Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Forward (+)

5402624 .. 5405675

Gene Structure 3052 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG075800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTCGAGGCTGTGGTCTCTGATGACAGACGGAGATGGGGAGCAGCGACGATGTGAGGGAGAGAGATGCTTGCGTGTTGATACGTCTGTGATGGGGAGCAGCGACGATGCGGCGGTGACGGGGAGCAGCGAGGATGCGACGGTGAGGGAGCAGCGAGATAGGGTTTTCCTCTTGTCAGTGCCGAAGCCAAAGTTTGAAGCTTTCACTCACTCTGAGCGGCAGATCTCTCCGAGGCTCGACTCTCCTCCCTTCAGATTTGTCAACATGTTCACTTCAAGGAAGAAGATCCACAAGGATAAGGATGCTGAACCTACTGAGTTTGAGGAGTCTGTTGCACAGTCAATCTTTGATTTGGAGAACACAAACCAAGAGCTGAAAAGTGACTTGAAGGACTTGTACATTAACTCTGCAGCTCTCGTTGATGTTGCTGGAAATCGGAAGGCTGTTGTTATCCATGTTCCTTATAGACTGAGGAAGGCTTACCGCAAGATCCATGTTAGGCTTGTGAGGGAGCTTGAGAAGAAGTTCAGTGGAAAGGATGTGATTCTGATTGCCACACGTAGGATTGTGAGGCCTCCAAAGAAAGGCTCTGCTGCTCAACGTCCGCGCACTCGCACCCTGACTGCTGTTCATGAGGCAATATTGGAGGATGTTGTTTTGCCTGCTGAAATTGTTGGCAAGCGCACCAGATATCGCCTTGATGGTTCCAAGATCATGAAGGTTTTCCTTGACCCAAAAGAGCGAAACAACACCGAGTATAAGTTGGAGAGCTTTTCTGCAGTTTACCGTAAGCTTTCAGGAAAAGATGTTGTTTTTGAATACCCCATTACCGAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7e

Protein Analysis

279

Amino Acids

31.97

Weight (kDa)

9.51

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7e	PF01251	95 - 274	4.1e-78	Ribosomal protein S7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	217
AccII	CGCG	1 cut(s)	607
AciI	CCGC	5 cut(s)	110, 113, 217, 484, 605
AclWI	GGATC	2 cut(s)	280, 484
AcuI	CTGAAG	1 cut(s)	235
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	2 cut(s)	561, 584
AflIII	ACRYGT	2 cut(s)	264, 557
AgsI	TTSAA	4 cut(s)	197, 276, 388, 818
AluBI	AGCT	6 cut(s)	200, 373, 413, 514, 771, 793
AluI	AGCT	6 cut(s)	200, 373, 413, 514, 771, 793
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	2 cut(s)	280, 484
AoxI	GGCC	2 cut(s)	572, 834
ApeKI	GCWGC	6 cut(s)	43, 99, 126, 151, 410, 593
Asp700I	GAANNNNTTC	2 cut(s)	524, 722
AspLEI	GCGC	2 cut(s)	609, 684
AsuHPI	GGTGA	2 cut(s)	127, 154
BaeI	ACNNNNGTAYC	2 cut(s)	72, 105
BarI	GAAGNNNNNNTAC	2 cut(s)	380, 412
BbvI	GCAGC	6 cut(s)	55, 111, 138, 163, 422, 580
BccI	CCATC	3 cut(s)	29, 85, 695
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	1 cut(s)	838
BfmI	CTRYAG	2 cut(s)	408, 777
BglII	AGATCT	1 cut(s)	222
BisI	GCNGC	8 cut(s)	44, 100, 111, 127, 152, 218, 411, 594
BlsI	GCNGC	8 cut(s)	45, 101, 112, 128, 153, 219, 412, 595
BmiI	GGNNCC	1 cut(s)	706
BmsI	GCATC	4 cut(s)	56, 97, 124, 292
BpuEI	CTTGAG	1 cut(s)	536
BsaAI	YACGTR	1 cut(s)	560
BsaI	GGTCTC	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	230, 831
Bsc4I	CCNNNNNNNGG	2 cut(s)	561, 584
BseDI	CCNNGG	2 cut(s)	230, 831
BseGI	GGATG	4 cut(s)	139, 307, 544, 655
BseLI	CCNNNNNNNGG	2 cut(s)	561, 584
BseMII	CTCAG	3 cut(s)	204, 306, 461
BseRI	GAGGAG	2 cut(s)	234, 338
BseXI	GCAGC	6 cut(s)	55, 111, 138, 163, 422, 580
Bsh1236I	CGCG	1 cut(s)	607
BshFI	GGCC	2 cut(s)	574, 836
BslI	CCNNNNNNNGG	2 cut(s)	561, 584
BsmAI	GTCTC	1 cut(s)	21
BsnI	GGCC	2 cut(s)	574, 836
Bso31I	GGTCTC	1 cut(s)	21
Bsp1407I	TGTACA	1 cut(s)	396
Bsp143I	GATC	4 cut(s)	222, 285, 489, 711
BspACI	CCGC	5 cut(s)	110, 113, 217, 484, 605
BspANI	GGCC	2 cut(s)	574, 836
BspCNI	CTCAG	3 cut(s)	205, 307, 462
BspFNI	CGCG	1 cut(s)	607
BspHI	TCATGA	2 cut(s)	631, 714
BspLI	GGNNCC	1 cut(s)	706
BspMAI	CTGCAG	2 cut(s)	412, 781
BspPI	GGATC	2 cut(s)	280, 484
BspTNI	GGTCTC	1 cut(s)	21
BsrBI	CCGCTC	1 cut(s)	217
BsrGI	TGTACA	1 cut(s)	396
BssECI	CCNNGG	2 cut(s)	230, 831
BssMI	GATC	4 cut(s)	222, 285, 489, 711
Bst4CI	ACNGT	3 cut(s)	142, 339, 788
BstAUI	TGTACA	1 cut(s)	396
BstBAI	YACGTR	1 cut(s)	560
BstC8I	GCNNGC	3 cut(s)	71, 663, 680
BstDEI	CTNAG	3 cut(s)	213, 315, 470
BstF5I	GGATG	4 cut(s)	139, 307, 544, 655
BstFNI	CGCG	1 cut(s)	607
BstHHI	GCGC	2 cut(s)	609, 684
BstKTI	GATC	4 cut(s)	225, 288, 492, 714
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	4 cut(s)	222, 285, 489, 711
BstNSI	RCATGY	1 cut(s)	268
BstSFI	CTRYAG	2 cut(s)	408, 777
BstUI	CGCG	1 cut(s)	607
BstV1I	GCAGC	6 cut(s)	55, 111, 138, 163, 422, 580
BstX2I	RGATCY	3 cut(s)	222, 285, 489
BstYI	RGATCY	3 cut(s)	222, 285, 489
BsuRI	GGCC	2 cut(s)	574, 836
BtsCI	GGATG	4 cut(s)	139, 307, 544, 655
BtsIMutI	CAGTG	2 cut(s)	183, 535
Cac8I	GCNNGC	3 cut(s)	71, 663, 680
CciI	TCATGA	2 cut(s)	631, 714
CfoI	GCGC	2 cut(s)	609, 684
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	5 cut(s)	265, 455, 494, 632, 715
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	3 cut(s)	213, 315, 470
DpnI	GATC	4 cut(s)	224, 287, 491, 713
DpnII	GATC	4 cut(s)	222, 285, 489, 711
Eco147I	AGGCCT	2 cut(s)	574, 836
Eco31I	GGTCTC	1 cut(s)	21
Eco32I	GATATC	1 cut(s)	692
Eco57I	CTGAAG	1 cut(s)	235
EcoRV	GATATC	1 cut(s)	692
FaeI	CATG	5 cut(s)	268, 458, 497, 635, 718
FaiI	YATR	7 cut(s)	266, 456, 465, 495, 633, 716, 759
FatI	CATG	5 cut(s)	264, 454, 493, 631, 714
Fnu4HI	GCNGC	8 cut(s)	44, 100, 111, 127, 152, 218, 411, 594
FokI	GGATG	4 cut(s)	146, 314, 551, 662
Fsp4HI	GCNGC	8 cut(s)	44, 100, 111, 127, 152, 218, 411, 594
FspBI	CTAG	1 cut(s)	838
GlaI	GCGC	2 cut(s)	608, 683
GluI	GCNGC	8 cut(s)	44, 100, 111, 127, 152, 218, 411, 594
HaeIII	GGCC	2 cut(s)	574, 836
HhaI	GCGC	2 cut(s)	609, 684
Hin1II	CATG	5 cut(s)	268, 458, 497, 635, 718
Hin6I	GCGC	2 cut(s)	607, 682
HinP1I	GCGC	2 cut(s)	607, 682
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HindIII	AAGCTT	2 cut(s)	198, 791
HinfI	GANTC	3 cut(s)	239, 326, 544
HphI	GGTGA	2 cut(s)	127, 154
Hpy166II	GTNNAC	3 cut(s)	262, 270, 784
Hpy188I	TCNGA	6 cut(s)	21, 214, 231, 254, 438, 549
Hpy188III	TCNNGA	3 cut(s)	632, 715, 798
Hpy8I	GTNNAC	3 cut(s)	262, 270, 784
Hpy99I	CGWCG	3 cut(s)	51, 107, 142
HpyAV	CCTTC	5 cut(s)	259, 382, 433, 469, 712
HpyCH4III	ACNGT	3 cut(s)	142, 339, 788
HpyCH4IV	ACGT	3 cut(s)	83, 559, 601
HpyCH4V	TGCA	3 cut(s)	335, 410, 779
HpyF3I	CTNAG	3 cut(s)	213, 315, 470
HpySE526I	ACGT	3 cut(s)	83, 559, 601
Hsp92II	CATG	5 cut(s)	268, 458, 497, 635, 718
HspAI	GCGC	2 cut(s)	607, 682
Kzo9I	GATC	4 cut(s)	222, 285, 489, 711
LmnI	GCTCC	5 cut(s)	40, 96, 123, 148, 511
LpnPI	CCDG	5 cut(s)	414, 632, 675, 700, 783
Lsp1109I	GCAGC	6 cut(s)	55, 111, 138, 163, 422, 580
LweI	GCATC	4 cut(s)	56, 97, 124, 292
MaeI	CTAG	1 cut(s)	838
MaeII	ACGT	3 cut(s)	83, 559, 601
MaeIII	GTNAC	2 cut(s)	115, 380
MalI	GATC	4 cut(s)	224, 287, 491, 713
MbiI	CCGCTC	1 cut(s)	217
MboI	GATC	4 cut(s)	222, 285, 489, 711
MboII	GAAGA	3 cut(s)	292, 295, 532
MflI	RGATCY	3 cut(s)	222, 285, 489
MluCI	AATT	1 cut(s)	669
MlyI	GAGTC	2 cut(s)	233, 335
MmeI	TCCRAC	1 cut(s)	744
MroXI	GAANNNNTTC	2 cut(s)	524, 722
MseI	TTAA	1 cut(s)	402
MvnI	CGCG	1 cut(s)	607
NdeII	GATC	4 cut(s)	222, 285, 489, 711
NlaIII	CATG	5 cut(s)	268, 458, 497, 635, 718
NlaIV	GGNNCC	1 cut(s)	706
NmuCI	GTSAC	2 cut(s)	115, 380
NspI	RCATGY	1 cut(s)	268
PagI	TCATGA	2 cut(s)	631, 714
PceI	AGGCCT	2 cut(s)	574, 836
PciI	ACATGT	1 cut(s)	264
PdmI	GAANNNNTTC	2 cut(s)	524, 722
PfeI	GAWTC	1 cut(s)	544
PkrI	GCNGC	8 cut(s)	45, 101, 112, 128, 153, 219, 412, 595
PleI	GAGTC	2 cut(s)	233, 334
PpsI	GAGTC	2 cut(s)	233, 334
Ppu21I	YACGTR	1 cut(s)	560
PscI	ACATGT	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	706
PstI	CTGCAG	2 cut(s)	412, 781
PsuI	RGATCY	3 cut(s)	222, 285, 489
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	8 cut(s)	44, 100, 111, 127, 152, 218, 411, 594
Sau3AI	GATC	4 cut(s)	222, 285, 489, 711
SchI	GAGTC	2 cut(s)	233, 335
SfaNI	GCATC	4 cut(s)	56, 97, 124, 292
SfcI	CTRYAG	2 cut(s)	408, 777
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	1 cut(s)	669
SseBI	AGGCCT	2 cut(s)	574, 836
SsiI	CCGC	5 cut(s)	110, 113, 217, 484, 605
SspI	AATATT	1 cut(s)	642
SspMI	CTAG	1 cut(s)	838
StuI	AGGCCT	2 cut(s)	574, 836
TaaI	ACNGT	3 cut(s)	142, 339, 788
TaiI	ACGT	3 cut(s)	86, 562, 604
TaqI	TCGA	2 cut(s)	5, 237
TasI	AATT	1 cut(s)	669
TatI	WGTACW	1 cut(s)	396
TauI	GCSGC	2 cut(s)	113, 220
TfiI	GAWTC	1 cut(s)	544
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	2 cut(s)	183, 535
TseFI	GTSAC	2 cut(s)	115, 380
TseI	GCWGC	6 cut(s)	43, 99, 126, 151, 410, 593
Tsp45I	GTSAC	2 cut(s)	115, 380
TspDTI	ATGAA	2 cut(s)	620, 731
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	2 cut(s)	183, 535
XceI	RCATGY	1 cut(s)	268
XmnI	GAANNNNTTC	2 cut(s)	524, 722
XspI	CTAG	1 cut(s)	838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.