNNTAC	2 cut(s)	116, 148
BbvI	GCAGC	2 cut(s)	158, 316
BccI	CCATC	1 cut(s)	431
BfaI	CTAG	1 cut(s)	574
BfmI	CTRYAG	2 cut(s)	144, 513
BisI	GCNGC	2 cut(s)	147, 330
BlsI	GCNGC	2 cut(s)	148, 331
BmiI	GGNNCC	2 cut(s)	45, 442
BmsI	GCATC	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	521
BpuEI	CTTGAG	1 cut(s)	272
BsaAI	YACGTR	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	567
Bsc4I	CCNNNNNNNGG	2 cut(s)	297, 320
BseDI	CCNNGG	1 cut(s)	567
BseGI	GGATG	3 cut(s)	43, 280, 391
BseLI	CCNNNNNNNGG	2 cut(s)	297, 320
BseMII	CTCAG	3 cut(s)	42, 197, 480
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	2 cut(s)	158, 316
Bsh1236I	CGCG	1 cut(s)	343
BshFI	GGCC	2 cut(s)	310, 572
BslI	CCNNNNNNNGG	2 cut(s)	297, 320
BsnI	GGCC	2 cut(s)	310, 572
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	21, 225, 447
BspACI	CCGC	2 cut(s)	41, 341
BspANI	GGCC	2 cut(s)	310, 572
BspCNI	CTCAG	3 cut(s)	43, 198, 481
BspFNI	CGCG	1 cut(s)	343
BspHI	TCATGA	2 cut(s)	367, 450
BspLI	GGNNCC	2 cut(s)	45, 442
BspMAI	CTGCAG	2 cut(s)	148, 517
BspPI	GGATC	2 cut(s)	16, 220
BsrGI	TGTACA	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	567
BssMI	GATC	3 cut(s)	21, 225, 447
Bst4CI	ACNGT	3 cut(s)	75, 221, 524
BstAUI	TGTACA	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	399, 416
BstDEI	CTNAG	3 cut(s)	51, 206, 489
BstF5I	GGATG	3 cut(s)	43, 280, 391
BstFNI	CGCG	1 cut(s)	343
BstHHI	GCGC	2 cut(s)	345, 420
BstKTI	GATC	3 cut(s)	24, 228, 450
BstMBI	GATC	3 cut(s)	21, 225, 447
BstSFI	CTRYAG	2 cut(s)	144, 513
BstUI	CGCG	1 cut(s)	343
BstV1I	GCAGC	2 cut(s)	158, 316
BstX2I	RGATCY	2 cut(s)	21, 225
BstYI	RGATCY	2 cut(s)	21, 225
BsuRI	GGCC	2 cut(s)	310, 572
BtsCI	GGATG	3 cut(s)	43, 280, 391
BtsIMutI	CAGTG	2 cut(s)	271, 486
Cac8I	GCNNGC	2 cut(s)	399, 416
CciI	TCATGA	2 cut(s)	367, 450
CfoI	GCGC	2 cut(s)	345, 420
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	4 cut(s)	191, 230, 368, 451
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	3 cut(s)	51, 206, 489
DpnI	GATC	3 cut(s)	23, 227, 449
DpnII	GATC	3 cut(s)	21, 225, 447
Eco147I	AGGCCT	2 cut(s)	310, 572
Eco32I	GATATC	1 cut(s)	428
EcoRV	GATATC	1 cut(s)	428
FaeI	CATG	4 cut(s)	194, 233, 371, 454
FaiI	YATR	6 cut(s)	192, 201, 231, 369, 452, 495
FatI	CATG	4 cut(s)	190, 229, 367, 450
Fnu4HI	GCNGC	2 cut(s)	147, 330
FokI	GGATG	3 cut(s)	50, 287, 398
Fsp4HI	GCNGC	2 cut(s)	147, 330
FspBI	CTAG	1 cut(s)	574
GlaI	GCGC	2 cut(s)	344, 419
GluI	GCNGC	2 cut(s)	147, 330
GsuI	CTGGAG	1 cut(s)	521
HaeIII	GGCC	2 cut(s)	310, 572
HhaI	GCGC	2 cut(s)	345, 420
Hin1II	CATG	4 cut(s)	194, 233, 371, 454
Hin6I	GCGC	2 cut(s)	343, 418
HinP1I	GCGC	2 cut(s)	343, 418
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	2 cut(s)	62, 280
Hpy166II	GTNNAC	2 cut(s)	6, 520
Hpy188I	TCNGA	2 cut(s)	174, 285
Hpy188III	TCNNGA	3 cut(s)	368, 451, 534
Hpy8I	GTNNAC	2 cut(s)	6, 520
HpyAV	CCTTC	4 cut(s)	118, 169, 205, 448
HpyCH4III	ACNGT	3 cut(s)	75, 221, 524
HpyCH4IV	ACGT	2 cut(s)	295, 337
HpyCH4V	TGCA	3 cut(s)	71, 146, 515
HpyF3I	CTNAG	3 cut(s)	51, 206, 489
HpySE526I	ACGT	2 cut(s)	295, 337
Hsp92II	CATG	4 cut(s)	194, 233, 371, 454
HspAI	GCGC	2 cut(s)	343, 418
Kzo9I	GATC	3 cut(s)	21, 225, 447
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	6 cut(s)	150, 368, 411, 436, 485, 519
Lsp1109I	GCAGC	2 cut(s)	158, 316
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	1 cut(s)	574
MaeII	ACGT	2 cut(s)	295, 337
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	3 cut(s)	23, 227, 449
MboI	GATC	3 cut(s)	21, 225, 447
MboII	GAAGA	3 cut(s)	28, 31, 268
MflI	RGATCY	2 cut(s)	21, 225
MluCI	AATT	1 cut(s)	405
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	8 cut(s)	52, 201, 237, 300, 321, 364, 376, 562
MroXI	GAANNNNTTC	2 cut(s)	260, 458
MseI	TTAA	1 cut(s)	138
MvnI	CGCG	1 cut(s)	343
NdeII	GATC	3 cut(s)	21, 225, 447
NlaIII	CATG	4 cut(s)	194, 233, 371, 454
NlaIV	GGNNCC	2 cut(s)	45, 442
NmuCI	GTSAC	1 cut(s)	116
PagI	TCATGA	2 cut(s)	367, 450
PceI	AGGCCT	2 cut(s)	310, 572
PdmI	GAANNNNTTC	2 cut(s)	260, 458
PfeI	GAWTC	1 cut(s)	280
PkrI	GCNGC	2 cut(s)	148, 331
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Ppu21I	YACGTR	1 cut(s)	296
PspN4I	GGNNCC	2 cut(s)	45, 442
PstI	CTGCAG	2 cut(s)	148, 517
PsuI	RGATCY	2 cut(s)	21, 225
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	2 cut(s)	147, 330
Sau3AI	GATC	3 cut(s)	21, 225, 447
SchI	GAGTC	1 cut(s)	71
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	2 cut(s)	144, 513
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	1 cut(s)	405
SseBI	AGGCCT	2 cut(s)	310, 572
SsiI	CCGC	2 cut(s)	41, 341
SspI	AATATT	1 cut(s)	378
SspMI	CTAG	1 cut(s)	574
StuI	AGGCCT	2 cut(s)	310, 572
TaaI	ACNGT	3 cut(s)	75, 221, 524
TaiI	ACGT	2 cut(s)	298, 340
TasI	AATT	1 cut(s)	405
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	2 cut(s)	271, 493
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	2 cut(s)	146, 329
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	2 cut(s)	356, 467
TspRI	CASTG	2 cut(s)	271, 493
XmnI	GAANNNNTTC	2 cut(s)	260, 458
XspI	CTAG	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.