Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Reverse (-)

18059450 .. 18061302

Gene Structure 1853 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTTTTCGGCTCAGCATAAGATTCATAAGGAGAAGGGTGTGGAACTTTCTGAATTGGATGAGCAAGTTGCTCAGGCTTTCTTTGATTTGGAGAACACCAATCAAGAATTGAAAAGTGAGCTGAAGGATTTATACGTCAACTCGGCTGTTCAAGTTGATATCTCTGGAGGACGCAAGGCAATTGTTGTCAATGTTCCTTACAGACTGAGAAAAGCTTACCGGAAAATCCATGTTAGGCTTGTTCGTGAACTTGAGAAGAAGTTCAGTGGAAAGGATGTGATCCTCATTGCTACAAGGAGGATTGTGAGGCCGCCAAAGAAGGGTTCAGCGGCAAAGAGACCACGCAACCGTACTCTGACCTCAGTCCATGAAGCTATTCTTGATGATGTGGTCTTACCTGCAGAGATTGTTGGGAAGCGCACAAGGTACAGACTCGACGGTACCAAAATCATGAAGGTCTTCTTGGACCCAAAGGAAAGGAACAACACAGAGTACAAGGTTGAGGCTTTCTCTGCGGTTTACAAGAAGCTCACTGGCAAAGATGTCGTCTTTGAGTTTCCCATCACTGAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7e

Protein Analysis

191

Amino Acids

21.92

Weight (kDa)

9.8

Isoelectric Point (pI)

23.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7e	PF01251	7 - 186	2.8e-78	Ribosomal protein S7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	406
Acc65I	GGTACC	1 cut(s)	440
AccB1I	GGYRCC	1 cut(s)	440
AciI	CCGC	3 cut(s)	311, 329, 515
AclWI	GGATC	1 cut(s)	274
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	4 cut(s)	352, 428, 442, 494
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	2 cut(s)	112, 152
AjuI	GAANNNNNNNTTGG	4 cut(s)	307, 339, 446, 478
AluBI	AGCT	4 cut(s)	121, 215, 374, 529
AluI	AGCT	4 cut(s)	121, 215, 374, 529
Alw26I	GTCTC	1 cut(s)	331
AlwI	GGATC	1 cut(s)	274
AoxI	GGCC	1 cut(s)	308
ArsI	GACNNNNNNTTYG	2 cut(s)	531, 563
Asp700I	GAANNNNTTC	3 cut(s)	260, 375, 458
Asp718I	GGTACC	1 cut(s)	440
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	1 cut(s)	466
AvaII	GGWCC	1 cut(s)	466
BanI	GGYRCC	1 cut(s)	440
BarI	GAAGNNNNNNTAC	2 cut(s)	116, 148
BbsI	GAAGAC	1 cut(s)	451
BccI	CCATC	1 cut(s)	569
BcgI	CGANNNNNNTGC	2 cut(s)	526, 560
BcoDI	GTCTC	1 cut(s)	331
BfmI	CTRYAG	1 cut(s)	399
BfuAI	ACCTGC	1 cut(s)	406
BisI	GCNGC	2 cut(s)	311, 330
BlpI	GCTNAGC	1 cut(s)	12
BlsI	GCNGC	2 cut(s)	312, 331
Bme18I	GGWCC	1 cut(s)	466
BmgT120I	GGNCC	1 cut(s)	466
BmiI	GGNNCC	2 cut(s)	442, 468
BoxI	GACNNNNGTC	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	451
BplI	GAGNNNNNCTC	2 cut(s)	494, 526
BpmI	CTGGAG	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	72
Bpu1102I	GCTNAGC	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	272
BsaI	GGTCTC	1 cut(s)	331
BsaWI	WCCGGW	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse1I	ACTGG	1 cut(s)	538
Bse3DI	GCAATG	1 cut(s)	285
BseGI	GGATG	2 cut(s)	64, 280
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	4 cut(s)	26, 86, 197, 375
BseNI	ACTGG	1 cut(s)	538
BshFI	GGCC	1 cut(s)	310
BshNI	GGYRCC	1 cut(s)	440
BsiSI	CCGG	1 cut(s)	220
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	1 cut(s)	331
BsnI	GGCC	1 cut(s)	310
Bso31I	GGTCTC	1 cut(s)	331
Bsp143I	GATC	1 cut(s)	279
Bsp1720I	GCTNAGC	1 cut(s)	12
BspACI	CCGC	3 cut(s)	311, 329, 515
BspANI	GGCC	1 cut(s)	310
BspCNI	CTCAG	4 cut(s)	25, 85, 198, 374
BspHI	TCATGA	1 cut(s)	450
BspLI	GGNNCC	2 cut(s)	442, 468
BspMAI	CTGCAG	1 cut(s)	403
BspMI	ACCTGC	1 cut(s)	406
BspPI	GGATC	1 cut(s)	274
BspT107I	GGYRCC	1 cut(s)	440
BspTNI	GGTCTC	1 cut(s)	331
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	538
BssMI	GATC	1 cut(s)	279
Bst4CI	ACNGT	2 cut(s)	350, 440
BstDEI	CTNAG	4 cut(s)	12, 72, 206, 361
BstF5I	GGATG	2 cut(s)	64, 280
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	1 cut(s)	282
BstMAI	GTCTC	1 cut(s)	331
BstMBI	GATC	1 cut(s)	279
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstPAI	GACNNNNGTC	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	399
BstV2I	GAAGAC	1 cut(s)	451
BsuRI	GGCC	1 cut(s)	310
BtsCI	GGATG	2 cut(s)	64, 280
BtsIMutI	CAGTG	3 cut(s)	271, 531, 564
BveI	ACCTGC	1 cut(s)	406
CciI	TCATGA	1 cut(s)	450
CfoI	GCGC	1 cut(s)	420
Cfr13I	GGNCC	1 cut(s)	466
CseI	GACGC	1 cut(s)	180
Csp6I	GTAC	4 cut(s)	351, 427, 441, 493
CviAII	CATG	3 cut(s)	230, 368, 451
CviQI	GTAC	4 cut(s)	351, 427, 441, 493
DdeI	CTNAG	4 cut(s)	12, 72, 206, 361
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
Eco31I	GGTCTC	1 cut(s)	331
Eco32I	GATATC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	466
Eco57I	CTGAAG	1 cut(s)	143
EcoRV	GATATC	1 cut(s)	160
FaeI	CATG	3 cut(s)	233, 371, 454
FaiI	YATR	6 cut(s)	18, 27, 133, 231, 369, 452
FalI	AAGNNNNNCTT	4 cut(s)	363, 395, 446, 478
FatI	CATG	3 cut(s)	229, 367, 450
Fnu4HI	GCNGC	2 cut(s)	311, 330
FokI	GGATG	2 cut(s)	71, 287
Fsp4HI	GCNGC	2 cut(s)	311, 330
GlaI	GCGC	1 cut(s)	419
GluI	GCNGC	2 cut(s)	311, 330
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	310
HapII	CCGG	1 cut(s)	220
HgaI	GACGC	1 cut(s)	180
HhaI	GCGC	1 cut(s)	420
Hin1II	CATG	3 cut(s)	233, 371, 454
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	2 cut(s)	22, 432
HpaII	CCGG	1 cut(s)	220
Hpy166II	GTNNAC	3 cut(s)	139, 248, 520
Hpy188I	TCNGA	2 cut(s)	52, 357
Hpy188III	TCNNGA	5 cut(s)	104, 165, 245, 380, 451
Hpy8I	GTNNAC	3 cut(s)	139, 248, 520
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	4 cut(s)	28, 118, 313, 448
HpyCH4III	ACNGT	2 cut(s)	350, 440
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	1 cut(s)	401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	4 cut(s)	12, 72, 206, 361
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	3 cut(s)	233, 371, 454
HspAI	GCGC	1 cut(s)	418
KpnI	GGTACC	1 cut(s)	444
Kzo9I	GATC	1 cut(s)	279
LpnPI	CCDG	5 cut(s)	59, 150, 233, 411, 519
MaeII	ACGT	1 cut(s)	135
MalI	GATC	1 cut(s)	281
MboI	GATC	1 cut(s)	279
MboII	GAAGA	2 cut(s)	268, 451
MfeI	CAATTG	1 cut(s)	180
MluCI	AATT	3 cut(s)	53, 107, 180
MlyI	GAGTC	1 cut(s)	426
MnlI	CCTC	6 cut(s)	161, 291, 293, 300, 370, 496
MroXI	GAANNNNTTC	3 cut(s)	260, 375, 458
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	1 cut(s)	220
MunI	CAATTG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	512
NdeII	GATC	1 cut(s)	279
NlaIII	CATG	3 cut(s)	233, 371, 454
NlaIV	GGNNCC	2 cut(s)	442, 468
NmeAIII	GCCGAG	1 cut(s)	122
PagI	TCATGA	1 cut(s)	450
PdmI	GAANNNNTTC	3 cut(s)	260, 375, 458
PfeI	GAWTC	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	312, 331
PleI	GAGTC	1 cut(s)	426
PpsI	GAGTC	1 cut(s)	426
PshAI	GACNNNNGTC	1 cut(s)	362
PspN4I	GGNNCC	2 cut(s)	442, 468
PspPI	GGNCC	1 cut(s)	466
PstI	CTGCAG	1 cut(s)	403
RsaI	GTAC	4 cut(s)	352, 428, 442, 494
RsaNI	GTAC	4 cut(s)	351, 427, 441, 493
SatI	GCNGC	2 cut(s)	311, 330
Sau3AI	GATC	1 cut(s)	279
Sau96I	GGNCC	1 cut(s)	466
SchI	GAGTC	1 cut(s)	426
SfcI	CTRYAG	1 cut(s)	399
SinI	GGWCC	1 cut(s)	466
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	3 cut(s)	53, 107, 180
SsiI	CCGC	3 cut(s)	311, 329, 515
TaaI	ACNGT	2 cut(s)	350, 440
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	1 cut(s)	435
TasI	AATT	3 cut(s)	53, 107, 180
TatI	WGTACW	1 cut(s)	492
TauI	GCSGC	2 cut(s)	313, 332
TfiI	GAWTC	1 cut(s)	22
TscAI	CASTG	3 cut(s)	271, 538, 571
TspDTI	ATGAA	3 cut(s)	14, 384, 467
TspRI	CASTG	3 cut(s)	271, 538, 571
VpaK11BI	GGWCC	1 cut(s)	466
XmnI	GAANNNNTTC	3 cut(s)	260, 375, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.