Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Reverse (-)

45777841 .. 45779846

Gene Structure 2006 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009059

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGATGGCCAAGTCAACTCAACTTCAGTTGACCCGAACAAAATTGGGTAGTAATACAAGGCCCAAGTCCGGTTTTGAGACTCGAAGCACACCTCTCTCTCTCTCTCTCCAGCTCTCGATTCCTCTCCAGTCAGGTTTGTCTAAGATGTTTACTTCAAGGAAGAAGATTCACAAGGATAAGGATGCCGAGCCGACCGAGTTTGAAGAGTCGGTTGCGCAAGCATTTTTCGATATGGAAAACACTAACCAGGAGCTGAAAAGTGAGCTGAAGGATCTATATATAAATTCAGCAGTTCAAGTTGATGTTGCTGGAAACAGGAAGGCTGTTGTTGTCCATGTACCCTATAGACTGAGGAAGGCGTACCGCAAGATCCATGTTCGTCTTGTGAGGGAGCTTGAGAAGAAGTTCAGTGGAAAGGATGTTATCCTGATTGCCACACGGAGGATAGTGAGGCCTCCAAAGAAAGGTTCTGCTGTTCAACGGCCCCGCACTCGCACACTAACTGCTGTCCACGAGGCTATGTTGGAGGATGTTGTCTCTCCTGCTGAGATTGTCGGAAAGCGCACCAGATATCGTCTTGATGGCTCAAAGATAATGAAGGTGTTTTTGGACCCCAAGGAGCGAAACAACACAGAATACAAGCTGGAGAGCTTCTCTGCAGTTTATCGGAAGCTGTCGGGCAAAGATGTTGTGTTTGAGTATCCTATTACTGAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7e

Protein Analysis

240

Amino Acids

27.31

Weight (kDa)

10.04

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7e	PF01251	55 - 234	3.3e-78	Ribosomal protein S7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	216
AciI	CCGC	2 cut(s)	364, 487
AclWI	GGATC	2 cut(s)	279, 364
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	283
AcuI	CTGAAG	2 cut(s)	8, 287
AfaI	GTAC	2 cut(s)	339, 362
AfiI	CCNNNNNNNGG	3 cut(s)	68, 441, 464
AgsI	TTSAA	4 cut(s)	156, 203, 296, 479
AjnI	CCWGG	1 cut(s)	246
AjuI	GAANNNNNNNTTGG	4 cut(s)	451, 483, 590, 622
AluBI	AGCT	7 cut(s)	112, 253, 265, 394, 643, 651, 673
AluI	AGCT	7 cut(s)	112, 253, 265, 394, 643, 651, 673
Alw26I	GTCTC	2 cut(s)	71, 541
AlwI	GGATC	2 cut(s)	279, 364
AlwNI	CAGNNNCTG	1 cut(s)	253
AoxI	GGCC	5 cut(s)	6, 59, 452, 482, 714
ApoI	RAATTY	1 cut(s)	283
Asp700I	GAANNNNTTC	1 cut(s)	404
AspLEI	GCGC	2 cut(s)	217, 564
AspS9I	GGNCC	3 cut(s)	60, 483, 610
AvaII	GGWCC	1 cut(s)	610
BalI	TGGCCA	1 cut(s)	8
BauI	CACGAG	1 cut(s)	512
BccI	CCATC	1 cut(s)	575
BceAI	ACGGC	1 cut(s)	497
BciT130I	CCWGG	1 cut(s)	248
BciVI	GTATCC	1 cut(s)	711
BcoDI	GTCTC	2 cut(s)	71, 541
BfaI	CTAG	1 cut(s)	718
BfmI	CTRYAG	2 cut(s)	343, 657
BfuI	GTATCC	1 cut(s)	711
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	1 cut(s)	610
BmgT120I	GGNCC	3 cut(s)	60, 483, 610
BmiI	GGNNCC	2 cut(s)	485, 612
BmrFI	CCNGG	1 cut(s)	248
BmsI	GCATC	1 cut(s)	172
BplI	GAGNNNNNCTC	2 cut(s)	638, 670
BpmI	CTGGAG	3 cut(s)	92, 110, 665
BpuEI	CTTGAG	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	615
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 441, 464
Bse1I	ACTGG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	615
BseGI	GGATG	3 cut(s)	187, 424, 535
BseLI	CCNNNNNNNGG	3 cut(s)	68, 441, 464
BseMII	CTCAG	3 cut(s)	341, 537, 702
BseNI	ACTGG	1 cut(s)	127
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	5 cut(s)	8, 61, 454, 484, 716
BsiEI	CGRYCG	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	3 cut(s)	68, 441, 464
BsmAI	GTCTC	2 cut(s)	71, 541
BsnI	GGCC	5 cut(s)	8, 61, 454, 484, 716
Bsp143I	GATC	2 cut(s)	271, 369
BspACI	CCGC	2 cut(s)	364, 487
BspANI	GGCC	5 cut(s)	8, 61, 454, 484, 716
BspCNI	CTCAG	3 cut(s)	342, 538, 703
BspLI	GGNNCC	2 cut(s)	485, 612
BspMAI	CTGCAG	1 cut(s)	661
BspPI	GGATC	2 cut(s)	279, 364
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	615
BssMI	GATC	2 cut(s)	271, 369
BssSI	CACGAG	1 cut(s)	512
BssT1I	CCWWGG	1 cut(s)	615
Bst2BI	CACGAG	1 cut(s)	512
Bst2UI	CCWGG	1 cut(s)	248
Bst6I	CTCTTC	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	4 cut(s)	141, 350, 546, 711
BstF5I	GGATG	3 cut(s)	187, 424, 535
BstHHI	GCGC	2 cut(s)	217, 564
BstKTI	GATC	2 cut(s)	274, 372
BstMAI	GTCTC	2 cut(s)	71, 541
BstMBI	GATC	2 cut(s)	271, 369
BstMCI	CGRYCG	1 cut(s)	195
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	246
BstSFI	CTRYAG	2 cut(s)	343, 657
BstX2I	RGATCY	2 cut(s)	271, 369
BstYI	RGATCY	2 cut(s)	271, 369
BsuI	GTATCC	1 cut(s)	711
BsuRI	GGCC	5 cut(s)	8, 61, 454, 484, 716
BtsCI	GGATG	3 cut(s)	187, 424, 535
BtsIMutI	CAGTG	1 cut(s)	415
Cac8I	GCNNGC	1 cut(s)	219
CaiI	CAGNNNCTG	1 cut(s)	253
CfoI	GCGC	2 cut(s)	217, 564
Cfr13I	GGNCC	3 cut(s)	60, 483, 610
Csp6I	GTAC	2 cut(s)	338, 361
CviAII	CATG	2 cut(s)	335, 374
CviQI	GTAC	2 cut(s)	338, 361
DdeI	CTNAG	4 cut(s)	141, 350, 546, 711
DpnI	GATC	2 cut(s)	273, 371
DpnII	GATC	2 cut(s)	271, 369
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	615
Eco147I	AGGCCT	2 cut(s)	454, 716
Eco32I	GATATC	1 cut(s)	572
Eco47I	GGWCC	1 cut(s)	610
Eco57I	CTGAAG	2 cut(s)	8, 287
EcoRII	CCWGG	1 cut(s)	246
EcoRV	GATATC	1 cut(s)	572
EcoT14I	CCWWGG	1 cut(s)	615
ErhI	CCWWGG	1 cut(s)	615
FaeI	CATG	2 cut(s)	338, 377
FaiI	YATR	8 cut(s)	233, 277, 279, 281, 336, 345, 375, 521
FatI	CATG	2 cut(s)	334, 373
FauI	CCCGC	1 cut(s)	494
FokI	GGATG	3 cut(s)	194, 431, 542
FspBI	CTAG	1 cut(s)	718
FspI	TGCGCA	1 cut(s)	216
GlaI	GCGC	2 cut(s)	216, 563
GsuI	CTGGAG	3 cut(s)	92, 110, 665
HaeIII	GGCC	5 cut(s)	8, 61, 454, 484, 716
HapII	CCGG	1 cut(s)	69
HhaI	GCGC	2 cut(s)	217, 564
Hin1II	CATG	2 cut(s)	338, 377
Hin6I	GCGC	2 cut(s)	215, 562
HinP1I	GCGC	2 cut(s)	215, 562
HincII	GTYRAC	2 cut(s)	15, 30
HindII	GTYRAC	2 cut(s)	15, 30
HinfI	GANTC	4 cut(s)	79, 118, 166, 206
HpaII	CCGG	1 cut(s)	69
Hpy166II	GTNNAC	4 cut(s)	15, 30, 150, 511
Hpy188I	TCNGA	2 cut(s)	557, 669
Hpy188III	TCNNGA	3 cut(s)	115, 427, 578
Hpy8I	GTNNAC	4 cut(s)	15, 30, 150, 511
HpyAV	CCTTC	4 cut(s)	262, 313, 349, 592
HpyCH4V	TGCA	1 cut(s)	659
HpyF3I	CTNAG	4 cut(s)	141, 350, 546, 711
Hsp92II	CATG	2 cut(s)	338, 377
HspAI	GCGC	2 cut(s)	215, 562
Kzo9I	GATC	2 cut(s)	271, 369
LmnI	GCTCC	3 cut(s)	250, 391, 619
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	718
MalI	GATC	2 cut(s)	273, 371
MboI	GATC	2 cut(s)	271, 369
MboII	GAAGA	4 cut(s)	172, 175, 215, 412
MflI	RGATCY	2 cut(s)	271, 369
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	2 cut(s)	41, 283
MluNI	TGGCCA	1 cut(s)	8
MlyI	GAGTC	2 cut(s)	73, 215
MmeI	TCCRAC	2 cut(s)	504, 535
Mox20I	TGGCCA	1 cut(s)	8
MroXI	GAANNNNTTC	1 cut(s)	404
MscI	TGGCCA	1 cut(s)	8
Msp20I	TGGCCA	1 cut(s)	8
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	248
NdeII	GATC	2 cut(s)	271, 369
NlaIII	CATG	2 cut(s)	338, 377
NlaIV	GGNNCC	2 cut(s)	485, 612
NmeAIII	GCCGAG	1 cut(s)	211
NsbI	TGCGCA	1 cut(s)	216
PceI	AGGCCT	2 cut(s)	454, 716
PdmI	GAANNNNTTC	1 cut(s)	404
PfeI	GAWTC	2 cut(s)	118, 166
PleI	GAGTC	2 cut(s)	73, 214
PpsI	GAGTC	2 cut(s)	73, 214
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	2 cut(s)	485, 612
PspPI	GGNCC	3 cut(s)	60, 483, 610
PstI	CTGCAG	1 cut(s)	661
PstNI	CAGNNNCTG	1 cut(s)	253
PsuI	RGATCY	2 cut(s)	271, 369
RsaI	GTAC	2 cut(s)	339, 362
RsaNI	GTAC	2 cut(s)	338, 361
Sau3AI	GATC	2 cut(s)	271, 369
Sau96I	GGNCC	3 cut(s)	60, 483, 610
SchI	GAGTC	2 cut(s)	73, 215
ScrFI	CCNGG	1 cut(s)	248
SfaNI	GCATC	1 cut(s)	172
SfcI	CTRYAG	2 cut(s)	343, 657
SinI	GGWCC	1 cut(s)	610
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	2 cut(s)	41, 283
SseBI	AGGCCT	2 cut(s)	454, 716
SsiI	CCGC	2 cut(s)	364, 487
SspMI	CTAG	1 cut(s)	718
StuI	AGGCCT	2 cut(s)	454, 716
StyD4I	CCNGG	1 cut(s)	246
StyI	CCWWGG	1 cut(s)	615
TaqI	TCGA	3 cut(s)	82, 116, 228
TaqII	GACCGA	1 cut(s)	209
TasI	AATT	2 cut(s)	41, 283
TfiI	GAWTC	2 cut(s)	118, 166
TscAI	CASTG	1 cut(s)	415
TspDTI	ATGAA	1 cut(s)	611
TspGWI	ACGGA	1 cut(s)	454
TspRI	CASTG	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	610
XapI	RAATTY	1 cut(s)	283
XmnI	GAANNNNTTC	1 cut(s)	404
XspI	CTAG	1 cut(s)	718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.