Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Forward (+)

12202521 .. 12204948

Gene Structure 2428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g09890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTTTACTTCAAGCAAGAAGATTTCGAAGGATAAGGGTGCAGAGCCGACTGAGTTTGAAGAGTCGGTTGCGCAGGCGATTTTTGATTTGGAAAACACTAACCAGGAGCTGAAAAGTGAGCTGAAGGATCTCTATATTAATTCAGCAGTTCAAGTTGATGTTGCTGGAAACAGGAAGGCTGTTGTTGTCCATGTACCCTATAGACTGAGGAAGGCTTATCGCAAGATCCATGTTCGTCTCGTGAGGGAGCTTGAGAAGAAGTTCAGTGGAAAGGATGTGATCCTGATTGCCACACGAAGGATAGTAAGGCCTCCAAAGAAAGGTTCTGCTGCTCAACGGCCCCGCACTCGCACACTTACTGCTGTCCATGAGGCTATGTTGGAGGATGTTGTTGCTCCTGCTGAGATTGTTGGAAAGCGCACCAGATACCGCCTTGATGGATCAAAGATAATGAAGGTGTTTTTGGATCCTAAGGAGCGAAACAACACAGAATACAAGCTGGAGAGCTTCTCTGCAGTTTATCGGAAGCTCTCAGGCAAAGATGTGGTGTTTGAGTATCCAGTTACTGAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7e

Protein Analysis

192

Amino Acids

21.82

Weight (kDa)

9.8

Isoelectric Point (pI)

22.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7e	PF01251	7 - 186	2.1e-79	Ribosomal protein S7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	72
AciI	CCGC	2 cut(s)	343, 430
AclWI	GGATC	6 cut(s)	135, 220, 274, 448, 461, 474
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	297, 320
AgsI	TTSAA	3 cut(s)	12, 59, 152
AjnI	CCWGG	1 cut(s)	102
AjuI	GAANNNNNNNTTGG	4 cut(s)	307, 339, 446, 478
AluBI	AGCT	6 cut(s)	109, 121, 250, 499, 507, 529
AluI	AGCT	6 cut(s)	109, 121, 250, 499, 507, 529
Alw26I	GTCTC	1 cut(s)	242
AlwI	GGATC	6 cut(s)	135, 220, 274, 448, 461, 474
AlwNI	CAGNNNCTG	2 cut(s)	109, 566
AoxI	GGCC	2 cut(s)	308, 338
ApeKI	GCWGC	1 cut(s)	329
AseI	ATTAAT	1 cut(s)	138
Asp700I	GAANNNNTTC	1 cut(s)	260
AspLEI	GCGC	2 cut(s)	73, 420
AspS9I	GGNCC	1 cut(s)	339
AsuII	TTCGAA	1 cut(s)	26
AxyI	CCTNAGG	1 cut(s)	471
BamHI	GGATCC	1 cut(s)	466
BauI	CACGAG	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	1 cut(s)	431
BceAI	ACGGC	1 cut(s)	353
BciT130I	CCWGG	1 cut(s)	104
BciVI	GTATCC	1 cut(s)	567
BcoDI	GTCTC	1 cut(s)	242
BfmI	CTRYAG	2 cut(s)	199, 513
BfuI	GTATCC	1 cut(s)	567
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	339
BmiI	GGNNCC	2 cut(s)	341, 468
BmrFI	CCNGG	1 cut(s)	104
BplI	GAGNNNNNCTC	2 cut(s)	494, 526
BpmI	CTGGAG	1 cut(s)	521
Bpu14I	TTCGAA	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	2 cut(s)	297, 320
Bse1I	ACTGG	1 cut(s)	560
Bse21I	CCTNAGG	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	104
BseGI	GGATG	2 cut(s)	280, 391
BseLI	CCNNNNNNNGG	2 cut(s)	297, 320
BseMII	CTCAG	5 cut(s)	42, 197, 393, 546, 558
BseNI	ACTGG	1 cut(s)	560
BseXI	GCAGC	1 cut(s)	316
BsgI	GTGCAG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	310, 340
BslI	CCNNNNNNNGG	2 cut(s)	297, 320
BsmAI	GTCTC	1 cut(s)	242
BsmBI	CGTCTC	1 cut(s)	242
BsnI	GGCC	2 cut(s)	310, 340
Bsp119I	TTCGAA	1 cut(s)	26
Bsp143I	GATC	5 cut(s)	127, 225, 279, 440, 466
BspACI	CCGC	2 cut(s)	343, 430
BspANI	GGCC	2 cut(s)	310, 340
BspCNI	CTCAG	5 cut(s)	43, 198, 394, 545, 559
BspLI	GGNNCC	2 cut(s)	341, 468
BspMAI	CTGCAG	1 cut(s)	517
BspPI	GGATC	6 cut(s)	135, 220, 274, 448, 461, 474
BspT104I	TTCGAA	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	560
BssMI	GATC	5 cut(s)	127, 225, 279, 440, 466
BssSI	CACGAG	1 cut(s)	239
Bst2BI	CACGAG	1 cut(s)	239
Bst2UI	CCWGG	1 cut(s)	104
Bst6I	CTCTTC	1 cut(s)	54
BstBI	TTCGAA	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	7 cut(s)	51, 206, 402, 471, 532, 567, 573
BstF5I	GGATG	2 cut(s)	280, 391
BstHHI	GCGC	2 cut(s)	73, 420
BstKTI	GATC	5 cut(s)	130, 228, 282, 443, 469
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	5 cut(s)	127, 225, 279, 440, 466
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	2 cut(s)	199, 513
BstV1I	GCAGC	1 cut(s)	316
BstX2I	RGATCY	3 cut(s)	127, 225, 466
BstYI	RGATCY	3 cut(s)	127, 225, 466
Bsu36I	CCTNAGG	1 cut(s)	471
BsuI	GTATCC	1 cut(s)	567
BsuRI	GGCC	2 cut(s)	310, 340
BtsCI	GGATG	2 cut(s)	280, 391
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	75
CaiI	CAGNNNCTG	2 cut(s)	109, 566
CfoI	GCGC	2 cut(s)	73, 420
Cfr13I	GGNCC	1 cut(s)	339
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	3 cut(s)	191, 230, 368
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	7 cut(s)	51, 206, 402, 471, 532, 567, 573
DpnI	GATC	5 cut(s)	129, 227, 281, 442, 468
DpnII	GATC	5 cut(s)	127, 225, 279, 440, 466
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco147I	AGGCCT	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	143
Eco81I	CCTNAGG	1 cut(s)	471
EcoRII	CCWGG	1 cut(s)	102
Esp3I	CGTCTC	1 cut(s)	242
FaeI	CATG	3 cut(s)	194, 233, 371
FaiI	YATR	6 cut(s)	135, 192, 201, 231, 369, 377
FatI	CATG	3 cut(s)	190, 229, 367
FauI	CCCGC	1 cut(s)	350
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	2 cut(s)	287, 398
Fsp4HI	GCNGC	1 cut(s)	330
FspI	TGCGCA	1 cut(s)	72
GlaI	GCGC	2 cut(s)	72, 419
GluI	GCNGC	1 cut(s)	330
GsuI	CTGGAG	1 cut(s)	521
HaeIII	GGCC	2 cut(s)	310, 340
HhaI	GCGC	2 cut(s)	73, 420
Hin1II	CATG	3 cut(s)	194, 233, 371
Hin6I	GCGC	2 cut(s)	71, 418
HinP1I	GCGC	2 cut(s)	71, 418
HinfI	GANTC	1 cut(s)	62
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	525
Hpy188III	TCNNGA	2 cut(s)	241, 283
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	6 cut(s)	22, 118, 169, 205, 291, 448
HpyCH4V	TGCA	2 cut(s)	41, 515
HpyF3I	CTNAG	7 cut(s)	51, 206, 402, 471, 532, 567, 573
Hsp92II	CATG	3 cut(s)	194, 233, 371
HspAI	GCGC	2 cut(s)	71, 418
Kzo9I	GATC	5 cut(s)	127, 225, 279, 440, 466
LmnI	GCTCC	4 cut(s)	106, 247, 400, 475
Lsp1109I	GCAGC	1 cut(s)	316
MaeIII	GTNAC	1 cut(s)	562
MalI	GATC	5 cut(s)	129, 227, 281, 442, 468
MboI	GATC	5 cut(s)	127, 225, 279, 440, 466
MboII	GAAGA	3 cut(s)	31, 71, 268
MflI	RGATCY	3 cut(s)	127, 225, 466
MluCI	AATT	1 cut(s)	139
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	2 cut(s)	360, 391
MnlI	CCTC	6 cut(s)	201, 237, 321, 364, 376, 562
MroXI	GAANNNNTTC	1 cut(s)	260
MseI	TTAA	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
NdeII	GATC	5 cut(s)	127, 225, 279, 440, 466
NlaIII	CATG	3 cut(s)	194, 233, 371
NlaIV	GGNNCC	2 cut(s)	341, 468
NsbI	TGCGCA	1 cut(s)	72
NspV	TTCGAA	1 cut(s)	26
PceI	AGGCCT	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PshBI	ATTAAT	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	341, 468
PspPI	GGNCC	1 cut(s)	339
PstI	CTGCAG	1 cut(s)	517
PstNI	CAGNNNCTG	2 cut(s)	109, 566
PsuI	RGATCY	3 cut(s)	127, 225, 466
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	5 cut(s)	127, 225, 279, 440, 466
Sau96I	GGNCC	1 cut(s)	339
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	8 cut(s)	111, 123, 252, 325, 459, 501, 509, 531
SfcI	CTRYAG	2 cut(s)	199, 513
SfuI	TTCGAA	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	1 cut(s)	139
SseBI	AGGCCT	1 cut(s)	310
SsiI	CCGC	2 cut(s)	343, 430
StuI	AGGCCT	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	102
TaqI	TCGA	1 cut(s)	26
TasI	AATT	1 cut(s)	139
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	271
TseI	GCWGC	1 cut(s)	329
TspDTI	ATGAA	1 cut(s)	467
TspRI	CASTG	1 cut(s)	271
VspI	ATTAAT	1 cut(s)	138
XmnI	GAANNNNTTC	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.