Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Reverse (-)

20431170 .. 20432291

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g22690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGATCAAAATAATGGACGTTGGACCATCTCAGGGACCATTTTGGATAAAAAAAACCTTTATTAAAATGCTTCTGTGTTTTAATATTTGCCCATTGTATGACTTATGGTCCTCCGTTCAATGCAGTCAAGTAGATGTGGCTGGGACTGGGAAGAAAGCTGTTGTTATCCATGTGCCCTATAGATTGAGGAAGGCTTACCGCAAGATCCATGTTCGTCTTGTGAGGGAGCTAGAGAAGAAGTTCAGTGGAAGGGATGTGATCCTGATTGCCACTCGTAGGATAGTGAGGCCTCCTAAGAAGGGTTCTGCCGTTCAACGGCCCCGCACTCGTACCCTAACTGCTGTGCACGAGGCAGTGTTGGAGGATTTTGTTTCGCCTGCTGAGATTGTTGGGAAGCGCATCAGATATCGCCATGATGGATCCAAGATGATGAAGGTGTTTTTGGACCCTAAGGAACGGAACAACACCGAATACAAGCTGGAGAGCTTTTCTGCAGTTTATCGGACGCTTTCAGGAAAGGATGTTGTCTTTGAGTACCCAATAACTGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7e

Protein Analysis

185

Amino Acids

21.23

Weight (kDa)

10.04

Isoelectric Point (pI)

32.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	199, 322
AclWI	GGATC	4 cut(s)	199, 253, 414, 427
AfaI	GTAC	2 cut(s)	331, 536
AfiI	CCNNNNNNNGG	4 cut(s)	32, 276, 299, 315
AgsI	TTSAA	2 cut(s)	119, 314
AhdI	GACNNNNNGTC	1 cut(s)	106
AjuI	GAANNNNNNNTTGG	2 cut(s)	425, 457
AluBI	AGCT	4 cut(s)	158, 229, 478, 486
AluI	AGCT	4 cut(s)	158, 229, 478, 486
Alw21I	GWGCWC	1 cut(s)	348
Alw44I	GTGCAC	1 cut(s)	344
AlwI	GGATC	4 cut(s)	199, 253, 414, 427
AoxI	GGCC	2 cut(s)	287, 317
ApaLI	GTGCAC	1 cut(s)	344
Asp700I	GAANNNNTTC	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	5 cut(s)	23, 35, 108, 318, 445
AvaII	GGWCC	4 cut(s)	23, 35, 108, 445
AxyI	CCTNAGG	1 cut(s)	450
BaeGI	GKGCMC	2 cut(s)	177, 348
BamHI	GGATCC	1 cut(s)	419
BauI	CACGAG	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	348
BccI	CCATC	2 cut(s)	34, 410
BceAI	ACGGC	2 cut(s)	293, 332
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	2 cut(s)	178, 492
Bme18I	GGWCC	4 cut(s)	23, 35, 108, 445
BmeRI	GACNNNNNGTC	1 cut(s)	106
BmgT120I	GGNCC	5 cut(s)	23, 35, 108, 318, 445
BmiI	GGNNCC	4 cut(s)	36, 320, 421, 447
BmrI	ACTGGG	1 cut(s)	156
BmsI	GCATC	2 cut(s)	408, 538
BmuI	ACTGGG	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	500
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 276, 299, 315
Bse1I	ACTGG	1 cut(s)	151
Bse21I	CCTNAGG	1 cut(s)	450
BseGI	GGATG	2 cut(s)	259, 526
BseLI	CCNNNNNNNGG	4 cut(s)	32, 276, 299, 315
BseMII	CTCAG	2 cut(s)	44, 372
BseNI	ACTGG	1 cut(s)	151
BseSI	GKGCMC	2 cut(s)	177, 348
BseYI	CCCAGC	1 cut(s)	140
BshFI	GGCC	2 cut(s)	289, 319
BsiHKAI	GWGCWC	1 cut(s)	348
BslFI	GGGAC	2 cut(s)	48, 157
BslI	CCNNNNNNNGG	4 cut(s)	32, 276, 299, 315
BsmFI	GGGAC	2 cut(s)	48, 157
BsnI	GGCC	2 cut(s)	289, 319
Bsp1286I	GDGCHC	2 cut(s)	177, 348
Bsp143I	GATC	4 cut(s)	3, 204, 258, 419
BspACI	CCGC	2 cut(s)	199, 322
BspANI	GGCC	2 cut(s)	289, 319
BspCNI	CTCAG	2 cut(s)	43, 373
BspLI	GGNNCC	4 cut(s)	36, 320, 421, 447
BspMAI	CTGCAG	1 cut(s)	496
BspPI	GGATC	4 cut(s)	199, 253, 414, 427
BsrI	ACTGG	1 cut(s)	151
BssMI	GATC	4 cut(s)	3, 204, 258, 419
BssSI	CACGAG	1 cut(s)	347
Bst2BI	CACGAG	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	5 cut(s)	30, 294, 381, 450, 552
BstF5I	GGATG	2 cut(s)	259, 526
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	4 cut(s)	6, 207, 261, 422
BstMBI	GATC	4 cut(s)	3, 204, 258, 419
BstSFI	CTRYAG	2 cut(s)	178, 492
BstSLI	GKGCMC	2 cut(s)	177, 348
BstX2I	RGATCY	2 cut(s)	204, 419
BstYI	RGATCY	2 cut(s)	204, 419
Bsu36I	CCTNAGG	1 cut(s)	450
BsuRI	GGCC	2 cut(s)	289, 319
BtsCI	GGATG	2 cut(s)	259, 526
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	250, 360
Cac8I	GCNNGC	1 cut(s)	378
CfoI	GCGC	1 cut(s)	399
Cfr13I	GGNCC	5 cut(s)	23, 35, 108, 318, 445
CseI	GACGC	1 cut(s)	514
Csp6I	GTAC	2 cut(s)	330, 535
CviAII	CATG	3 cut(s)	170, 209, 413
CviJI	RGCY	8 cut(s)	140, 158, 194, 229, 289, 319, 478, 486
CviKI_1	RGCY	8 cut(s)	140, 158, 194, 229, 289, 319, 478, 486
CviQI	GTAC	2 cut(s)	330, 535
DdeI	CTNAG	5 cut(s)	30, 294, 381, 450, 552
DpnI	GATC	4 cut(s)	5, 206, 260, 421
DpnII	GATC	4 cut(s)	3, 204, 258, 419
DriI	GACNNNNNGTC	1 cut(s)	106
Eam1105I	GACNNNNNGTC	1 cut(s)	106
Eco147I	AGGCCT	1 cut(s)	289
Eco32I	GATATC	1 cut(s)	407
Eco47I	GGWCC	4 cut(s)	23, 35, 108, 445
Eco81I	CCTNAGG	1 cut(s)	450
EcoRV	GATATC	1 cut(s)	407
FaeI	CATG	3 cut(s)	173, 212, 416
FaiI	YATR	6 cut(s)	99, 106, 171, 180, 210, 414
FaqI	GGGAC	2 cut(s)	48, 157
FatI	CATG	3 cut(s)	169, 208, 412
FauI	CCCGC	1 cut(s)	329
FbaI	TGATCA	1 cut(s)	3
FokI	GGATG	2 cut(s)	266, 533
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	1 cut(s)	398
GsaI	CCCAGC	1 cut(s)	144
GsuI	CTGGAG	1 cut(s)	500
HaeIII	GGCC	2 cut(s)	289, 319
HgaI	GACGC	1 cut(s)	514
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	3 cut(s)	173, 212, 416
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	2 cut(s)	404, 504
Hpy188III	TCNNGA	2 cut(s)	262, 513
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	4 cut(s)	184, 243, 292, 427
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	3 cut(s)	123, 346, 494
HpyF3I	CTNAG	5 cut(s)	30, 294, 381, 450, 552
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	3 cut(s)	173, 212, 416
HspAI	GCGC	1 cut(s)	397
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 204, 258, 419
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	7 cut(s)	17, 126, 132, 275, 390, 464, 498
LweI	GCATC	2 cut(s)	408, 538
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	1 cut(s)	18
MalI	GATC	4 cut(s)	5, 206, 260, 421
MboI	GATC	4 cut(s)	3, 204, 258, 419
MboII	GAAGA	2 cut(s)	163, 247
MflI	RGATCY	2 cut(s)	204, 419
MhlI	GDGCHC	2 cut(s)	177, 348
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	7 cut(s)	121, 180, 216, 279, 300, 343, 355
MroXI	GAANNNNTTC	1 cut(s)	239
MseI	TTAA	2 cut(s)	63, 81
NdeII	GATC	4 cut(s)	3, 204, 258, 419
NlaIII	CATG	3 cut(s)	173, 212, 416
NlaIV	GGNNCC	4 cut(s)	36, 320, 421, 447
PceI	AGGCCT	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	239
PspFI	CCCAGC	1 cut(s)	140
PspN4I	GGNNCC	4 cut(s)	36, 320, 421, 447
PspPI	GGNCC	5 cut(s)	23, 35, 108, 318, 445
PstI	CTGCAG	1 cut(s)	496
PsuI	RGATCY	2 cut(s)	204, 419
RsaI	GTAC	2 cut(s)	331, 536
RsaNI	GTAC	2 cut(s)	330, 535
SaqAI	TTAA	2 cut(s)	63, 81
Sau3AI	GATC	4 cut(s)	3, 204, 258, 419
Sau96I	GGNCC	5 cut(s)	23, 35, 108, 318, 445
SduI	GDGCHC	2 cut(s)	177, 348
SetI	ASST	7 cut(s)	21, 59, 160, 231, 438, 480, 488
SfaNI	GCATC	2 cut(s)	408, 538
SfcI	CTRYAG	2 cut(s)	178, 492
SinI	GGWCC	4 cut(s)	23, 35, 108, 445
SseBI	AGGCCT	1 cut(s)	289
SsiI	CCGC	2 cut(s)	199, 322
SspI	AATATT	1 cut(s)	85
SspMI	CTAG	1 cut(s)	230
StuI	AGGCCT	1 cut(s)	289
TaiI	ACGT	1 cut(s)	21
Tru1I	TTAA	2 cut(s)	63, 81
Tru9I	TTAA	2 cut(s)	63, 81
TscAI	CASTG	2 cut(s)	250, 360
TspDTI	ATGAA	1 cut(s)	446
TspGWI	ACGGA	2 cut(s)	103, 472
TspRI	CASTG	2 cut(s)	250, 360
VneI	GTGCAC	1 cut(s)	344
VpaK11BI	GGWCC	4 cut(s)	23, 35, 108, 445
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.