Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Forward (+)

22796045 .. 22797271

Gene Structure 1227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g19360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAGAGCTGGTATGTCCACTAATACCAAAACCCTAAGTAGCAATTGTTCCGGCGAAGACAACAGTGAGCTTAGGAGAGGGCCATGGACTCTTGAAGAAGACCGTCTTCTTATTCAGTACATAGAGCGCCATGGCGAAGGCCAGTGGAACTTGCTTGCCAAACGTTCAGGATTAAGGAGAACTGGCAAAAGTTGCAGATTGAGATGGTTGAATTATCTGAAACCCGACGTTAAGCGAGGCAATCTTAGTCCTGAAGAACAGCTCTTGATTCTTGACCTCCACTCAAAAATGGGCAATAGGTGGTCGAAAATCGCGCAGTATTTACCGGGAAGAACAGACAATGAAATCAAGAACTATTGGAGAACAAGGATGCACAAACAAGCCCGGCATCTCAACATCGACATGAAAAGCAGAGAGTTTCAAAATATGATAAGGTGCTTTTGGATGCCTAGGTTGAAGCAGAAGATAGGAGGAGAAACATTGATTTCTTCAGCTGTGTTAAACCAAAATCCTACGATTTCGCAGCCTCTCGAAAACAACACTGTCCAACATCTAACGGCAACAGTATCCCAGTCACCACAAATCCTAGTGCTGGAAGAAATTAATATGAGTGGAACAATGTACAATTTGGATGTCGAAAAGCAAAACACAGAGGCAGATTACTGCACAAGTTCATGCATTTTCCCTTCAGAACCAGTGGACATGTCGAAGACTGCGCAATTTCCGGAATGCCCTCCTTTCTATTGTGGTGACAACAGTGGCAACGACATGGAATCCTTCAAACTGCAGGAATCTGTGTCAGCAGACTCAGCACCAAATTTCCCTGGAAATTCCGCCGGCGATTGCTACGTGGCAGAAAACAACTGGTTTGACAGTGATTTTTTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

297

Amino Acids

33.93

Weight (kDa)

6.25

Isoelectric Point (pI)

68.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	26 - 73	2.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	29 - 87	4.3e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	79 - 122	5e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	83 - 129	1.7e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	717
AccII	CGCG	1 cut(s)	314
AccIII	TCCGGA	1 cut(s)	724
AciI	CCGC	1 cut(s)	834
AclI	AACGTT	1 cut(s)	163
AcsI	RAATTY	2 cut(s)	817, 829
AcuI	CTGAAG	3 cut(s)	273, 474, 672
AfaI	GTAC	2 cut(s)	119, 623
AfiI	CCNNNNNNNGG	1 cut(s)	592
AflIII	ACRYGT	1 cut(s)	702
AgsI	TTSAA	5 cut(s)	95, 211, 422, 457, 781
AjnI	CCWGG	1 cut(s)	823
AluBI	AGCT	4 cut(s)	8, 70, 262, 494
AluI	AGCT	4 cut(s)	8, 70, 262, 494
Aor13HI	TCCGGA	1 cut(s)	724
AoxI	GGCC	2 cut(s)	80, 139
ApeKI	GCWGC	1 cut(s)	523
ApoI	RAATTY	2 cut(s)	817, 829
AseI	ATTAAT	1 cut(s)	603
AspA2I	CCTAGG	1 cut(s)	449
AspLEI	GCGC	3 cut(s)	129, 316, 718
AspS9I	GGNCC	1 cut(s)	80
AsuC2I	CCSGG	2 cut(s)	327, 385
AsuHPI	GGTGA	2 cut(s)	567, 761
AvrII	CCTAGG	1 cut(s)	449
BbsI	GAAGAC	4 cut(s)	63, 98, 105, 716
BbvI	GCAGC	1 cut(s)	535
BccI	CCATC	1 cut(s)	198
BceAI	ACGGC	1 cut(s)	573
BciT130I	CCWGG	1 cut(s)	825
BciVI	GTATCC	1 cut(s)	577
BcnI	CCSGG	2 cut(s)	327, 385
BfaI	CTAG	2 cut(s)	450, 587
BfmI	CTRYAG	1 cut(s)	785
BfoI	RGCGCY	1 cut(s)	130
BfuI	GTATCC	1 cut(s)	577
BisI	GCNGC	1 cut(s)	524
BlnI	CCTAGG	1 cut(s)	449
BlsI	GCNGC	1 cut(s)	525
Bme1390I	CCNGG	3 cut(s)	327, 385, 825
BmgT120I	GGNCC	1 cut(s)	80
BmrFI	CCNGG	3 cut(s)	327, 385, 825
BmrI	ACTGGG	1 cut(s)	565
BmsI	GCATC	3 cut(s)	360, 397, 435
BmuI	ACTGGG	1 cut(s)	565
BpiI	GAAGAC	4 cut(s)	63, 98, 105, 716
Bpu10I	CCTNAGC	1 cut(s)	71
BpuMI	CCSGG	2 cut(s)	327, 385
BsaAI	YACGTR	1 cut(s)	850
BsaJI	CCNNGG	4 cut(s)	83, 130, 449, 823
BsaWI	WCCGGW	1 cut(s)	724
Bsc4I	CCNNNNNNNGG	1 cut(s)	592
Bse118I	RCCGGY	1 cut(s)	836
Bse1I	ACTGG	5 cut(s)	142, 187, 571, 695, 869
BseAI	TCCGGA	1 cut(s)	724
BseBI	CCWGG	1 cut(s)	825
BseDI	CCNNGG	4 cut(s)	83, 130, 449, 823
BseGI	GGATG	3 cut(s)	375, 450, 637
BseLI	CCNNNNNNNGG	1 cut(s)	592
BseMII	CTCAG	1 cut(s)	822
BseNI	ACTGG	5 cut(s)	142, 187, 571, 695, 869
BseRI	GAGGAG	1 cut(s)	486
BseXI	GCAGC	1 cut(s)	535
BsgI	GTGCAG	1 cut(s)	649
Bsh1236I	CGCG	1 cut(s)	314
BshFI	GGCC	2 cut(s)	82, 141
BsiSI	CCGG	5 cut(s)	51, 326, 385, 725, 837
BslI	CCNNNNNNNGG	1 cut(s)	592
BsmI	GAATGC	1 cut(s)	734
BsnI	GGCC	2 cut(s)	82, 141
Bsp13I	TCCGGA	1 cut(s)	724
Bsp1407I	TGTACA	1 cut(s)	621
Bsp19I	CCATGG	2 cut(s)	83, 130
BspACI	CCGC	1 cut(s)	834
BspANI	GGCC	2 cut(s)	82, 141
BspCNI	CTCAG	1 cut(s)	821
BspEI	TCCGGA	1 cut(s)	724
BspFNI	CGCG	1 cut(s)	314
BspMAI	CTGCAG	1 cut(s)	789
BsrFI	RCCGGY	1 cut(s)	836
BsrGI	TGTACA	1 cut(s)	621
BsrI	ACTGG	5 cut(s)	142, 187, 571, 695, 869
BssAI	RCCGGY	1 cut(s)	836
BssECI	CCNNGG	4 cut(s)	83, 130, 449, 823
BssT1I	CCWWGG	3 cut(s)	83, 130, 449
Bst2UI	CCWGG	1 cut(s)	825
Bst4CI	ACNGT	6 cut(s)	65, 104, 544, 565, 758, 875
BstAPI	GCANNNNNTGC	1 cut(s)	192
BstAUI	TGTACA	1 cut(s)	621
BstBAI	YACGTR	1 cut(s)	850
BstC8I	GCNNGC	2 cut(s)	156, 838
BstDEI	CTNAG	4 cut(s)	35, 71, 245, 808
BstDSI	CCRYGG	2 cut(s)	83, 130
BstF5I	GGATG	3 cut(s)	375, 450, 637
BstFNI	CGCG	1 cut(s)	314
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	3 cut(s)	129, 316, 718
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 809
BstNI	CCWGG	1 cut(s)	825
BstNSI	RCATGY	1 cut(s)	706
BstSCI	CCNGG	3 cut(s)	325, 383, 823
BstSFI	CTRYAG	1 cut(s)	785
BstUI	CGCG	1 cut(s)	314
BstV1I	GCAGC	1 cut(s)	535
BstV2I	GAAGAC	4 cut(s)	63, 98, 105, 716
BsuI	GTATCC	1 cut(s)	577
BsuRI	GGCC	2 cut(s)	82, 141
BtgI	CCRYGG	2 cut(s)	83, 130
BtsCI	GGATG	3 cut(s)	375, 450, 637
BtsIMutI	CAGTG	6 cut(s)	70, 149, 540, 702, 763, 880
Cac8I	GCNNGC	2 cut(s)	156, 838
CfoI	GCGC	3 cut(s)	129, 316, 718
Cfr10I	RCCGGY	1 cut(s)	836
Cfr13I	GGNCC	1 cut(s)	80
Csp6I	GTAC	2 cut(s)	118, 622
CviAII	CATG	7 cut(s)	84, 131, 403, 675, 703, 769, 886
CviJI	RGCY	8 cut(s)	8, 70, 82, 141, 262, 383, 494, 526
CviKI_1	RGCY	8 cut(s)	8, 70, 82, 141, 262, 383, 494, 526
CviQI	GTAC	2 cut(s)	118, 622
DdeI	CTNAG	4 cut(s)	35, 71, 245, 808
EciI	GGCGGA	1 cut(s)	823
Eco130I	CCWWGG	3 cut(s)	83, 130, 449
Eco57I	CTGAAG	3 cut(s)	273, 474, 672
EcoRII	CCWGG	1 cut(s)	823
EcoT14I	CCWWGG	3 cut(s)	83, 130, 449
EcoT22I	ATGCAT	1 cut(s)	680
ErhI	CCWWGG	3 cut(s)	83, 130, 449
FaeI	CATG	7 cut(s)	87, 134, 406, 678, 706, 772, 889
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FatI	CATG	7 cut(s)	83, 130, 402, 674, 702, 768, 885
Fnu4HI	GCNGC	1 cut(s)	524
FokI	GGATG	3 cut(s)	382, 457, 644
Fsp4HI	GCNGC	1 cut(s)	524
FspBI	CTAG	2 cut(s)	450, 587
FspI	TGCGCA	1 cut(s)	717
GlaI	GCGC	3 cut(s)	128, 315, 717
GluI	GCNGC	1 cut(s)	524
HaeII	RGCGCY	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	82, 141
HapII	CCGG	5 cut(s)	51, 326, 385, 725, 837
HhaI	GCGC	3 cut(s)	129, 316, 718
Hin1II	CATG	7 cut(s)	87, 134, 406, 678, 706, 772, 889
Hin6I	GCGC	3 cut(s)	127, 314, 716
HinP1I	GCGC	3 cut(s)	127, 314, 716
HinfI	GANTC	5 cut(s)	88, 268, 773, 791, 806
HpaII	CCGG	5 cut(s)	51, 326, 385, 725, 837
HphI	GGTGA	2 cut(s)	567, 761
Hpy166II	GTNNAC	2 cut(s)	18, 700
Hpy188I	TCNGA	2 cut(s)	219, 691
Hpy188III	TCNNGA	8 cut(s)	92, 168, 251, 265, 272, 349, 530, 725
Hpy8I	GTNNAC	2 cut(s)	18, 700
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	3 cut(s)	131, 696, 787
HpyCH4III	ACNGT	6 cut(s)	65, 104, 544, 565, 758, 875
HpyCH4IV	ACGT	3 cut(s)	163, 228, 849
HpyCH4V	TGCA	5 cut(s)	195, 373, 666, 678, 787
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 809
HpyF3I	CTNAG	4 cut(s)	35, 71, 245, 808
HpySE526I	ACGT	3 cut(s)	163, 228, 849
Hsp92II	CATG	7 cut(s)	87, 134, 406, 678, 706, 772, 889
HspAI	GCGC	3 cut(s)	127, 314, 716
Kpn2I	TCCGGA	1 cut(s)	724
KroI	GCCGGC	1 cut(s)	836
KroNI	GCCGGC	1 cut(s)	838
Lsp1109I	GCAGC	1 cut(s)	535
LweI	GCATC	3 cut(s)	360, 397, 435
MaeI	CTAG	2 cut(s)	450, 587
MaeII	ACGT	3 cut(s)	163, 228, 849
MaeIII	GTNAC	2 cut(s)	573, 749
MfeI	CAATTG	1 cut(s)	43
MluCI	AATT	7 cut(s)	43, 211, 600, 625, 719, 817, 829
MlyI	GAGTC	2 cut(s)	82, 800
MmeI	TCCRAC	1 cut(s)	571
MnlI	CCTC	7 cut(s)	71, 230, 287, 464, 537, 646, 744
Mph1103I	ATGCAT	1 cut(s)	680
MreI	CGCCGGCG	1 cut(s)	836
MroI	TCCGGA	1 cut(s)	724
MroNI	GCCGGC	1 cut(s)	836
MseI	TTAA	4 cut(s)	173, 231, 500, 603
MslI	CAYNNNNRTG	1 cut(s)	401
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	5 cut(s)	51, 326, 385, 725, 837
MspR9I	CCNGG	3 cut(s)	327, 385, 825
MunI	CAATTG	1 cut(s)	43
Mva1269I	GAATGC	1 cut(s)	734
MvaI	CCWGG	1 cut(s)	825
MvnI	CGCG	1 cut(s)	314
MwoI	GCNNNNNNNGC	2 cut(s)	192, 809
NaeI	GCCGGC	1 cut(s)	838
NciI	CCSGG	2 cut(s)	327, 385
NcoI	CCATGG	2 cut(s)	83, 130
NgoMIV	GCCGGC	1 cut(s)	836
NlaIII	CATG	7 cut(s)	87, 134, 406, 678, 706, 772, 889
NmuCI	GTSAC	2 cut(s)	573, 749
NsbI	TGCGCA	1 cut(s)	717
NsiI	ATGCAT	1 cut(s)	680
NspI	RCATGY	1 cut(s)	706
PciI	ACATGT	1 cut(s)	702
PctI	GAATGC	1 cut(s)	734
PdiI	GCCGGC	1 cut(s)	838
PfeI	GAWTC	3 cut(s)	268, 773, 791
PkrI	GCNGC	1 cut(s)	525
PleI	GAGTC	2 cut(s)	82, 800
PpsI	GAGTC	2 cut(s)	82, 800
Ppu21I	YACGTR	1 cut(s)	850
PscI	ACATGT	1 cut(s)	702
PshBI	ATTAAT	1 cut(s)	603
Psp1406I	AACGTT	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	823
PspGI	CCWGG	1 cut(s)	823
PspPI	GGNCC	1 cut(s)	80
PsrI	GAACNNNNNNTAC	2 cut(s)	31, 63
PstI	CTGCAG	1 cut(s)	789
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	2 cut(s)	119, 623
RsaNI	GTAC	2 cut(s)	118, 622
RseI	CAYNNNNRTG	1 cut(s)	401
SaqAI	TTAA	4 cut(s)	173, 231, 500, 603
SatI	GCNGC	1 cut(s)	524
Sau96I	GGNCC	1 cut(s)	80
SchI	GAGTC	2 cut(s)	82, 800
ScrFI	CCNGG	3 cut(s)	327, 385, 825
SfaNI	GCATC	3 cut(s)	360, 397, 435
SfcI	CTRYAG	1 cut(s)	785
SgrAI	CRCCGGYG	1 cut(s)	836
SmiMI	CAYNNNNRTG	1 cut(s)	401
Sse9I	AATT	7 cut(s)	43, 211, 600, 625, 719, 817, 829
SsiI	CCGC	1 cut(s)	834
SspMI	CTAG	2 cut(s)	450, 587
StyD4I	CCNGG	3 cut(s)	325, 383, 823
StyI	CCWWGG	3 cut(s)	83, 130, 449
TaaI	ACNGT	6 cut(s)	65, 104, 544, 565, 758, 875
TaiI	ACGT	3 cut(s)	166, 231, 852
TaqI	TCGA	5 cut(s)	305, 399, 531, 636, 707
TasI	AATT	7 cut(s)	43, 211, 600, 625, 719, 817, 829
TatI	WGTACW	2 cut(s)	117, 621
TfiI	GAWTC	3 cut(s)	268, 773, 791
Tru1I	TTAA	4 cut(s)	173, 231, 500, 603
Tru9I	TTAA	4 cut(s)	173, 231, 500, 603
TscAI	CASTG	6 cut(s)	70, 149, 547, 702, 763, 880
TseFI	GTSAC	2 cut(s)	573, 749
TseI	GCWGC	1 cut(s)	523
Tsp45I	GTSAC	2 cut(s)	573, 749
TspDTI	ATGAA	4 cut(s)	357, 419, 663, 874
TspRI	CASTG	6 cut(s)	70, 149, 547, 702, 763, 880
VspI	ATTAAT	1 cut(s)	603
XapI	RAATTY	2 cut(s)	817, 829
XceI	RCATGY	1 cut(s)	706
XmaJI	CCTAGG	1 cut(s)	449
XspI	CTAG	2 cut(s)	450, 587
Zsp2I	ATGCAT	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.