Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Forward (+)

30870058 .. 30871496

Gene Structure 1439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1227500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTCGACTAAGACTAAAACCCTAAGTAGTAGTTCTGGAGAAGACGATGGCGAGCTTAGGAGAGGGCCATGGACTCTTGAAGAAGACTCTCTTCTTATTCAGTACATAGCTCGTCACGGCGAAGGCCGATGGAACTTGCTAGCCAAACGTTCAGGATTAAGGAGAACTGGCAAAAGTTGCAGATTGAGATGGTTGAATTATCTGAAACCCGACGTTAAGCGAGGAAATCTTAGTCCGGAAGAACAGCTCTTGATTCTTGACCTCCACTCAAAAATGGGAAACAGGTGGTCGAAAATCGCGCAATATTTACCGGGAAGAACAGACAATGAAATCAAGAACTACTGGAGAACACGGGTGCAGAAACAAGCCCGGCATCTCCGAATCGACACGAGCAGCGTAGAGTTTCAAAACATGATAAGGTGCTATTGGATGCCAAGGTTGCAGCAGAAGATAGGAGGAGAAATATCGACTTCTTCAGCTGTGTTAAACCAAAACCATACCATTTCGCAGCCTCTCGAACAGAACACCTTCCCACATTTTACAGCCACAATATCGCCGCCACCACAAATTCTAGTGCAGGAAGAAATTAATATGAGTGCAACAATGTACAATTTAGATGTCGAAAAGCAGAACACAAAGGCAGAGTACTGCACAGGTCCATACATTTTTCCTTCAGAGCCAATGGACATGTCGAAGACTGTGCAGTTTCCGGAATGCCCTCCTTTCCATTGCGGTGACAACAATGGCTATGACACGGAATCCTTCAATCTGCAGGAAACTGTGTCAGCGGACTCAGCACCAAATTTTCCAGGAAATTGTGCCAGCGATTGCTACGTGGCAGAAACCAACTGGTTTGACAGTGATTTGTTATGTAGCATATGGAACACGGACGAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

300

Amino Acids

34.3

Weight (kDa)

5.76

Isoelectric Point (pI)

65.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	21 - 68	2.3e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	24 - 81	3.4e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	74 - 117	5.5e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	78 - 122	3.3e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	299
AccIII	TCCGGA	2 cut(s)	235, 709
AciI	CCGC	3 cut(s)	557, 732, 788
AclI	AACGTT	1 cut(s)	148
AcsI	RAATTY	2 cut(s)	567, 802
AcuI	CTGAAG	2 cut(s)	459, 657
AfaI	GTAC	3 cut(s)	104, 608, 647
AflIII	ACRYGT	1 cut(s)	687
AgsI	TTSAA	4 cut(s)	80, 196, 407, 766
AjnI	CCWGG	1 cut(s)	808
AluBI	AGCT	4 cut(s)	55, 110, 247, 479
AluI	AGCT	4 cut(s)	55, 110, 247, 479
Aor13HI	TCCGGA	2 cut(s)	235, 709
AoxI	GGCC	2 cut(s)	65, 124
ApeKI	GCWGC	3 cut(s)	393, 442, 508
ApoI	RAATTY	2 cut(s)	567, 802
AseI	ATTAAT	1 cut(s)	588
Asp700I	GAANNNNTTC	1 cut(s)	527
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	2 cut(s)	65, 656
AsuC2I	CCSGG	2 cut(s)	312, 370
AsuHPI	GGTGA	1 cut(s)	746
AsuNHI	GCTAGC	1 cut(s)	139
AvaII	GGWCC	1 cut(s)	656
BauI	CACGAG	1 cut(s)	388
BbsI	GAAGAC	3 cut(s)	48, 90, 701
BbvI	GCAGC	3 cut(s)	405, 454, 520
BccI	CCATC	3 cut(s)	41, 123, 183
BceAI	ACGGC	1 cut(s)	133
BcgI	CGANNNNNNTGC	2 cut(s)	682, 716
BciT130I	CCWGG	1 cut(s)	810
BcnI	CCSGG	2 cut(s)	312, 370
BfaI	CTAG	2 cut(s)	140, 572
BfmI	CTRYAG	1 cut(s)	770
BisI	GCNGC	4 cut(s)	394, 443, 509, 557
BlsI	GCNGC	4 cut(s)	395, 444, 510, 558
BmcAI	AGTACT	1 cut(s)	647
Bme1390I	CCNGG	3 cut(s)	312, 370, 810
Bme18I	GGWCC	1 cut(s)	656
BmgT120I	GGNCC	2 cut(s)	65, 656
BmrFI	CCNGG	3 cut(s)	312, 370, 810
BmsI	GCATC	2 cut(s)	382, 420
BmtI	GCTAGC	1 cut(s)	143
BpiI	GAAGAC	3 cut(s)	48, 90, 701
BpmI	CTGGAG	2 cut(s)	57, 364
Bpu10I	CCTNAGC	1 cut(s)	56
BpuMI	CCSGG	2 cut(s)	312, 370
BsaAI	YACGTR	1 cut(s)	835
BsaJI	CCNNGG	2 cut(s)	68, 434
BsaWI	WCCGGW	2 cut(s)	235, 709
Bse1I	ACTGG	3 cut(s)	172, 347, 854
Bse3DI	GCAATG	1 cut(s)	727
BseAI	TCCGGA	2 cut(s)	235, 709
BseBI	CCWGG	1 cut(s)	810
BseDI	CCNNGG	2 cut(s)	68, 434
BseGI	GGATG	1 cut(s)	435
BseMI	GCAATG	1 cut(s)	727
BseMII	CTCAG	1 cut(s)	807
BseNI	ACTGG	3 cut(s)	172, 347, 854
BseRI	GAGGAG	1 cut(s)	471
BseXI	GCAGC	3 cut(s)	405, 454, 520
BsgI	GTGCAG	4 cut(s)	377, 596, 634, 722
Bsh1236I	CGCG	1 cut(s)	299
BshFI	GGCC	2 cut(s)	67, 126
BsiSI	CCGG	4 cut(s)	236, 311, 370, 710
BsmI	GAATGC	1 cut(s)	719
BsnI	GGCC	2 cut(s)	67, 126
Bsp13I	TCCGGA	2 cut(s)	235, 709
Bsp1407I	TGTACA	1 cut(s)	606
Bsp19I	CCATGG	1 cut(s)	68
BspACI	CCGC	3 cut(s)	557, 732, 788
BspANI	GGCC	2 cut(s)	67, 126
BspCNI	CTCAG	1 cut(s)	806
BspEI	TCCGGA	2 cut(s)	235, 709
BspFNI	CGCG	1 cut(s)	299
BspMAI	CTGCAG	1 cut(s)	774
BspOI	GCTAGC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	727
BsrGI	TGTACA	1 cut(s)	606
BsrI	ACTGG	3 cut(s)	172, 347, 854
BssECI	CCNNGG	2 cut(s)	68, 434
BssSI	CACGAG	1 cut(s)	388
BssT1I	CCWWGG	2 cut(s)	68, 434
Bst2BI	CACGAG	1 cut(s)	388
Bst2UI	CCWGG	1 cut(s)	810
Bst4CI	ACNGT	3 cut(s)	700, 781, 860
Bst6I	CTCTTC	1 cut(s)	96
BstAPI	GCANNNNNTGC	1 cut(s)	177
BstAUI	TGTACA	1 cut(s)	606
BstBAI	YACGTR	1 cut(s)	835
BstC8I	GCNNGC	3 cut(s)	53, 141, 823
BstDEI	CTNAG	5 cut(s)	9, 23, 56, 230, 793
BstDSI	CCRYGG	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	435
BstFNI	CGCG	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	3 cut(s)	177, 439, 794
BstNI	CCWGG	1 cut(s)	810
BstNSI	RCATGY	1 cut(s)	691
BstSCI	CCNGG	3 cut(s)	310, 368, 808
BstSFI	CTRYAG	1 cut(s)	770
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	3 cut(s)	405, 454, 520
BstV2I	GAAGAC	3 cut(s)	48, 90, 701
BsuRI	GGCC	2 cut(s)	67, 126
BtgI	CCRYGG	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	435
BtsIMutI	CAGTG	1 cut(s)	865
Cac8I	GCNNGC	3 cut(s)	53, 141, 823
CfoI	GCGC	1 cut(s)	301
Cfr13I	GGNCC	2 cut(s)	65, 656
Csp6I	GTAC	3 cut(s)	103, 607, 646
CviAII	CATG	3 cut(s)	69, 412, 688
CviQI	GTAC	3 cut(s)	103, 607, 646
DdeI	CTNAG	5 cut(s)	9, 23, 56, 230, 793
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco130I	CCWWGG	2 cut(s)	68, 434
Eco47I	GGWCC	1 cut(s)	656
Eco57I	CTGAAG	2 cut(s)	459, 657
EcoRII	CCWGG	1 cut(s)	808
EcoT14I	CCWWGG	2 cut(s)	68, 434
ErhI	CCWWGG	2 cut(s)	68, 434
FaeI	CATG	3 cut(s)	72, 415, 691
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FatI	CATG	3 cut(s)	68, 411, 687
FauNDI	CATATG	1 cut(s)	878
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	4 cut(s)	394, 443, 509, 557
FokI	GGATG	1 cut(s)	442
Fsp4HI	GCNGC	4 cut(s)	394, 443, 509, 557
FspBI	CTAG	2 cut(s)	140, 572
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	4 cut(s)	394, 443, 509, 557
GsuI	CTGGAG	2 cut(s)	57, 364
HaeIII	GGCC	2 cut(s)	67, 126
HapII	CCGG	4 cut(s)	236, 311, 370, 710
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	3 cut(s)	72, 415, 691
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	6 cut(s)	73, 86, 253, 381, 758, 791
HpaII	CCGG	4 cut(s)	236, 311, 370, 710
HphI	GGTGA	1 cut(s)	746
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	204, 380, 676
Hpy188III	TCNNGA	9 cut(s)	36, 77, 153, 236, 250, 257, 334, 515, 710
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	4 cut(s)	116, 538, 681, 772
HpyCH4III	ACNGT	3 cut(s)	700, 781, 860
HpyCH4IV	ACGT	3 cut(s)	148, 213, 834
HpyCH4V	TGCA	8 cut(s)	180, 358, 442, 577, 599, 651, 703, 772
HpyF10VI	GCNNNNNNNGC	3 cut(s)	177, 439, 794
HpyF3I	CTNAG	5 cut(s)	9, 23, 56, 230, 793
HpySE526I	ACGT	3 cut(s)	148, 213, 834
Hsp92II	CATG	3 cut(s)	72, 415, 691
HspAI	GCGC	1 cut(s)	299
Kpn2I	TCCGGA	2 cut(s)	235, 709
Lsp1109I	GCAGC	3 cut(s)	405, 454, 520
LweI	GCATC	2 cut(s)	382, 420
MaeI	CTAG	2 cut(s)	140, 572
MaeII	ACGT	3 cut(s)	148, 213, 834
MaeIII	GTNAC	2 cut(s)	113, 734
MluCI	AATT	6 cut(s)	196, 567, 585, 610, 802, 814
MlyI	GAGTC	3 cut(s)	67, 80, 785
MnlI	CCTC	6 cut(s)	56, 215, 272, 449, 522, 729
MroI	TCCGGA	2 cut(s)	235, 709
MroXI	GAANNNNTTC	1 cut(s)	527
MseI	TTAA	4 cut(s)	158, 216, 485, 588
MslI	CAYNNNNRTG	1 cut(s)	732
MspA1I	CMGCKG	2 cut(s)	479, 788
MspI	CCGG	4 cut(s)	236, 311, 370, 710
MspR9I	CCNGG	3 cut(s)	312, 370, 810
Mva1269I	GAATGC	1 cut(s)	719
MvaI	CCWGG	1 cut(s)	810
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	3 cut(s)	177, 439, 794
NciI	CCSGG	2 cut(s)	312, 370
NcoI	CCATGG	1 cut(s)	68
NdeI	CATATG	1 cut(s)	878
NheI	GCTAGC	1 cut(s)	139
NlaIII	CATG	3 cut(s)	72, 415, 691
NmuCI	GTSAC	2 cut(s)	113, 734
NspI	RCATGY	1 cut(s)	691
PciI	ACATGT	1 cut(s)	687
PctI	GAATGC	1 cut(s)	719
PdmI	GAANNNNTTC	1 cut(s)	527
PfeI	GAWTC	3 cut(s)	253, 381, 758
PfoI	TCCNGGA	1 cut(s)	808
PkrI	GCNGC	4 cut(s)	395, 444, 510, 558
PleI	GAGTC	3 cut(s)	67, 80, 785
PpsI	GAGTC	3 cut(s)	67, 80, 785
Ppu21I	YACGTR	1 cut(s)	835
PscI	ACATGT	1 cut(s)	687
PshBI	ATTAAT	1 cut(s)	588
Psp1406I	AACGTT	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	808
PspGI	CCWGG	1 cut(s)	808
PspPI	GGNCC	2 cut(s)	65, 656
PstI	CTGCAG	1 cut(s)	774
PvuII	CAGCTG	1 cut(s)	479
RsaI	GTAC	3 cut(s)	104, 608, 647
RsaNI	GTAC	3 cut(s)	103, 607, 646
RseI	CAYNNNNRTG	1 cut(s)	732
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	4 cut(s)	158, 216, 485, 588
SatI	GCNGC	4 cut(s)	394, 443, 509, 557
Sau96I	GGNCC	2 cut(s)	65, 656
ScaI	AGTACT	1 cut(s)	647
SchI	GAGTC	3 cut(s)	67, 80, 785
ScrFI	CCNGG	3 cut(s)	312, 370, 810
SfaNI	GCATC	2 cut(s)	382, 420
SfcI	CTRYAG	1 cut(s)	770
SinI	GGWCC	1 cut(s)	656
SmiMI	CAYNNNNRTG	1 cut(s)	732
Sse9I	AATT	6 cut(s)	196, 567, 585, 610, 802, 814
SsiI	CCGC	3 cut(s)	557, 732, 788
SspI	AATATT	1 cut(s)	305
SspMI	CTAG	2 cut(s)	140, 572
StyD4I	CCNGG	3 cut(s)	310, 368, 808
StyI	CCWWGG	2 cut(s)	68, 434
TaaI	ACNGT	3 cut(s)	700, 781, 860
TaiI	ACGT	3 cut(s)	151, 216, 837
TaqI	TCGA	7 cut(s)	5, 290, 384, 467, 516, 621, 692
TasI	AATT	6 cut(s)	196, 567, 585, 610, 802, 814
TatI	WGTACW	3 cut(s)	102, 606, 645
TauI	GCSGC	1 cut(s)	559
TfiI	GAWTC	3 cut(s)	253, 381, 758
Tru1I	TTAA	4 cut(s)	158, 216, 485, 588
Tru9I	TTAA	4 cut(s)	158, 216, 485, 588
TscAI	CASTG	1 cut(s)	865
TseFI	GTSAC	2 cut(s)	113, 734
TseI	GCWGC	3 cut(s)	393, 442, 508
Tsp45I	GTSAC	2 cut(s)	113, 734
TspDTI	ATGAA	1 cut(s)	342
TspGWI	ACGGA	1 cut(s)	770
TspRI	CASTG	1 cut(s)	865
VpaK11BI	GGWCC	1 cut(s)	656
VspI	ATTAAT	1 cut(s)	588
XapI	RAATTY	2 cut(s)	567, 802
XceI	RCATGY	1 cut(s)	691
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	527
XspI	CTAG	2 cut(s)	140, 572
ZrmI	AGTACT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.