Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Reverse (-)

6752099 .. 6753733

Gene Structure 1635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g11930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTCTACTAACACTAAAAGCTTCAGCAGCAGTTCCAGTGAAGATGACAATGAACTTAGGAGAGGGCCATGGACTCTTGAAGAAGACACTCTTCTGATTCAATACATAGCTCGTCATGGTGAAGGCCGATGGAATCTGCTAGCAAATCGTGCAGGATTGAGAAGAACTGGGAAGAGTTGCAGATTGAGATGGTTAAACTATCTGAAACCAGATGTTAAGCGTGGAAACCTTACTCCAGAAGAACAGCTCATGATTCTTGACCTTCACTCCAAGTGGGGAAATAGGTGGTCGAAAATTGCGCAATACTTACCTGGAAGAACAGACAATGAAATCAAGAACTACTGGAGAACTAGAGTGCAGAAACAAGCAAGACATCTTAAGATTGATACCAACAGCACAGAGTTTCAGAATATCATTAGGTGCTTTTGGATGCCTAGATTGCTGCAGAAGATAGGAGACCAAAACCAATTAGCTTCTTCTCATCAGCATTCAATAACAGCACCATCACCACAACTGCAATTTACTCATGAGCAAGGAGCTGTTAACATGAGCGGATATGAATACAACTTGGACATCGAAAAGCAGAACACAGAATGCATTTTGCCATCAGAGTTACCAATGGAGACGCCAAACACTTCTCAATTTTCAGAATATCATACTTCTAGTCCTTTTGGTGGAGCCATGGTGCACAATGATCACAATGTATACACCAATGACCATGACATGGAAGTCTCCAACTTTGGGAATTCTGCTGCTGCTGAAAGTTACTATGTGCCAGAAAGTGAAAGCAACTGGCTTGAAACTGATTTTTCATGTAGCATGTGGAACATGGATGAATTATTGCAAAGGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

285

Amino Acids

32.99

Weight (kDa)

5.82

Isoelectric Point (pI)

60.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	21 - 68	1.9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	24 - 81	9.4e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	74 - 117	5.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	78 - 124	2.7e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	728
Acc16I	TGCGCA	1 cut(s)	300
AccB7I	CCANNNNNTGG	1 cut(s)	724
AccBSI	CCGCTC	1 cut(s)	552
AccI	GTMKAC	2 cut(s)	5, 705
AciI	CCGC	1 cut(s)	552
AcsI	RAATTY	1 cut(s)	745
AcuI	CTGAAG	1 cut(s)	7
AcyI	GRCGYC	1 cut(s)	626
AfiI	CCNNNNNNNGG	3 cut(s)	674, 724, 741
AflII	CTTAAG	1 cut(s)	377
AgsI	TTSAA	4 cut(s)	80, 101, 492, 800
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	5 cut(s)	21, 110, 247, 473, 539
AluI	AGCT	5 cut(s)	21, 110, 247, 473, 539
Alw21I	GWGCWC	1 cut(s)	690
Alw26I	GTCTC	3 cut(s)	450, 617, 736
Alw44I	GTGCAC	1 cut(s)	686
AoxI	GGCC	2 cut(s)	65, 124
ApaLI	GTGCAC	1 cut(s)	686
ApeKI	GCWGC	4 cut(s)	27, 442, 752, 755
ApoI	RAATTY	1 cut(s)	745
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	1 cut(s)	65
AsuHPI	GGTGA	2 cut(s)	131, 498
AsuNHI	GCTAGC	1 cut(s)	139
BaeGI	GKGCMC	1 cut(s)	690
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	690
BbvI	GCAGC	4 cut(s)	39, 429, 739, 742
BccI	CCATC	4 cut(s)	123, 183, 511, 613
BciT130I	CCWGG	1 cut(s)	312
BclI	TGATCA	1 cut(s)	694
BcoDI	GTCTC	3 cut(s)	450, 617, 736
BfaI	CTAG	4 cut(s)	140, 351, 435, 663
BfmI	CTRYAG	1 cut(s)	443
BfrI	CTTAAG	1 cut(s)	377
BisI	GCNGC	4 cut(s)	28, 443, 753, 756
BlsI	GCNGC	4 cut(s)	29, 444, 754, 757
Bme1390I	CCNGG	1 cut(s)	312
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	1 cut(s)	679
BmrFI	CCNGG	1 cut(s)	312
BmrI	ACTGGG	1 cut(s)	177
BmsI	GCATC	1 cut(s)	420
BmtI	GCTAGC	1 cut(s)	143
BmuI	ACTGGG	1 cut(s)	177
BpiI	GAAGAC	1 cut(s)	90
BpmI	CTGGAG	2 cut(s)	219, 364
BsaHI	GRCGYC	1 cut(s)	626
BsaI	GGTCTC	1 cut(s)	450
BsaJI	CCNNGG	2 cut(s)	68, 681
BsaXI	ACNNNNNCTCC	4 cut(s)	251, 281, 669, 699
Bsc4I	CCNNNNNNNGG	3 cut(s)	674, 724, 741
Bse1I	ACTGG	4 cut(s)	36, 172, 347, 797
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	2 cut(s)	68, 681
BseGI	GGATG	2 cut(s)	435, 838
BseLI	CCNNNNNNNGG	3 cut(s)	674, 724, 741
BseNI	ACTGG	4 cut(s)	36, 172, 347, 797
BseSI	GKGCMC	1 cut(s)	690
BseXI	GCAGC	4 cut(s)	39, 429, 739, 742
BsgI	GTGCAG	2 cut(s)	171, 377
BshFI	GGCC	2 cut(s)	67, 126
BsiHKAI	GWGCWC	1 cut(s)	690
BslI	CCNNNNNNNGG	3 cut(s)	674, 724, 741
BsmAI	GTCTC	3 cut(s)	450, 617, 736
BsmBI	CGTCTC	1 cut(s)	617
BsmI	GAATGC	2 cut(s)	487, 599
BsnI	GGCC	2 cut(s)	67, 126
Bso31I	GGTCTC	1 cut(s)	450
Bsp1286I	GDGCHC	1 cut(s)	690
Bsp143I	GATC	1 cut(s)	694
Bsp19I	CCATGG	2 cut(s)	68, 681
BspACI	CCGC	1 cut(s)	552
BspANI	GGCC	2 cut(s)	67, 126
BspHI	TCATGA	2 cut(s)	249, 526
BspLI	GGNNCC	1 cut(s)	679
BspMAI	CTGCAG	1 cut(s)	447
BspOI	GCTAGC	1 cut(s)	143
BspTI	CTTAAG	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	450
BsrBI	CCGCTC	1 cut(s)	552
BsrI	ACTGG	4 cut(s)	36, 172, 347, 797
BssECI	CCNNGG	2 cut(s)	68, 681
BssMI	GATC	1 cut(s)	694
BssNAI	GTATAC	1 cut(s)	706
BssNI	GRCGYC	1 cut(s)	626
BssT1I	CCWWGG	2 cut(s)	68, 681
Bst1107I	GTATAC	1 cut(s)	706
Bst2UI	CCWGG	1 cut(s)	312
Bst6I	CTCTTC	2 cut(s)	96, 167
BstACI	GRCGYC	1 cut(s)	626
BstAFI	CTTAAG	1 cut(s)	377
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	56
BstDSI	CCRYGG	2 cut(s)	68, 681
BstF5I	GGATG	2 cut(s)	435, 838
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	1 cut(s)	697
BstMAI	GTCTC	3 cut(s)	450, 617, 736
BstMBI	GATC	1 cut(s)	694
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 149, 439
BstNI	CCWGG	1 cut(s)	312
BstNSI	RCATGY	1 cut(s)	823
BstSCI	CCNGG	1 cut(s)	310
BstSFI	CTRYAG	1 cut(s)	443
BstSLI	GKGCMC	1 cut(s)	690
BstV1I	GCAGC	4 cut(s)	39, 429, 739, 742
BstV2I	GAAGAC	1 cut(s)	90
BstZ17I	GTATAC	1 cut(s)	706
BsuRI	GGCC	2 cut(s)	67, 126
BtgI	CCRYGG	2 cut(s)	68, 681
BtsCI	GGATG	2 cut(s)	435, 838
BtsIMutI	CAGTG	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	141
CciI	TCATGA	2 cut(s)	249, 526
CfoI	GCGC	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	65
CseI	GACGC	1 cut(s)	634
CviJI	RGCY	9 cut(s)	21, 67, 110, 126, 247, 473, 539, 680, 796
CviKI_1	RGCY	9 cut(s)	21, 67, 110, 126, 247, 473, 539, 680, 796
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	1 cut(s)	696
DpnII	GATC	1 cut(s)	694
DrdI	GACNNNNNNGTC	1 cut(s)	728
DseDI	GACNNNNNNGTC	1 cut(s)	728
Eam1104I	CTCTTC	2 cut(s)	96, 167
EarI	CTCTTC	2 cut(s)	96, 167
Eco130I	CCWWGG	2 cut(s)	68, 681
Eco31I	GGTCTC	1 cut(s)	450
Eco57I	CTGAAG	1 cut(s)	7
EcoRI	GAATTC	1 cut(s)	745
EcoRII	CCWGG	1 cut(s)	310
EcoT14I	CCWWGG	2 cut(s)	68, 681
EcoT22I	ATGCAT	1 cut(s)	599
ErhI	CCWWGG	2 cut(s)	68, 681
Esp3I	CGTCTC	1 cut(s)	617
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FbaI	TGATCA	1 cut(s)	694
FblI	GTMKAC	2 cut(s)	5, 705
Fnu4HI	GCNGC	4 cut(s)	28, 443, 753, 756
FokI	GGATG	2 cut(s)	442, 845
Fsp4HI	GCNGC	4 cut(s)	28, 443, 753, 756
FspBI	CTAG	4 cut(s)	140, 351, 435, 663
FspI	TGCGCA	1 cut(s)	300
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	4 cut(s)	28, 443, 753, 756
GsuI	CTGGAG	2 cut(s)	219, 364
HaeIII	GGCC	2 cut(s)	67, 126
HgaI	GACGC	1 cut(s)	634
HhaI	GCGC	1 cut(s)	301
Hin1I	GRCGYC	1 cut(s)	626
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	4 cut(s)	73, 97, 133, 253
HpaI	GTTAAC	1 cut(s)	544
HphI	GGTGA	2 cut(s)	131, 498
Hpy166II	GTNNAC	4 cut(s)	6, 544, 688, 706
Hpy188I	TCNGA	5 cut(s)	96, 204, 408, 610, 649
Hpy188III	TCNNGA	6 cut(s)	77, 236, 250, 257, 334, 527
Hpy8I	GTNNAC	4 cut(s)	6, 544, 688, 706
HpyAV	CCTTC	2 cut(s)	116, 272
HpyCH4V	TGCA	8 cut(s)	152, 180, 358, 445, 517, 597, 688, 844
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 149, 439
HpyF3I	CTNAG	1 cut(s)	56
Hsp92I	GRCGYC	1 cut(s)	626
HspAI	GCGC	1 cut(s)	299
Ksp22I	TGATCA	1 cut(s)	694
KspAI	GTTAAC	1 cut(s)	544
Kzo9I	GATC	1 cut(s)	694
LmnI	GCTCC	2 cut(s)	536, 677
Lsp1109I	GCAGC	4 cut(s)	39, 429, 739, 742
LweI	GCATC	1 cut(s)	420
MaeI	CTAG	4 cut(s)	140, 351, 435, 663
MaeIII	GTNAC	2 cut(s)	612, 764
MalI	GATC	1 cut(s)	696
MbiI	CCGCTC	1 cut(s)	552
MboI	GATC	1 cut(s)	694
MhlI	GDGCHC	1 cut(s)	690
MluCI	AATT	6 cut(s)	294, 467, 518, 641, 745, 836
MlyI	GAGTC	1 cut(s)	67
MmeI	TCCRAC	1 cut(s)	759
MnlI	CCTC	1 cut(s)	56
Mph1103I	ATGCAT	1 cut(s)	599
MseI	TTAA	4 cut(s)	194, 216, 378, 543
MspCI	CTTAAG	1 cut(s)	377
MspR9I	CCNGG	1 cut(s)	312
Mva1269I	GAATGC	2 cut(s)	487, 599
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	3 cut(s)	27, 149, 439
NcoI	CCATGG	2 cut(s)	68, 681
NdeII	GATC	1 cut(s)	694
NheI	GCTAGC	1 cut(s)	139
NlaIV	GGNNCC	1 cut(s)	679
NsbI	TGCGCA	1 cut(s)	300
NsiI	ATGCAT	1 cut(s)	599
NspI	RCATGY	1 cut(s)	823
PagI	TCATGA	2 cut(s)	249, 526
PctI	GAATGC	2 cut(s)	487, 599
PfeI	GAWTC	3 cut(s)	97, 133, 253
PflMI	CCANNNNNTGG	1 cut(s)	724
PkrI	GCNGC	4 cut(s)	29, 444, 754, 757
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	1 cut(s)	679
PspPI	GGNCC	1 cut(s)	65
PstI	CTGCAG	1 cut(s)	447
SaqAI	TTAA	4 cut(s)	194, 216, 378, 543
SatI	GCNGC	4 cut(s)	28, 443, 753, 756
Sau3AI	GATC	1 cut(s)	694
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	312
SduI	GDGCHC	1 cut(s)	690
SfaNI	GCATC	1 cut(s)	420
SfcI	CTRYAG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	6 cut(s)	294, 467, 518, 641, 745, 836
SsiI	CCGC	1 cut(s)	552
SspMI	CTAG	4 cut(s)	140, 351, 435, 663
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	2 cut(s)	68, 681
TaqI	TCGA	2 cut(s)	290, 576
TasI	AATT	6 cut(s)	294, 467, 518, 641, 745, 836
TfiI	GAWTC	3 cut(s)	97, 133, 253
Tru1I	TTAA	4 cut(s)	194, 216, 378, 543
Tru9I	TTAA	4 cut(s)	194, 216, 378, 543
TscAI	CASTG	1 cut(s)	43
TseI	GCWGC	4 cut(s)	27, 442, 752, 755
TspDTI	ATGAA	5 cut(s)	66, 342, 573, 801, 849
TspRI	CASTG	1 cut(s)	43
Van91I	CCANNNNNTGG	1 cut(s)	724
Vha464I	CTTAAG	1 cut(s)	377
VneI	GTGCAC	1 cut(s)	686
XapI	RAATTY	1 cut(s)	745
XceI	RCATGY	1 cut(s)	823
XmiI	GTMKAC	2 cut(s)	5, 705
XspI	CTAG	4 cut(s)	140, 351, 435, 663
Zsp2I	ATGCAT	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.