Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Reverse (-)

6748728 .. 6750871

Gene Structure 2144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g11920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGACATACCCACGTCAATCCCCTACAGTCATGCAATTGATGGTGGAGCTAGTCTTGAGCAAGTGTGTGCCGAAGCCAAAGGTCGAAGCTTTCACTCACTCTGAGCGGCAGATCTCTCTTTCAGGCTTTTTCAACATGTTCACTGCAAGGAAGAAGATCCACAAGGATAAGGATGCTGAACCTTCTGAGTTTGAGGAGTCTGTTGCACAGGCGTTCTTTGATCTGGAGAATACCAACCAAGAGCTGAAAAGTGACTTGAAGGACTTGTACATCAACTCTGCAGCTCTTGTTGATGTTGCTGGAAATCGGAAGGCTGTTGTTATCCATGTTCCTTTTAGATTGAGGAAGGCTTACCGCAAGATCCATGTTAGGCTTGTCAGGGAGCTTGAGAAGAAGTTCAGTGGAAAGGATGTTATTCTGATTGCCACCCGTAGGATTGTGAGGCCTCCCAAAAAAGGCTCTGCTGCTCAACGTCCACGCACTCGCACCCTGACTGCTGTTCATGAGGCAGTATTGGAGGATGTTGTTTTGCCTGCTGAAATTGTTGGCAAGCGCATCAGATATCGCCTTGATGGTTCCAAGATCATGAAGGTTTTCCTCGACCCGAAAGAGCGCAACAACACTGAGTATAAGCTGGAGAGCTTTTCTGCAGTTTACCGAAAGCTTTCAGGAAAAGATGTTGTTTTTGAATATCCCATCACTGAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7e

Protein Analysis

237

Amino Acids

27.12

Weight (kDa)

9.8

Isoelectric Point (pI)

29.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7e	PF01251	52 - 231	3.5e-78	Ribosomal protein S7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	106
AciI	CCGC	2 cut(s)	106, 355
AclWI	GGATC	2 cut(s)	151, 355
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	2 cut(s)	432, 455
AflIII	ACRYGT	1 cut(s)	135
AgsI	TTSAA	3 cut(s)	133, 259, 689
AjiI	CACGTC	1 cut(s)	14
AluBI	AGCT	8 cut(s)	49, 89, 244, 284, 385, 634, 642, 664
AluI	AGCT	8 cut(s)	49, 89, 244, 284, 385, 634, 642, 664
AlwI	GGATC	2 cut(s)	151, 355
AoxI	GGCC	2 cut(s)	443, 705
ApeKI	GCWGC	2 cut(s)	281, 464
Asp700I	GAANNNNTTC	3 cut(s)	395, 593, 664
AspLEI	GCGC	2 cut(s)	555, 615
BarI	GAAGNNNNNNTAC	2 cut(s)	251, 283
BbvI	GCAGC	2 cut(s)	293, 451
BccI	CCATC	3 cut(s)	34, 566, 704
BfaI	CTAG	2 cut(s)	50, 709
BfmI	CTRYAG	3 cut(s)	24, 279, 648
BglII	AGATCT	1 cut(s)	111
BisI	GCNGC	3 cut(s)	107, 282, 465
BlsI	GCNGC	3 cut(s)	108, 283, 466
BmgBI	CACGTC	1 cut(s)	14
BmiI	GGNNCC	1 cut(s)	577
BmsI	GCATC	2 cut(s)	163, 564
BpmI	CTGGAG	2 cut(s)	245, 656
BpuEI	CTTGAG	2 cut(s)	76, 407
Bsc4I	CCNNNNNNNGG	2 cut(s)	432, 455
BseGI	GGATG	3 cut(s)	178, 415, 526
BseLI	CCNNNNNNNGG	2 cut(s)	432, 455
BseMII	CTCAG	4 cut(s)	93, 177, 615, 693
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	293, 451
BshFI	GGCC	2 cut(s)	445, 707
BslI	CCNNNNNNNGG	2 cut(s)	432, 455
BsnI	GGCC	2 cut(s)	445, 707
Bsp1407I	TGTACA	1 cut(s)	267
Bsp143I	GATC	5 cut(s)	111, 156, 220, 360, 582
BspACI	CCGC	2 cut(s)	106, 355
BspANI	GGCC	2 cut(s)	445, 707
BspCNI	CTCAG	4 cut(s)	94, 178, 616, 694
BspHI	TCATGA	2 cut(s)	502, 585
BspLI	GGNNCC	1 cut(s)	577
BspMAI	CTGCAG	2 cut(s)	283, 652
BspPI	GGATC	2 cut(s)	151, 355
BsrBI	CCGCTC	1 cut(s)	106
BsrGI	TGTACA	1 cut(s)	267
BssMI	GATC	5 cut(s)	111, 156, 220, 360, 582
Bst4CI	ACNGT	1 cut(s)	28
BstAUI	TGTACA	1 cut(s)	267
BstC8I	GCNNGC	2 cut(s)	534, 551
BstDEI	CTNAG	4 cut(s)	102, 186, 624, 702
BstF5I	GGATG	3 cut(s)	178, 415, 526
BstHHI	GCGC	2 cut(s)	555, 615
BstKTI	GATC	5 cut(s)	114, 159, 223, 363, 585
BstMBI	GATC	5 cut(s)	111, 156, 220, 360, 582
BstNSI	RCATGY	1 cut(s)	139
BstSFI	CTRYAG	3 cut(s)	24, 279, 648
BstV1I	GCAGC	2 cut(s)	293, 451
BstX2I	RGATCY	3 cut(s)	111, 156, 360
BstYI	RGATCY	3 cut(s)	111, 156, 360
BsuRI	GGCC	2 cut(s)	445, 707
BtrI	CACGTC	1 cut(s)	14
BtsCI	GGATG	3 cut(s)	178, 415, 526
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	4 cut(s)	141, 406, 621, 699
Cac8I	GCNNGC	2 cut(s)	534, 551
CciI	TCATGA	2 cut(s)	502, 585
CfoI	GCGC	2 cut(s)	555, 615
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	6 cut(s)	31, 136, 326, 365, 503, 586
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	4 cut(s)	102, 186, 624, 702
DpnI	GATC	5 cut(s)	113, 158, 222, 362, 584
DpnII	GATC	5 cut(s)	111, 156, 220, 360, 582
Eco147I	AGGCCT	2 cut(s)	445, 707
Eco32I	GATATC	1 cut(s)	563
EcoRV	GATATC	1 cut(s)	563
FaeI	CATG	6 cut(s)	34, 139, 329, 368, 506, 589
FaiI	YATR	8 cut(s)	7, 32, 137, 327, 366, 504, 587, 630
FatI	CATG	6 cut(s)	30, 135, 325, 364, 502, 585
Fnu4HI	GCNGC	3 cut(s)	107, 282, 465
FokI	GGATG	3 cut(s)	185, 422, 533
Fsp4HI	GCNGC	3 cut(s)	107, 282, 465
FspBI	CTAG	2 cut(s)	50, 709
GlaI	GCGC	2 cut(s)	554, 614
GluI	GCNGC	3 cut(s)	107, 282, 465
GsuI	CTGGAG	2 cut(s)	245, 656
HaeIII	GGCC	2 cut(s)	445, 707
HhaI	GCGC	2 cut(s)	555, 615
Hin1II	CATG	6 cut(s)	34, 139, 329, 368, 506, 589
Hin6I	GCGC	2 cut(s)	553, 613
HinP1I	GCGC	2 cut(s)	553, 613
HindIII	AAGCTT	2 cut(s)	87, 662
HinfI	GANTC	1 cut(s)	197
Hpy166II	GTNNAC	3 cut(s)	141, 476, 655
Hpy188I	TCNGA	5 cut(s)	103, 187, 309, 420, 560
Hpy188III	TCNNGA	5 cut(s)	55, 224, 503, 586, 669
Hpy8I	GTNNAC	3 cut(s)	141, 476, 655
HpyAV	CCTTC	5 cut(s)	192, 253, 304, 340, 583
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	2 cut(s)	13, 472
HpyCH4V	TGCA	5 cut(s)	34, 146, 206, 281, 650
HpyF3I	CTNAG	4 cut(s)	102, 186, 624, 702
HpySE526I	ACGT	2 cut(s)	13, 472
Hsp92II	CATG	6 cut(s)	34, 139, 329, 368, 506, 589
HspAI	GCGC	2 cut(s)	553, 613
Kzo9I	GATC	5 cut(s)	111, 156, 220, 360, 582
LmnI	GCTCC	2 cut(s)	46, 382
LpnPI	CCDG	9 cut(s)	108, 194, 209, 285, 364, 503, 546, 620, 654
Lsp1109I	GCAGC	2 cut(s)	293, 451
LweI	GCATC	2 cut(s)	163, 564
MaeI	CTAG	2 cut(s)	50, 709
MaeII	ACGT	2 cut(s)	13, 472
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	5 cut(s)	113, 158, 222, 362, 584
MbiI	CCGCTC	1 cut(s)	106
MboI	GATC	5 cut(s)	111, 156, 220, 360, 582
MboII	GAAGA	3 cut(s)	163, 166, 403
MfeI	CAATTG	1 cut(s)	35
MflI	RGATCY	3 cut(s)	111, 156, 360
MluCI	AATT	2 cut(s)	35, 540
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	8 cut(s)	187, 336, 435, 456, 499, 511, 608, 697
MroXI	GAANNNNTTC	3 cut(s)	395, 593, 664
MunI	CAATTG	1 cut(s)	35
NdeII	GATC	5 cut(s)	111, 156, 220, 360, 582
NlaIII	CATG	6 cut(s)	34, 139, 329, 368, 506, 589
NlaIV	GGNNCC	1 cut(s)	577
NmuCI	GTSAC	1 cut(s)	251
NspI	RCATGY	1 cut(s)	139
PagI	TCATGA	2 cut(s)	502, 585
PceI	AGGCCT	2 cut(s)	445, 707
PciI	ACATGT	1 cut(s)	135
PdmI	GAANNNNTTC	3 cut(s)	395, 593, 664
PkrI	GCNGC	3 cut(s)	108, 283, 466
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PscI	ACATGT	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	577
PstI	CTGCAG	2 cut(s)	283, 652
PsuI	RGATCY	3 cut(s)	111, 156, 360
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SatI	GCNGC	3 cut(s)	107, 282, 465
Sau3AI	GATC	5 cut(s)	111, 156, 220, 360, 582
SchI	GAGTC	1 cut(s)	206
SfaNI	GCATC	2 cut(s)	163, 564
SfcI	CTRYAG	3 cut(s)	24, 279, 648
SmlI	CTYRAG	2 cut(s)	55, 386
SmoI	CTYRAG	2 cut(s)	55, 386
Sse9I	AATT	2 cut(s)	35, 540
SseBI	AGGCCT	2 cut(s)	445, 707
SsiI	CCGC	2 cut(s)	106, 355
SspMI	CTAG	2 cut(s)	50, 709
StuI	AGGCCT	2 cut(s)	445, 707
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	2 cut(s)	16, 475
TaqI	TCGA	2 cut(s)	84, 600
TasI	AATT	2 cut(s)	35, 540
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	1 cut(s)	109
TscAI	CASTG	4 cut(s)	148, 406, 628, 706
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	2 cut(s)	281, 464
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	2 cut(s)	491, 602
TspRI	CASTG	4 cut(s)	148, 406, 628, 706
XceI	RCATGY	1 cut(s)	139
XmnI	GAANNNNTTC	3 cut(s)	395, 593, 664
XspI	CTAG	2 cut(s)	50, 709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.