Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Forward (+)

5852242 .. 5854581

Gene Structure 2340 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG075400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTTTCATGCTTGTATCTTCAGATTTGTCAACATGTTCACTTCAAGGAAGAAGATCCACAAGGATAAGGATGCTGAACCTACTGAGTTTGAGGAGTCTGTTGCACAGTCAATCTTTGATTTGGAGAACACAAACCAAGAGCTGAAAAGTGACTTGAAGGACTTGTACATTAACTCTGCAGCTCTCGTTGATGTTGCTGGAAATCGGAAGGCTGTTGTTATCCATGTTCCTTATAGACTGAGGAAGGCTTACCGCAAGATCCATGTTAGGCTTGTGAGGGAGCTTGAGAAGAAGTTCAGTGGAAAGGATGTGATTCTGATTGCCACACGTAGGATTGTGAGGCCTCCGAAGAAAGGCTCTGCTGCTCAACGTCCGCGCACTCGCACCCTGACTGCTGTTCATGAGGCAATATTGGAGGATGTTGTTTTACCTGCTGAAATTGTTGGCAAGCGCACCAGATATCGCCTTGATGGTTCCAAGATCATGAAGGTTTTCCTTGACCCGAAAGAGCGAAACAACACCGAGTATAAGTTGGAGAGCTTTTCTGCAGTTTACCGTAAGCTTTCAGGAAAAGATGTTGTTTTCGAATACCCCATCACCGAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7e

Protein Analysis

202

Amino Acids

23.38

Weight (kDa)

9.81

Isoelectric Point (pI)

29.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7e	PF01251	18 - 197	1.4e-78	Ribosomal protein S7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	439
AccII	CGCG	1 cut(s)	376
AciI	CCGC	2 cut(s)	253, 374
AclWI	GGATC	2 cut(s)	49, 253
AcuI	CTGAAG	1 cut(s)	4
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	330, 353
AflIII	ACRYGT	2 cut(s)	33, 326
AgsI	TTSAA	2 cut(s)	45, 157
AluBI	AGCT	5 cut(s)	142, 182, 283, 540, 562
AluI	AGCT	5 cut(s)	142, 182, 283, 540, 562
AlwI	GGATC	2 cut(s)	49, 253
AoxI	GGCC	2 cut(s)	341, 603
ApeKI	GCWGC	2 cut(s)	179, 362
Asp700I	GAANNNNTTC	2 cut(s)	293, 491
AspLEI	GCGC	2 cut(s)	378, 453
AsuHPI	GGTGA	1 cut(s)	589
AsuII	TTCGAA	1 cut(s)	585
BarI	GAAGNNNNNNTAC	2 cut(s)	149, 181
BbvI	GCAGC	2 cut(s)	191, 349
BccI	CCATC	2 cut(s)	464, 602
BfaI	CTAG	1 cut(s)	607
BfmI	CTRYAG	2 cut(s)	177, 546
BfuAI	ACCTGC	1 cut(s)	439
BisI	GCNGC	2 cut(s)	180, 363
BlsI	GCNGC	2 cut(s)	181, 364
BmiI	GGNNCC	1 cut(s)	475
BmsI	GCATC	1 cut(s)	61
Bpu14I	TTCGAA	1 cut(s)	585
BpuEI	CTTGAG	1 cut(s)	305
BsaAI	YACGTR	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	600
Bsc4I	CCNNNNNNNGG	2 cut(s)	330, 353
BseDI	CCNNGG	1 cut(s)	600
BseGI	GGATG	3 cut(s)	76, 313, 424
BseLI	CCNNNNNNNGG	2 cut(s)	330, 353
BseMII	CTCAG	2 cut(s)	75, 230
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	191, 349
Bsh1236I	CGCG	1 cut(s)	376
BshFI	GGCC	2 cut(s)	343, 605
BslI	CCNNNNNNNGG	2 cut(s)	330, 353
BsnI	GGCC	2 cut(s)	343, 605
Bsp119I	TTCGAA	1 cut(s)	585
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	54, 258, 480
BspACI	CCGC	2 cut(s)	253, 374
BspANI	GGCC	2 cut(s)	343, 605
BspCNI	CTCAG	2 cut(s)	76, 231
BspFNI	CGCG	1 cut(s)	376
BspHI	TCATGA	2 cut(s)	400, 483
BspLI	GGNNCC	1 cut(s)	475
BspMAI	CTGCAG	2 cut(s)	181, 550
BspMI	ACCTGC	1 cut(s)	439
BspPI	GGATC	2 cut(s)	49, 253
BspT104I	TTCGAA	1 cut(s)	585
BsrGI	TGTACA	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	600
BssMI	GATC	3 cut(s)	54, 258, 480
Bst4CI	ACNGT	2 cut(s)	108, 557
BstAUI	TGTACA	1 cut(s)	165
BstBAI	YACGTR	1 cut(s)	329
BstBI	TTCGAA	1 cut(s)	585
BstC8I	GCNNGC	1 cut(s)	449
BstDEI	CTNAG	2 cut(s)	84, 239
BstF5I	GGATG	3 cut(s)	76, 313, 424
BstFNI	CGCG	1 cut(s)	376
BstHHI	GCGC	2 cut(s)	378, 453
BstKTI	GATC	3 cut(s)	57, 261, 483
BstMBI	GATC	3 cut(s)	54, 258, 480
BstNSI	RCATGY	1 cut(s)	37
BstSFI	CTRYAG	2 cut(s)	177, 546
BstUI	CGCG	1 cut(s)	376
BstV1I	GCAGC	2 cut(s)	191, 349
BstX2I	RGATCY	2 cut(s)	54, 258
BstYI	RGATCY	2 cut(s)	54, 258
BsuRI	GGCC	2 cut(s)	343, 605
BtsCI	GGATG	3 cut(s)	76, 313, 424
BtsIMutI	CAGTG	1 cut(s)	304
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	449
CciI	TCATGA	2 cut(s)	400, 483
CfoI	GCGC	2 cut(s)	378, 453
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	6 cut(s)	8, 34, 224, 263, 401, 484
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	2 cut(s)	84, 239
DpnI	GATC	3 cut(s)	56, 260, 482
DpnII	GATC	3 cut(s)	54, 258, 480
Eco147I	AGGCCT	2 cut(s)	343, 605
Eco32I	GATATC	1 cut(s)	461
Eco57I	CTGAAG	1 cut(s)	4
EcoRV	GATATC	1 cut(s)	461
FaeI	CATG	6 cut(s)	11, 37, 227, 266, 404, 487
FaiI	YATR	8 cut(s)	9, 35, 225, 234, 264, 402, 485, 528
FatI	CATG	6 cut(s)	7, 33, 223, 262, 400, 483
Fnu4HI	GCNGC	2 cut(s)	180, 363
FokI	GGATG	3 cut(s)	83, 320, 431
Fsp4HI	GCNGC	2 cut(s)	180, 363
FspBI	CTAG	1 cut(s)	607
GlaI	GCGC	2 cut(s)	377, 452
GluI	GCNGC	2 cut(s)	180, 363
HaeIII	GGCC	2 cut(s)	343, 605
HhaI	GCGC	2 cut(s)	378, 453
Hin1II	CATG	6 cut(s)	11, 37, 227, 266, 404, 487
Hin6I	GCGC	2 cut(s)	376, 451
HinP1I	GCGC	2 cut(s)	376, 451
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	560
HinfI	GANTC	2 cut(s)	95, 313
HphI	GGTGA	1 cut(s)	589
Hpy166II	GTNNAC	3 cut(s)	31, 39, 553
Hpy188I	TCNGA	4 cut(s)	23, 207, 318, 348
Hpy188III	TCNNGA	3 cut(s)	401, 484, 567
Hpy8I	GTNNAC	3 cut(s)	31, 39, 553
HpyAV	CCTTC	4 cut(s)	151, 202, 238, 481
HpyCH4III	ACNGT	2 cut(s)	108, 557
HpyCH4IV	ACGT	2 cut(s)	328, 370
HpyCH4V	TGCA	3 cut(s)	104, 179, 548
HpyF3I	CTNAG	2 cut(s)	84, 239
HpySE526I	ACGT	2 cut(s)	328, 370
Hsp92II	CATG	6 cut(s)	11, 37, 227, 266, 404, 487
HspAI	GCGC	2 cut(s)	376, 451
Kzo9I	GATC	3 cut(s)	54, 258, 480
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	5 cut(s)	183, 401, 444, 469, 552
Lsp1109I	GCAGC	2 cut(s)	191, 349
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	1 cut(s)	607
MaeII	ACGT	2 cut(s)	328, 370
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	3 cut(s)	56, 260, 482
MboI	GATC	3 cut(s)	54, 258, 480
MboII	GAAGA	5 cut(s)	10, 61, 64, 301, 361
MflI	RGATCY	2 cut(s)	54, 258
MluCI	AATT	1 cut(s)	438
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	8 cut(s)	85, 234, 270, 333, 354, 397, 409, 595
MroXI	GAANNNNTTC	2 cut(s)	293, 491
MseI	TTAA	1 cut(s)	171
MvnI	CGCG	1 cut(s)	376
NdeII	GATC	3 cut(s)	54, 258, 480
NlaIII	CATG	6 cut(s)	11, 37, 227, 266, 404, 487
NlaIV	GGNNCC	1 cut(s)	475
NmuCI	GTSAC	1 cut(s)	149
NspI	RCATGY	1 cut(s)	37
NspV	TTCGAA	1 cut(s)	585
PagI	TCATGA	2 cut(s)	400, 483
PceI	AGGCCT	2 cut(s)	343, 605
PciI	ACATGT	1 cut(s)	33
PdmI	GAANNNNTTC	2 cut(s)	293, 491
PfeI	GAWTC	1 cut(s)	313
PkrI	GCNGC	2 cut(s)	181, 364
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Ppu21I	YACGTR	1 cut(s)	329
PscI	ACATGT	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	475
PstI	CTGCAG	2 cut(s)	181, 550
PsuI	RGATCY	2 cut(s)	54, 258
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	2 cut(s)	180, 363
Sau3AI	GATC	3 cut(s)	54, 258, 480
SchI	GAGTC	1 cut(s)	104
SfaNI	GCATC	1 cut(s)	61
SfcI	CTRYAG	2 cut(s)	177, 546
SfuI	TTCGAA	1 cut(s)	585
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	1 cut(s)	438
SseBI	AGGCCT	2 cut(s)	343, 605
SsiI	CCGC	2 cut(s)	253, 374
SspI	AATATT	1 cut(s)	411
SspMI	CTAG	1 cut(s)	607
StuI	AGGCCT	2 cut(s)	343, 605
TaaI	ACNGT	2 cut(s)	108, 557
TaiI	ACGT	2 cut(s)	331, 373
TaqI	TCGA	1 cut(s)	585
TasI	AATT	1 cut(s)	438
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	1 cut(s)	313
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	2 cut(s)	179, 362
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	2 cut(s)	389, 500
TspRI	CASTG	1 cut(s)	304
XceI	RCATGY	1 cut(s)	37
XmnI	GAANNNNTTC	2 cut(s)	293, 491
XspI	CTAG	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.