Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Reverse (-)

63518558 .. 63520223

Gene Structure 1666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004898

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGATTATTATGTATTTGTCAACATGTTTACTTCAAGGAAGAAGATCCACAAGGATAAGGATGCTCAACCTACTGAGTTTGAGGAGTCTGTTGCACAGTCAATCTTTGATTTGGAGAACACAAACCAAGAGCTGAAAAGTGACTTGAAGGACTTGTACATTAACTCTGCAGCTCTCGTTGATGTTGCTGGAAATCGGAAGGCTGTTGTTATCCATGTTCCTTATAGACTGAGGAAGGCTTACCGCAAGATCCATGTTAGGCTTGTGAGGGAGCTTGAGAAGAAGTTCAGTGGAAAGGATGTGATTCTGATTGCCACACGTAGGATTGTGAGGCCTCCAAAGAAAGGCTCTGCTGCTCAACGTCCGCGCACTCGCACCCTGACTGCTGTTCATGAGGCAATATTGGAGGATGTTGTTTTACCTGCTGAAATTGTTGGCAAGCGCACCAGATATCGCCTTGATGGTTCCAAGATCATGAAGGTTTTCCTTGACCCGAAAGAGCGAAACAACACCGAGTATAAGTTGGAGAGCTTTTCTGCAGTTTACCGTAAGCTTTCAGGAAAAGATGTTGTTTTTGAATACCCCATTACCGAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7e

Protein Analysis

200

Amino Acids

23.04

Weight (kDa)

9.76

Isoelectric Point (pI)

27.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7e	PF01251	15 - 194	1.6e-78	Ribosomal protein S7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	430
AccII	CGCG	1 cut(s)	367
AciI	CCGC	2 cut(s)	244, 365
AclWI	GGATC	2 cut(s)	40, 244
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	321, 344
AflIII	ACRYGT	2 cut(s)	24, 317
AgsI	TTSAA	3 cut(s)	36, 148, 578
AluBI	AGCT	5 cut(s)	133, 173, 274, 531, 553
AluI	AGCT	5 cut(s)	133, 173, 274, 531, 553
AlwI	GGATC	2 cut(s)	40, 244
AoxI	GGCC	2 cut(s)	332, 594
ApeKI	GCWGC	2 cut(s)	170, 353
Asp700I	GAANNNNTTC	2 cut(s)	284, 482
AspLEI	GCGC	2 cut(s)	369, 444
BarI	GAAGNNNNNNTAC	2 cut(s)	140, 172
BbvI	GCAGC	2 cut(s)	182, 340
BccI	CCATC	1 cut(s)	455
BfaI	CTAG	1 cut(s)	598
BfmI	CTRYAG	2 cut(s)	168, 537
BfuAI	ACCTGC	1 cut(s)	430
BisI	GCNGC	2 cut(s)	171, 354
BlsI	GCNGC	2 cut(s)	172, 355
BmiI	GGNNCC	1 cut(s)	466
BmsI	GCATC	1 cut(s)	52
BpuEI	CTTGAG	1 cut(s)	296
BsaAI	YACGTR	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	591
Bsc4I	CCNNNNNNNGG	2 cut(s)	321, 344
BseDI	CCNNGG	1 cut(s)	591
BseGI	GGATG	3 cut(s)	67, 304, 415
BseLI	CCNNNNNNNGG	2 cut(s)	321, 344
BseMII	CTCAG	2 cut(s)	66, 221
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	2 cut(s)	182, 340
Bsh1236I	CGCG	1 cut(s)	367
BshFI	GGCC	2 cut(s)	334, 596
BslI	CCNNNNNNNGG	2 cut(s)	321, 344
BsnI	GGCC	2 cut(s)	334, 596
Bsp1407I	TGTACA	1 cut(s)	156
Bsp143I	GATC	3 cut(s)	45, 249, 471
BspACI	CCGC	2 cut(s)	244, 365
BspANI	GGCC	2 cut(s)	334, 596
BspCNI	CTCAG	2 cut(s)	67, 222
BspFNI	CGCG	1 cut(s)	367
BspHI	TCATGA	2 cut(s)	391, 474
BspLI	GGNNCC	1 cut(s)	466
BspMAI	CTGCAG	2 cut(s)	172, 541
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	2 cut(s)	40, 244
BsrGI	TGTACA	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	591
BssMI	GATC	3 cut(s)	45, 249, 471
Bst4CI	ACNGT	2 cut(s)	99, 548
BstAUI	TGTACA	1 cut(s)	156
BstBAI	YACGTR	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	440
BstDEI	CTNAG	2 cut(s)	75, 230
BstF5I	GGATG	3 cut(s)	67, 304, 415
BstFNI	CGCG	1 cut(s)	367
BstHHI	GCGC	2 cut(s)	369, 444
BstKTI	GATC	3 cut(s)	48, 252, 474
BstMBI	GATC	3 cut(s)	45, 249, 471
BstNSI	RCATGY	1 cut(s)	28
BstSFI	CTRYAG	2 cut(s)	168, 537
BstUI	CGCG	1 cut(s)	367
BstV1I	GCAGC	2 cut(s)	182, 340
BstX2I	RGATCY	2 cut(s)	45, 249
BstYI	RGATCY	2 cut(s)	45, 249
BsuRI	GGCC	2 cut(s)	334, 596
BtsCI	GGATG	3 cut(s)	67, 304, 415
BtsIMutI	CAGTG	1 cut(s)	295
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	1 cut(s)	440
CciI	TCATGA	2 cut(s)	391, 474
CfoI	GCGC	2 cut(s)	369, 444
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	5 cut(s)	25, 215, 254, 392, 475
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	2 cut(s)	75, 230
DpnI	GATC	3 cut(s)	47, 251, 473
DpnII	GATC	3 cut(s)	45, 249, 471
Eco147I	AGGCCT	2 cut(s)	334, 596
Eco32I	GATATC	1 cut(s)	452
EcoRV	GATATC	1 cut(s)	452
FaeI	CATG	5 cut(s)	28, 218, 257, 395, 478
FaiI	YATR	8 cut(s)	12, 26, 216, 225, 255, 393, 476, 519
FatI	CATG	5 cut(s)	24, 214, 253, 391, 474
Fnu4HI	GCNGC	2 cut(s)	171, 354
FokI	GGATG	3 cut(s)	74, 311, 422
Fsp4HI	GCNGC	2 cut(s)	171, 354
FspBI	CTAG	1 cut(s)	598
GlaI	GCGC	2 cut(s)	368, 443
GluI	GCNGC	2 cut(s)	171, 354
HaeIII	GGCC	2 cut(s)	334, 596
HhaI	GCGC	2 cut(s)	369, 444
Hin1II	CATG	5 cut(s)	28, 218, 257, 395, 478
Hin6I	GCGC	2 cut(s)	367, 442
HinP1I	GCGC	2 cut(s)	367, 442
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	551
HinfI	GANTC	2 cut(s)	86, 304
Hpy166II	GTNNAC	3 cut(s)	22, 30, 544
Hpy188I	TCNGA	2 cut(s)	198, 309
Hpy188III	TCNNGA	3 cut(s)	392, 475, 558
Hpy8I	GTNNAC	3 cut(s)	22, 30, 544
HpyAV	CCTTC	4 cut(s)	142, 193, 229, 472
HpyCH4III	ACNGT	2 cut(s)	99, 548
HpyCH4IV	ACGT	2 cut(s)	319, 361
HpyCH4V	TGCA	3 cut(s)	95, 170, 539
HpyF3I	CTNAG	2 cut(s)	75, 230
HpySE526I	ACGT	2 cut(s)	319, 361
Hsp92II	CATG	5 cut(s)	28, 218, 257, 395, 478
HspAI	GCGC	2 cut(s)	367, 442
Kzo9I	GATC	3 cut(s)	45, 249, 471
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	5 cut(s)	174, 392, 435, 460, 543
Lsp1109I	GCAGC	2 cut(s)	182, 340
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	1 cut(s)	598
MaeII	ACGT	2 cut(s)	319, 361
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	3 cut(s)	47, 251, 473
MboI	GATC	3 cut(s)	45, 249, 471
MboII	GAAGA	3 cut(s)	52, 55, 292
MflI	RGATCY	2 cut(s)	45, 249
MluCI	AATT	1 cut(s)	429
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	8 cut(s)	76, 225, 261, 324, 345, 388, 400, 586
MroXI	GAANNNNTTC	2 cut(s)	284, 482
MseI	TTAA	1 cut(s)	162
MvnI	CGCG	1 cut(s)	367
NdeII	GATC	3 cut(s)	45, 249, 471
NlaIII	CATG	5 cut(s)	28, 218, 257, 395, 478
NlaIV	GGNNCC	1 cut(s)	466
NmuCI	GTSAC	1 cut(s)	140
NspI	RCATGY	1 cut(s)	28
PagI	TCATGA	2 cut(s)	391, 474
PceI	AGGCCT	2 cut(s)	334, 596
PciI	ACATGT	1 cut(s)	24
PdmI	GAANNNNTTC	2 cut(s)	284, 482
PfeI	GAWTC	1 cut(s)	304
PkrI	GCNGC	2 cut(s)	172, 355
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Ppu21I	YACGTR	1 cut(s)	320
PscI	ACATGT	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	466
PstI	CTGCAG	2 cut(s)	172, 541
PsuI	RGATCY	2 cut(s)	45, 249
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	2 cut(s)	171, 354
Sau3AI	GATC	3 cut(s)	45, 249, 471
SchI	GAGTC	1 cut(s)	95
SfaNI	GCATC	1 cut(s)	52
SfcI	CTRYAG	2 cut(s)	168, 537
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	1 cut(s)	429
SseBI	AGGCCT	2 cut(s)	334, 596
SsiI	CCGC	2 cut(s)	244, 365
SspI	AATATT	1 cut(s)	402
SspMI	CTAG	1 cut(s)	598
StuI	AGGCCT	2 cut(s)	334, 596
TaaI	ACNGT	2 cut(s)	99, 548
TaiI	ACGT	2 cut(s)	322, 364
TasI	AATT	1 cut(s)	429
TatI	WGTACW	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	2 cut(s)	170, 353
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	380, 491
TspRI	CASTG	1 cut(s)	295
XceI	RCATGY	1 cut(s)	28
XmnI	GAANNNNTTC	2 cut(s)	284, 482
XspI	CTAG	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.