Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Forward (+)

541708 .. 543385

Gene Structure 1678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G02560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTATTCGGGTCAGAACAAGATCCACAAGGATAAGGGTGTTGCACCAACAGAGTTTGAAGAGCAAGTTACTCAGGCTTTGTTTGACTTGGAGAACACCAACCAGGAGTTGAAAAGCGAGTTGAAAGATCTCTACATTAACCAAGCTGTTCAGATGGATATTTCTGGCAACCGCAAAGCTGTTGTGATCTACGTTCCATTCAGGCTGAGGAAAGCTTTCCGCAAGATTCATCTTCGTCTGGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAAGATGTGATCTTTGTTGCTACCAGAAGAATCATGCGCCCACCAAAGAAAGGCTCAGCTGTTCAGAGACCACGCAACAGAACTCTTACTTCTGTCCATGAAGCCATGCTCGAGGATGTCGCTTACCCTGCTGAGATTGTAGGAAAGAGAACCAGATACCGTCTTGATGGCACCAAGATCATGAAGGTATTTTTGGATAGTAAGCTAAAGAACGACACTGAGTACAAGCTGGAGACAATGGTGGGTGTGTACAGGAAACTTACAGGGAAAGATGTAGTTTTCGAGTACCCAGTCATAGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7e

Protein Analysis

191

Amino Acids

22.2

Weight (kDa)

9.78

Isoelectric Point (pI)

27.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7e	PF01251	7 - 186	1.3e-77	Ribosomal protein S7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	440
AciI	CCGC	2 cut(s)	172, 220
AclWI	GGATC	1 cut(s)	16
AfaI	GTAC	3 cut(s)	494, 521, 557
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	3 cut(s)	59, 112, 124
AjnI	CCWGG	1 cut(s)	102
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AluBI	AGCT	8 cut(s)	146, 179, 215, 250, 329, 475, 499, 572
AluI	AGCT	8 cut(s)	146, 179, 215, 250, 329, 475, 499, 572
Alw26I	GTCTC	2 cut(s)	331, 497
AlwI	GGATC	1 cut(s)	16
Ama87I	CYCGRG	1 cut(s)	380
Asp700I	GAANNNNTTC	2 cut(s)	215, 260
AspLEI	GCGC	1 cut(s)	309
AvaI	CYCGRG	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	440
BbvCI	CCTCAGC	1 cut(s)	206
BccI	CCATC	2 cut(s)	148, 431
BciT130I	CCWGG	1 cut(s)	104
BcoDI	GTCTC	2 cut(s)	331, 497
BglII	AGATCT	1 cut(s)	127
BlpI	GCTNAGC	1 cut(s)	325
Bme1390I	CCNGG	1 cut(s)	104
BmeT110I	CYCGRG	1 cut(s)	380
BmiI	GGNNCC	1 cut(s)	442
BmrFI	CCNGG	1 cut(s)	104
BmrI	ACTGGG	1 cut(s)	554
BmuI	ACTGGG	1 cut(s)	554
BpmI	CTGGAG	1 cut(s)	521
Bpu10I	CCTNAGC	1 cut(s)	206
Bpu1102I	GCTNAGC	1 cut(s)	325
BpuEI	CTTGAG	1 cut(s)	272
BsaI	GGTCTC	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse1I	ACTGG	1 cut(s)	560
BseBI	CCWGG	1 cut(s)	104
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMII	CTCAG	5 cut(s)	86, 197, 339, 393, 480
BseNI	ACTGG	1 cut(s)	560
BshNI	GGYRCC	1 cut(s)	440
BsiHKCI	CYCGRG	1 cut(s)	380
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	2 cut(s)	331, 497
Bso31I	GGTCTC	1 cut(s)	331
BsoBI	CYCGRG	1 cut(s)	380
Bsp1407I	TGTACA	1 cut(s)	519
Bsp143I	GATC	5 cut(s)	21, 127, 186, 279, 447
Bsp1720I	GCTNAGC	1 cut(s)	325
BspACI	CCGC	2 cut(s)	172, 220
BspCNI	CTCAG	5 cut(s)	85, 198, 338, 394, 481
BspHI	TCATGA	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	442
BspPI	GGATC	1 cut(s)	16
BspQI	GCTCTTC	1 cut(s)	54
BspT107I	GGYRCC	1 cut(s)	440
BspTNI	GGTCTC	1 cut(s)	331
BsrGI	TGTACA	1 cut(s)	519
BsrI	ACTGG	1 cut(s)	560
BssMI	GATC	5 cut(s)	21, 127, 186, 279, 447
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	431
Bst6I	CTCTTC	1 cut(s)	54
BstAUI	TGTACA	1 cut(s)	519
BstDEI	CTNAG	5 cut(s)	72, 206, 325, 402, 489
BstF5I	GGATG	1 cut(s)	391
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	5 cut(s)	24, 130, 189, 282, 450
BstMAI	GTCTC	2 cut(s)	331, 497
BstMBI	GATC	5 cut(s)	21, 127, 186, 279, 447
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstX2I	RGATCY	2 cut(s)	21, 127
BstYI	RGATCY	2 cut(s)	21, 127
BtsCI	GGATG	1 cut(s)	391
BtsIMutI	CAGTG	2 cut(s)	271, 486
CciI	TCATGA	1 cut(s)	450
CfoI	GCGC	1 cut(s)	309
Csp6I	GTAC	3 cut(s)	493, 520, 556
CviAII	CATG	4 cut(s)	304, 368, 376, 451
CviQI	GTAC	3 cut(s)	493, 520, 556
DdeI	CTNAG	5 cut(s)	72, 206, 325, 402, 489
DpnI	GATC	5 cut(s)	23, 129, 188, 281, 449
DpnII	GATC	5 cut(s)	21, 127, 186, 279, 447
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	331
Eco88I	CYCGRG	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	102
FaeI	CATG	4 cut(s)	307, 371, 379, 454
FaiI	YATR	5 cut(s)	305, 369, 377, 452, 566
FatI	CATG	4 cut(s)	303, 367, 375, 450
FokI	GGATG	1 cut(s)	398
GlaI	GCGC	1 cut(s)	308
GsuI	CTGGAG	1 cut(s)	521
HhaI	GCGC	1 cut(s)	309
Hin1II	CATG	4 cut(s)	307, 371, 379, 454
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HindIII	AAGCTT	2 cut(s)	213, 570
HinfI	GANTC	2 cut(s)	226, 300
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	4 cut(s)	15, 153, 245, 336
Hpy188III	TCNNGA	2 cut(s)	434, 451
Hpy8I	GTNNAC	1 cut(s)	520
HpyAV	CCTTC	1 cut(s)	448
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	5 cut(s)	72, 206, 325, 402, 489
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	4 cut(s)	307, 371, 379, 454
HspAI	GCGC	1 cut(s)	307
Kzo9I	GATC	5 cut(s)	21, 127, 186, 279, 447
LguI	GCTCTTC	1 cut(s)	54
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	5 cut(s)	23, 129, 188, 281, 449
MboI	GATC	5 cut(s)	21, 127, 186, 279, 447
MboII	GAAGA	4 cut(s)	71, 224, 268, 309
MflI	RGATCY	2 cut(s)	21, 127
MnlI	CCTC	2 cut(s)	201, 376
MroXI	GAANNNNTTC	2 cut(s)	215, 260
MseI	TTAA	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	329
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	398
NdeII	GATC	5 cut(s)	21, 127, 186, 279, 447
NlaIII	CATG	4 cut(s)	307, 371, 379, 454
NlaIV	GGNNCC	1 cut(s)	442
PaeR7I	CTCGAG	1 cut(s)	380
PagI	TCATGA	1 cut(s)	450
PciSI	GCTCTTC	1 cut(s)	54
PdmI	GAANNNNTTC	2 cut(s)	215, 260
PfeI	GAWTC	2 cut(s)	226, 300
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	442
PspXI	VCTCGAGB	1 cut(s)	380
PsuI	RGATCY	2 cut(s)	21, 127
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	3 cut(s)	494, 521, 557
RsaNI	GTAC	3 cut(s)	493, 520, 556
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	138
Sau3AI	GATC	5 cut(s)	21, 127, 186, 279, 447
ScrFI	CCNGG	1 cut(s)	104
Sfr274I	CTCGAG	1 cut(s)	380
SlaI	CTCGAG	1 cut(s)	380
SmlI	CTYRAG	2 cut(s)	251, 380
SmoI	CTYRAG	2 cut(s)	251, 380
SsiI	CCGC	2 cut(s)	172, 220
StyD4I	CCNGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	431
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	2 cut(s)	381, 552
TatI	WGTACW	2 cut(s)	492, 519
TfiI	GAWTC	2 cut(s)	226, 300
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	2 cut(s)	271, 493
TspDTI	ATGAA	3 cut(s)	218, 384, 467
TspRI	CASTG	2 cut(s)	271, 493
XhoI	CTCGAG	1 cut(s)	380
XmnI	GAANNNNTTC	2 cut(s)	215, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.