Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Reverse (-)

1198616 .. 1201084

Gene Structure 2469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G016800.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTATACATCAAGGAAGAAGATTCACAAGGACAAGAACGCTGAACCCACTGAATTTGAAGAGTCAGTTGGACAGGCAATCTTTGATTTGGAAACAAACTCGGACCTAAAAAGTGAACTGAAGGATCTATATATAAATTCGGCTGTTCAAGTTGATGTGGCTGGGAACCGGAAGGCTGTTGTTATCCACATACCATATAGACTTAGGAAGGCTTATCGCAAGATCCATGTTCGGCTTGTGAGGGAGCTAGAGAAGAAATTCAGTGGAAAGGATGTAGTTCTGATCGCCACACGGAGGATAGTGAGGCCTCCAAAGAAAGGGTCTGCTGTCCAACGGCCCCGCACTCGTACTCTAACTGCTGTGCATGAGGCAATGTTGGAGGATGTTGTTTTGCCTGCTGAGATTGTTGGTAAACGAACTAGATATCGACTTGATGGGTCCAAGATAATGAAGGCTAAGAACCTTATACCAAAGAGAAGATTTTGTTACGAAGATGTCCAAAGACTGCCAATGGAATGGATGAATTGCGAACGTAGTACATTTAGGTTTTCTTGGATCCCAAGGAACGAAACAACACGGAGTACAAGCTGGAGAGCTTTTCTGCAGTTTACAGGAAGCTTTCAGGAAAAGATGTTGTATTTGAGTACCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7e

Protein Analysis

218

Amino Acids

25.49

Weight (kDa)

10.15

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	340
AclWI	GGATC	4 cut(s)	132, 217, 550, 563
AcsI	RAATTY	3 cut(s)	53, 136, 257
AcuI	CTGAAG	1 cut(s)	140
AfaI	GTAC	4 cut(s)	349, 538, 583, 646
AfiI	CCNNNNNNNGG	2 cut(s)	294, 317
AgsI	TTSAA	2 cut(s)	59, 149
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
AluBI	AGCT	4 cut(s)	247, 588, 596, 618
AluI	AGCT	4 cut(s)	247, 588, 596, 618
AlwI	GGATC	4 cut(s)	132, 217, 550, 563
AoxI	GGCC	2 cut(s)	305, 335
ApoI	RAATTY	3 cut(s)	53, 136, 257
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
Asp700I	GAANNNNTTC	1 cut(s)	257
AspS9I	GGNCC	3 cut(s)	103, 336, 438
AvaII	GGWCC	2 cut(s)	103, 438
BamHI	GGATCC	1 cut(s)	555
BccI	CCATC	1 cut(s)	428
BceAI	ACGGC	1 cut(s)	350
BfaI	CTAG	2 cut(s)	248, 420
BfmI	CTRYAG	1 cut(s)	602
Bme18I	GGWCC	2 cut(s)	103, 438
BmgT120I	GGNCC	3 cut(s)	103, 336, 438
BmiI	GGNNCC	4 cut(s)	167, 338, 439, 557
BpmI	CTGGAG	1 cut(s)	610
BsaJI	CCNNGG	1 cut(s)	560
BsaWI	WCCGGW	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 317
Bse3DI	GCAATG	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	560
BseGI	GGATG	3 cut(s)	277, 388, 525
BseLI	CCNNNNNNNGG	2 cut(s)	294, 317
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	1 cut(s)	390
BseYI	CCCAGC	1 cut(s)	161
BshFI	GGCC	2 cut(s)	307, 337
BsiSI	CCGG	1 cut(s)	169
BslI	CCNNNNNNNGG	2 cut(s)	294, 317
BsnI	GGCC	2 cut(s)	307, 337
Bsp143I	GATC	4 cut(s)	124, 222, 282, 555
BspACI	CCGC	1 cut(s)	340
BspANI	GGCC	2 cut(s)	307, 337
BspCNI	CTCAG	1 cut(s)	391
BspLI	GGNNCC	4 cut(s)	167, 338, 439, 557
BspMAI	CTGCAG	1 cut(s)	606
BspPI	GGATC	4 cut(s)	132, 217, 550, 563
BsrDI	GCAATG	1 cut(s)	378
BssECI	CCNNGG	1 cut(s)	560
BssMI	GATC	4 cut(s)	124, 222, 282, 555
BssNAI	GTATAC	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	560
Bst1107I	GTATAC	1 cut(s)	6
Bst6I	CTCTTC	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	3 cut(s)	203, 399, 456
BstF5I	GGATG	3 cut(s)	277, 388, 525
BstKTI	GATC	4 cut(s)	127, 225, 285, 558
BstMBI	GATC	4 cut(s)	124, 222, 282, 555
BstSFI	CTRYAG	1 cut(s)	602
BstX2I	RGATCY	3 cut(s)	124, 222, 555
BstXI	CCANNNNNNTGG	1 cut(s)	516
BstYI	RGATCY	3 cut(s)	124, 222, 555
BstZ17I	GTATAC	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	307, 337
BtsCI	GGATG	3 cut(s)	277, 388, 525
BtsIMutI	CAGTG	2 cut(s)	48, 268
Cac8I	GCNNGC	1 cut(s)	396
Cfr13I	GGNCC	3 cut(s)	103, 336, 438
Csp6I	GTAC	4 cut(s)	348, 537, 582, 645
CspCI	CAANNNNNGTGG	2 cut(s)	37, 72
CviAII	CATG	2 cut(s)	227, 365
CviQI	GTAC	4 cut(s)	348, 537, 582, 645
DdeI	CTNAG	3 cut(s)	203, 399, 456
DpnI	GATC	4 cut(s)	126, 224, 284, 557
DpnII	GATC	4 cut(s)	124, 222, 282, 555
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	560
Eco147I	AGGCCT	1 cut(s)	307
Eco32I	GATATC	1 cut(s)	425
Eco47I	GGWCC	2 cut(s)	103, 438
Eco57I	CTGAAG	1 cut(s)	140
EcoRV	GATATC	1 cut(s)	425
EcoT14I	CCWWGG	1 cut(s)	560
ErhI	CCWWGG	1 cut(s)	560
FaeI	CATG	2 cut(s)	230, 368
FatI	CATG	2 cut(s)	226, 364
FauI	CCCGC	1 cut(s)	347
FblI	GTMKAC	1 cut(s)	5
FokI	GGATG	3 cut(s)	284, 395, 532
FspBI	CTAG	2 cut(s)	248, 420
GsaI	CCCAGC	1 cut(s)	165
GsuI	CTGGAG	1 cut(s)	610
HaeIII	GGCC	2 cut(s)	307, 337
HapII	CCGG	1 cut(s)	169
Hin1II	CATG	2 cut(s)	230, 368
HindIII	AAGCTT	1 cut(s)	616
HinfI	GANTC	2 cut(s)	22, 62
HpaII	CCGG	1 cut(s)	169
Hpy166II	GTNNAC	4 cut(s)	6, 116, 413, 609
Hpy188I	TCNGA	2 cut(s)	103, 282
Hpy188III	TCNNGA	1 cut(s)	623
Hpy8I	GTNNAC	4 cut(s)	6, 116, 413, 609
HpyAV	CCTTC	4 cut(s)	115, 166, 202, 445
HpyCH4IV	ACGT	1 cut(s)	532
HpyCH4V	TGCA	2 cut(s)	364, 604
HpyF3I	CTNAG	3 cut(s)	203, 399, 456
HpySE526I	ACGT	1 cut(s)	532
Hsp92II	CATG	2 cut(s)	230, 368
Kzo9I	GATC	4 cut(s)	124, 222, 282, 555
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	7 cut(s)	59, 147, 182, 408, 574, 597, 608
MaeI	CTAG	2 cut(s)	248, 420
MaeII	ACGT	1 cut(s)	532
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	4 cut(s)	126, 224, 284, 557
MboI	GATC	4 cut(s)	124, 222, 282, 555
MboII	GAAGA	6 cut(s)	28, 31, 71, 265, 489, 503
MflI	RGATCY	3 cut(s)	124, 222, 555
MluCI	AATT	4 cut(s)	53, 136, 257, 523
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	3 cut(s)	49, 355, 357
MnlI	CCTC	6 cut(s)	234, 288, 297, 318, 361, 373
MroXI	GAANNNNTTC	1 cut(s)	257
MspI	CCGG	1 cut(s)	169
NdeII	GATC	4 cut(s)	124, 222, 282, 555
NlaIII	CATG	2 cut(s)	230, 368
NlaIV	GGNNCC	4 cut(s)	167, 338, 439, 557
PceI	AGGCCT	1 cut(s)	307
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PspFI	CCCAGC	1 cut(s)	161
PspN4I	GGNNCC	4 cut(s)	167, 338, 439, 557
PspPI	GGNCC	3 cut(s)	103, 336, 438
PstI	CTGCAG	1 cut(s)	606
PsuI	RGATCY	3 cut(s)	124, 222, 555
RsaI	GTAC	4 cut(s)	349, 538, 583, 646
RsaNI	GTAC	4 cut(s)	348, 537, 582, 645
Sau3AI	GATC	4 cut(s)	124, 222, 282, 555
Sau96I	GGNCC	3 cut(s)	103, 336, 438
SchI	GAGTC	1 cut(s)	71
SetI	ASST	8 cut(s)	108, 249, 465, 535, 548, 590, 598, 620
SfcI	CTRYAG	1 cut(s)	602
SinI	GGWCC	2 cut(s)	103, 438
Sse9I	AATT	4 cut(s)	53, 136, 257, 523
SseBI	AGGCCT	1 cut(s)	307
SsiI	CCGC	1 cut(s)	340
SspMI	CTAG	2 cut(s)	248, 420
StuI	AGGCCT	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	560
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	1 cut(s)	427
TasI	AATT	4 cut(s)	53, 136, 257, 523
TatI	WGTACW	2 cut(s)	536, 581
TfiI	GAWTC	1 cut(s)	22
TscAI	CASTG	2 cut(s)	55, 268
TspDTI	ATGAA	2 cut(s)	464, 536
TspGWI	ACGGA	2 cut(s)	307, 592
TspRI	CASTG	2 cut(s)	55, 268
VpaK11BI	GGWCC	2 cut(s)	103, 438
XapI	RAATTY	3 cut(s)	53, 136, 257
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	2 cut(s)	248, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.