Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Forward (+)

17282008 .. 17284782

Gene Structure 2775 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G222500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTTTACTTCAAGGAAGAAGATTCACAAAGATAACAATGCTGAACCGACTGAATTCGAAGAGTCAGTTGCACAAGCAGTAATTGAATTGGAAAGTAACAGTGACCTGAAAAGTGACCTGAAGGATCTATATATCAACTCAGCAGTTCAAGTTGATGTGTCTGGAAACCGGAAGGCCGTTGTTATTCATATTCCATATAGACTGAGGAAGGCTTATCGCAAGATCCATGTTCGGCTCGTGAGGGAGCTCGAGAAGAAGTTCAGTGGGAAGGATGTTATCCTGATTGCCACACGTAGGATATTGAGGCCTCCAAAGAAGGGGTCAGCTGCCCAACGTCCCCGCACTCGTACTCTAACTGCTGTGCACGAGGCAATGTTGGAGGATGTTGTTGCGCCTGCTGAGATTGTTGGTAAGCGCACCAGATACCGTCTTGATGGATCCAAGATAATGAAGGTGTTCTTGGATCCCAAGGAACGAAACAACACTGAATACAAGCTGGAGAGCTTTTCTGCAGTTTATCGGAAGCTTTCTGGAAAGGATGTTGTGTTCGAGTACCCCATCACTGATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7e

Protein Analysis

191

Amino Acids

21.81

Weight (kDa)

9.83

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	340
AclWI	GGATC	6 cut(s)	132, 217, 432, 445, 458, 471
AcsI	RAATTY	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	140
AfaI	GTAC	2 cut(s)	349, 554
AfiI	CCNNNNNNNGG	2 cut(s)	294, 317
AflIII	ACRYGT	1 cut(s)	290
AgsI	TTSAA	3 cut(s)	12, 86, 149
AjuI	GAANNNNNNNTTGG	2 cut(s)	443, 475
AloI	GAACNNNNNNTCC	2 cut(s)	530, 562
AluBI	AGCT	5 cut(s)	247, 326, 496, 504, 526
AluI	AGCT	5 cut(s)	247, 326, 496, 504, 526
Alw21I	GWGCWC	2 cut(s)	249, 366
Alw44I	GTGCAC	1 cut(s)	362
AlwI	GGATC	6 cut(s)	132, 217, 432, 445, 458, 471
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	2 cut(s)	174, 305
ApaLI	GTGCAC	1 cut(s)	362
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	1 cut(s)	53
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
Asp700I	GAANNNNTTC	2 cut(s)	257, 455
AspLEI	GCGC	2 cut(s)	394, 417
AsuII	TTCGAA	1 cut(s)	57
AvaI	CYCGRG	1 cut(s)	248
BaeGI	GKGCMC	1 cut(s)	366
BamHI	GGATCC	2 cut(s)	437, 463
BanII	GRGCYC	1 cut(s)	249
BauI	CACGAG	2 cut(s)	236, 365
Bbv12I	GWGCWC	2 cut(s)	249, 366
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	2 cut(s)	428, 566
BceAI	ACGGC	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	510
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
BmeT110I	CYCGRG	1 cut(s)	248
BmiI	GGNNCC	2 cut(s)	439, 465
BmsI	GCATC	1 cut(s)	556
BpmI	CTGGAG	1 cut(s)	518
Bpu14I	TTCGAA	1 cut(s)	57
BsaAI	YACGTR	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	468
BsaWI	WCCGGW	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 317
Bse3DI	GCAATG	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	3 cut(s)	277, 388, 544
BseLI	CCNNNNNNNGG	2 cut(s)	294, 317
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	3 cut(s)	153, 194, 390
BseSI	GKGCMC	1 cut(s)	366
BseXI	GCAGC	1 cut(s)	313
BshFI	GGCC	2 cut(s)	176, 307
BsiHKAI	GWGCWC	2 cut(s)	249, 366
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	169
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	2 cut(s)	294, 317
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	2 cut(s)	176, 307
BsoBI	CYCGRG	1 cut(s)	248
Bsp119I	TTCGAA	1 cut(s)	57
Bsp1286I	GDGCHC	2 cut(s)	249, 366
Bsp143I	GATC	4 cut(s)	124, 222, 437, 463
BspACI	CCGC	1 cut(s)	340
BspANI	GGCC	2 cut(s)	176, 307
BspCNI	CTCAG	3 cut(s)	152, 195, 391
BspLI	GGNNCC	2 cut(s)	439, 465
BspMAI	CTGCAG	1 cut(s)	514
BspPI	GGATC	6 cut(s)	132, 217, 432, 445, 458, 471
BspT104I	TTCGAA	1 cut(s)	57
BsrDI	GCAATG	1 cut(s)	378
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	4 cut(s)	124, 222, 437, 463
BssSI	CACGAG	2 cut(s)	236, 365
BssT1I	CCWWGG	1 cut(s)	468
Bst2BI	CACGAG	2 cut(s)	236, 365
Bst4CI	ACNGT	2 cut(s)	101, 428
Bst6I	CTCTTC	1 cut(s)	54
BstBAI	YACGTR	1 cut(s)	293
BstBI	TTCGAA	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	3 cut(s)	139, 203, 399
BstF5I	GGATG	3 cut(s)	277, 388, 544
BstHHI	GCGC	2 cut(s)	394, 417
BstKTI	GATC	4 cut(s)	127, 225, 440, 466
BstMBI	GATC	4 cut(s)	124, 222, 437, 463
BstSFI	CTRYAG	1 cut(s)	510
BstSLI	GKGCMC	1 cut(s)	366
BstV1I	GCAGC	1 cut(s)	313
BstX2I	RGATCY	4 cut(s)	124, 222, 437, 463
BstYI	RGATCY	4 cut(s)	124, 222, 437, 463
BsuRI	GGCC	2 cut(s)	176, 307
BtsCI	GGATG	3 cut(s)	277, 388, 544
BtsIMutI	CAGTG	4 cut(s)	106, 268, 483, 561
Cac8I	GCNNGC	1 cut(s)	396
CfoI	GCGC	2 cut(s)	394, 417
Csp6I	GTAC	2 cut(s)	348, 553
CviAII	CATG	1 cut(s)	227
CviJI	RGCY	9 cut(s)	176, 212, 235, 247, 307, 326, 496, 504, 526
CviKI_1	RGCY	9 cut(s)	176, 212, 235, 247, 307, 326, 496, 504, 526
CviQI	GTAC	2 cut(s)	348, 553
DdeI	CTNAG	3 cut(s)	139, 203, 399
DpnI	GATC	4 cut(s)	126, 224, 439, 465
DpnII	GATC	4 cut(s)	124, 222, 437, 463
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	468
Eco147I	AGGCCT	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	247
EcoRI	GAATTC	1 cut(s)	53
EcoT14I	CCWWGG	1 cut(s)	468
EcoT22I	ATGCAT	1 cut(s)	571
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	1 cut(s)	230
FaiI	YATR	7 cut(s)	130, 132, 189, 196, 198, 228, 571
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	1 cut(s)	226
FauI	CCCGC	1 cut(s)	347
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	3 cut(s)	284, 395, 551
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	327
GlaI	GCGC	2 cut(s)	393, 416
GluI	GCNGC	1 cut(s)	327
GsuI	CTGGAG	1 cut(s)	518
HaeIII	GGCC	2 cut(s)	176, 307
HapII	CCGG	1 cut(s)	169
HhaI	GCGC	2 cut(s)	394, 417
Hin1II	CATG	1 cut(s)	230
Hin6I	GCGC	2 cut(s)	392, 415
HinP1I	GCGC	2 cut(s)	392, 415
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	2 cut(s)	22, 62
HpaII	CCGG	1 cut(s)	169
Hpy166II	GTNNAC	2 cut(s)	6, 364
Hpy188I	TCNGA	1 cut(s)	522
Hpy188III	TCNNGA	6 cut(s)	162, 238, 250, 280, 431, 531
Hpy8I	GTNNAC	2 cut(s)	6, 364
HpyAV	CCTTC	6 cut(s)	115, 166, 202, 262, 310, 445
HpyCH4III	ACNGT	2 cut(s)	101, 428
HpyCH4IV	ACGT	2 cut(s)	292, 334
HpyCH4V	TGCA	4 cut(s)	71, 364, 512, 569
HpyF3I	CTNAG	3 cut(s)	139, 203, 399
HpySE526I	ACGT	2 cut(s)	292, 334
Hsp92II	CATG	1 cut(s)	230
HspAI	GCGC	2 cut(s)	392, 415
Kzo9I	GATC	4 cut(s)	124, 222, 437, 463
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	9 cut(s)	119, 131, 147, 182, 293, 408, 433, 482, 516
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	1 cut(s)	556
MaeII	ACGT	2 cut(s)	292, 334
MaeIII	GTNAC	3 cut(s)	95, 101, 113
MalI	GATC	4 cut(s)	126, 224, 439, 465
MboI	GATC	4 cut(s)	124, 222, 437, 463
MboII	GAAGA	4 cut(s)	28, 31, 71, 265
MflI	RGATCY	4 cut(s)	124, 222, 437, 463
MhlI	GDGCHC	2 cut(s)	249, 366
MluCI	AATT	3 cut(s)	53, 81, 86
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	6 cut(s)	198, 234, 297, 318, 361, 373
Mph1103I	ATGCAT	1 cut(s)	571
MroXI	GAANNNNTTC	2 cut(s)	257, 455
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	1 cut(s)	169
NdeII	GATC	4 cut(s)	124, 222, 437, 463
NlaIII	CATG	1 cut(s)	230
NlaIV	GGNNCC	2 cut(s)	439, 465
NmuCI	GTSAC	2 cut(s)	101, 113
NsiI	ATGCAT	1 cut(s)	571
NspV	TTCGAA	1 cut(s)	57
PaeR7I	CTCGAG	1 cut(s)	248
PceI	AGGCCT	1 cut(s)	307
PdmI	GAANNNNTTC	2 cut(s)	257, 455
PfeI	GAWTC	1 cut(s)	22
PkrI	GCNGC	1 cut(s)	328
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Ppu21I	YACGTR	1 cut(s)	293
Psp124BI	GAGCTC	1 cut(s)	249
PspN4I	GGNNCC	2 cut(s)	439, 465
PstI	CTGCAG	1 cut(s)	514
PsuI	RGATCY	4 cut(s)	124, 222, 437, 463
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	2 cut(s)	349, 554
RsaNI	GTAC	2 cut(s)	348, 553
SacI	GAGCTC	1 cut(s)	249
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	4 cut(s)	124, 222, 437, 463
SchI	GAGTC	1 cut(s)	71
SduI	GDGCHC	2 cut(s)	249, 366
SfaNI	GCATC	1 cut(s)	556
SfcI	CTRYAG	1 cut(s)	510
Sfr274I	CTCGAG	1 cut(s)	248
SfuI	TTCGAA	1 cut(s)	57
SlaI	CTCGAG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	3 cut(s)	53, 81, 86
SseBI	AGGCCT	1 cut(s)	307
SsiI	CCGC	1 cut(s)	340
SstI	GAGCTC	1 cut(s)	249
StuI	AGGCCT	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	2 cut(s)	101, 428
TaiI	ACGT	2 cut(s)	295, 337
TaqI	TCGA	3 cut(s)	57, 249, 549
TasI	AATT	3 cut(s)	53, 81, 86
TfiI	GAWTC	1 cut(s)	22
TscAI	CASTG	4 cut(s)	106, 268, 490, 568
TseFI	GTSAC	2 cut(s)	101, 113
TseI	GCWGC	1 cut(s)	326
Tsp45I	GTSAC	2 cut(s)	101, 113
TspDTI	ATGAA	2 cut(s)	176, 464
TspRI	CASTG	4 cut(s)	106, 268, 490, 568
VneI	GTGCAC	1 cut(s)	362
XapI	RAATTY	1 cut(s)	53
XhoI	CTCGAG	1 cut(s)	248
XmnI	GAANNNNTTC	2 cut(s)	257, 455
Zsp2I	ATGCAT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.