Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Forward (+)

27985166 .. 27987568

Gene Structure 2403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1256100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTTTACCTCAAGAAAGAAGATTCACAAGGATAAGGATGCTGAACCCACTGAATTTGAAGAGTCTGTTGCACAGGCGATATTTGATTTGGAAAACACAAACCAGGAACTGAAAAGTGACCTTAAGGATCTATATATAAATTCAGCAATTCAAGTAGATGTGGCTGGGACTGGGAAGAAATCTGTTGTTATCCATGTGCCCTATAGATTGAGGAAGGCTTACCGCAAGATCCATGTTCGTCTTGTGAGGGAGCTAGAGAAGAAGTTCAGTGGAAGGGATGTGATCCTGATTGCCACTCGTAGGATAGTGAGGCCTCCTAAGAAGGGTTCTGCCATTCAACGGCCCCGCACTCGTACCCTAACTGGTGTGCACGAGGCAGTGTTGGAGGATGTTGTTTCGCCTGCTGAGATTGTTGGAAAGCGCATCAGATATCGCCATGATGGATCCAAGATAATGAAGGTGTTTTTGGACCCTAAGGAACGGAACAACACCGAATACAAGTTGGAGAGCTTTTCTGCAGTTTATCGGACGCTTTCAGGAAAGGATGTTGTCTTTGAGTACCCAATAACTGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7e

Protein Analysis

193

Amino Acids

22.1

Weight (kDa)

9.76

Isoelectric Point (pI)

24.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7e	PF01251	7 - 187	1.2e-76	Ribosomal protein S7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	223, 346
AclWI	GGATC	5 cut(s)	135, 223, 277, 438, 451
AcsI	RAATTY	2 cut(s)	53, 139
AfaI	GTAC	2 cut(s)	355, 560
AfiI	CCNNNNNNNGG	3 cut(s)	300, 323, 339
AflII	CTTAAG	1 cut(s)	122
AgsI	TTSAA	3 cut(s)	59, 152, 338
AjnI	CCWGG	1 cut(s)	102
AjuI	GAANNNNNNNTTGG	2 cut(s)	449, 481
AluBI	AGCT	2 cut(s)	253, 510
AluI	AGCT	2 cut(s)	253, 510
Alw21I	GWGCWC	1 cut(s)	372
Alw44I	GTGCAC	1 cut(s)	368
AlwI	GGATC	5 cut(s)	135, 223, 277, 438, 451
AlwNI	CAGNNNCTG	1 cut(s)	109
AoxI	GGCC	2 cut(s)	311, 341
ApaLI	GTGCAC	1 cut(s)	368
ApoI	RAATTY	2 cut(s)	53, 139
Asp700I	GAANNNNTTC	1 cut(s)	263
AspLEI	GCGC	1 cut(s)	423
AspS9I	GGNCC	2 cut(s)	342, 469
AvaII	GGWCC	1 cut(s)	469
AxyI	CCTNAGG	1 cut(s)	474
BaeGI	GKGCMC	2 cut(s)	201, 372
BamHI	GGATCC	1 cut(s)	443
BauI	CACGAG	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	372
BccI	CCATC	1 cut(s)	434
BceAI	ACGGC	1 cut(s)	356
BciT130I	CCWGG	1 cut(s)	104
BfaI	CTAG	1 cut(s)	254
BfmI	CTRYAG	2 cut(s)	202, 516
BfrI	CTTAAG	1 cut(s)	122
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	2 cut(s)	342, 469
BmiI	GGNNCC	3 cut(s)	344, 445, 471
BmrFI	CCNGG	1 cut(s)	104
BmrI	ACTGGG	1 cut(s)	180
BmsI	GCATC	3 cut(s)	28, 432, 562
BmuI	ACTGGG	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	3 cut(s)	300, 323, 339
Bse1I	ACTGG	2 cut(s)	175, 367
Bse21I	CCTNAGG	1 cut(s)	474
BseBI	CCWGG	1 cut(s)	104
BseGI	GGATG	4 cut(s)	43, 283, 394, 550
BseLI	CCNNNNNNNGG	3 cut(s)	300, 323, 339
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	2 cut(s)	175, 367
BseSI	GKGCMC	2 cut(s)	201, 372
BseYI	CCCAGC	1 cut(s)	164
BshFI	GGCC	2 cut(s)	313, 343
BsiHKAI	GWGCWC	1 cut(s)	372
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	3 cut(s)	300, 323, 339
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	2 cut(s)	313, 343
Bsp1286I	GDGCHC	2 cut(s)	201, 372
Bsp143I	GATC	4 cut(s)	127, 228, 282, 443
BspACI	CCGC	2 cut(s)	223, 346
BspANI	GGCC	2 cut(s)	313, 343
BspCNI	CTCAG	1 cut(s)	397
BspLI	GGNNCC	3 cut(s)	344, 445, 471
BspMAI	CTGCAG	1 cut(s)	520
BspPI	GGATC	5 cut(s)	135, 223, 277, 438, 451
BspTI	CTTAAG	1 cut(s)	122
BsrI	ACTGG	2 cut(s)	175, 367
BssMI	GATC	4 cut(s)	127, 228, 282, 443
BssSI	CACGAG	1 cut(s)	371
Bst2BI	CACGAG	1 cut(s)	371
Bst2UI	CCWGG	1 cut(s)	104
Bst6I	CTCTTC	1 cut(s)	54
BstAFI	CTTAAG	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	4 cut(s)	318, 405, 474, 576
BstF5I	GGATG	4 cut(s)	43, 283, 394, 550
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	4 cut(s)	130, 231, 285, 446
BstMBI	GATC	4 cut(s)	127, 228, 282, 443
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	2 cut(s)	202, 516
BstSLI	GKGCMC	2 cut(s)	201, 372
BstX2I	RGATCY	3 cut(s)	127, 228, 443
BstYI	RGATCY	3 cut(s)	127, 228, 443
Bsu36I	CCTNAGG	1 cut(s)	474
BsuRI	GGCC	2 cut(s)	313, 343
BtsCI	GGATG	4 cut(s)	43, 283, 394, 550
BtsI	GCAGTG	1 cut(s)	384
BtsIMutI	CAGTG	3 cut(s)	48, 274, 384
Cac8I	GCNNGC	1 cut(s)	402
CaiI	CAGNNNCTG	1 cut(s)	109
CfoI	GCGC	1 cut(s)	423
Cfr13I	GGNCC	2 cut(s)	342, 469
CseI	GACGC	1 cut(s)	538
Csp6I	GTAC	2 cut(s)	354, 559
CspCI	CAANNNNNGTGG	2 cut(s)	37, 72
CviAII	CATG	3 cut(s)	194, 233, 437
CviJI	RGCY	6 cut(s)	164, 218, 253, 313, 343, 510
CviKI_1	RGCY	6 cut(s)	164, 218, 253, 313, 343, 510
CviQI	GTAC	2 cut(s)	354, 559
DdeI	CTNAG	4 cut(s)	318, 405, 474, 576
DpnI	GATC	4 cut(s)	129, 230, 284, 445
DpnII	GATC	4 cut(s)	127, 228, 282, 443
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco147I	AGGCCT	1 cut(s)	313
Eco32I	GATATC	1 cut(s)	431
Eco47I	GGWCC	1 cut(s)	469
Eco81I	CCTNAGG	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	102
EcoRV	GATATC	1 cut(s)	431
FaeI	CATG	3 cut(s)	197, 236, 440
FaiI	YATR	7 cut(s)	133, 135, 137, 195, 204, 234, 438
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	3 cut(s)	193, 232, 436
FauI	CCCGC	1 cut(s)	353
FokI	GGATG	4 cut(s)	50, 290, 401, 557
FspBI	CTAG	1 cut(s)	254
GlaI	GCGC	1 cut(s)	422
GsaI	CCCAGC	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	313, 343
HgaI	GACGC	1 cut(s)	538
HhaI	GCGC	1 cut(s)	423
Hin1II	CATG	3 cut(s)	197, 236, 440
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HinfI	GANTC	2 cut(s)	22, 62
Hpy166II	GTNNAC	2 cut(s)	6, 370
Hpy188I	TCNGA	2 cut(s)	428, 528
Hpy188III	TCNNGA	3 cut(s)	12, 286, 537
Hpy8I	GTNNAC	2 cut(s)	6, 370
HpyAV	CCTTC	4 cut(s)	208, 267, 316, 451
HpyCH4V	TGCA	3 cut(s)	71, 370, 518
HpyF3I	CTNAG	4 cut(s)	318, 405, 474, 576
Hsp92II	CATG	3 cut(s)	197, 236, 440
HspAI	GCGC	1 cut(s)	421
Kzo9I	GATC	4 cut(s)	127, 228, 282, 443
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	9 cut(s)	59, 89, 116, 150, 156, 299, 348, 414, 522
LweI	GCATC	3 cut(s)	28, 432, 562
MaeI	CTAG	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	4 cut(s)	129, 230, 284, 445
MboI	GATC	4 cut(s)	127, 228, 282, 443
MboII	GAAGA	4 cut(s)	31, 71, 187, 271
MflI	RGATCY	3 cut(s)	127, 228, 443
MhlI	GDGCHC	2 cut(s)	201, 372
MluCI	AATT	3 cut(s)	53, 139, 147
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	3 cut(s)	363, 394, 483
MnlI	CCTC	7 cut(s)	19, 204, 240, 303, 324, 367, 379
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	1 cut(s)	123
MspCI	CTTAAG	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
NdeII	GATC	4 cut(s)	127, 228, 282, 443
NlaIII	CATG	3 cut(s)	197, 236, 440
NlaIV	GGNNCC	3 cut(s)	344, 445, 471
NmuCI	GTSAC	1 cut(s)	116
PceI	AGGCCT	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	102
PspFI	CCCAGC	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	3 cut(s)	344, 445, 471
PspPI	GGNCC	2 cut(s)	342, 469
PstI	CTGCAG	1 cut(s)	520
PstNI	CAGNNNCTG	1 cut(s)	109
PsuI	RGATCY	3 cut(s)	127, 228, 443
RsaI	GTAC	2 cut(s)	355, 560
RsaNI	GTAC	2 cut(s)	354, 559
SaqAI	TTAA	1 cut(s)	123
Sau3AI	GATC	4 cut(s)	127, 228, 282, 443
Sau96I	GGNCC	2 cut(s)	342, 469
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	2 cut(s)	201, 372
SetI	ASST	5 cut(s)	11, 123, 255, 462, 512
SfaNI	GCATC	3 cut(s)	28, 432, 562
SfcI	CTRYAG	2 cut(s)	202, 516
SinI	GGWCC	1 cut(s)	469
SmlI	CTYRAG	2 cut(s)	10, 122
SmoI	CTYRAG	2 cut(s)	10, 122
Sse9I	AATT	3 cut(s)	53, 139, 147
SseBI	AGGCCT	1 cut(s)	313
SsiI	CCGC	2 cut(s)	223, 346
SspMI	CTAG	1 cut(s)	254
StuI	AGGCCT	1 cut(s)	313
StyD4I	CCNGG	1 cut(s)	102
TasI	AATT	3 cut(s)	53, 139, 147
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	3 cut(s)	55, 274, 384
TseFI	GTSAC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	1 cut(s)	470
TspGWI	ACGGA	1 cut(s)	496
TspRI	CASTG	3 cut(s)	55, 274, 384
Vha464I	CTTAAG	1 cut(s)	122
VneI	GTGCAC	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	469
XapI	RAATTY	2 cut(s)	53, 139
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.