Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Forward (+)

5392556 .. 5394479

Gene Structure 1924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG075600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGATTAGTAGTCTAGTTGTACATCATAATGCATTTTTCATAGGTGGTGGTATTAGTAGTACTCTTCCTCTTGCTCAATGTTATTCATTTTTTCGGGTTTCAGGATTAAGGAGAACTGGGAAGAGTTGCAGATTGAGATGGTTGAACTATCTGAAACCAGATGTTAAGCGCGGAAATCTTACTCCGGAAGAACAGCTGTTGATTCTTGACCTCCACTCCAAGTGGGGAAATAGGTGGTCGAAAATTGCGCAATACTTACCCGGAAGAACAGACAATGAAATCAAGAACTACTGGAGAACTAGAGTGCAGAAACAAGCAAAGCATCTTAAGATTGATACCAACAGCACAGAGTTTCAGAATATTATTAGGTGCTTTTGGATGCCTAGATTGCTGCAGAAGATAGGAGACCAAAACCAATTAGCTGCTTCTCATCAGCATTCAATAACAGCACCACCATCACAGCCACAATTTACTGAGCAAGGAGCTGTTGACATGAGCAGATTTGTATACGATTTGGATATCGAAAAGCAGAACACAGAATGCATTTTGCCTTCAGAGTTACCAATGGAGATCTCAAACACTTCTCAATTTTCAGAATATTGCCCTTCTAGTTCTTTTGGTGGAGCCATAGTGCGCAATGATCACTATGTAAACAACAATAGCCACGACATGGAAGTCTTCAACTTGGGGAATTCTGCTGCTGCTGATACTTGCTATGTGCCAGAAAGCGAAAGCAACTGGCTTGAAATTGATTTTTCATGTAGCATGTGGAACATGGATGAATTGTTGCAAAGGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

266

Amino Acids

30.58

Weight (kDa)

6.45

Isoelectric Point (pI)

56.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	57 - 100	1.3e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	61 - 108	5.8e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	674
Acc16I	TGCGCA	2 cut(s)	249, 635
AccB7I	CCANNNNNTGG	1 cut(s)	670
AccI	GTMKAC	1 cut(s)	507
AccII	CGCG	1 cut(s)	171
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	691
AcuI	CTGAAG	1 cut(s)	537
AfaI	GTAC	2 cut(s)	21, 61
AfiI	CCNNNNNNNGG	1 cut(s)	670
AflII	CTTAAG	1 cut(s)	326
AgsI	TTSAA	4 cut(s)	145, 441, 682, 746
AluBI	AGCT	3 cut(s)	196, 422, 485
AluI	AGCT	3 cut(s)	196, 422, 485
Alw26I	GTCTC	1 cut(s)	399
Aor13HI	TCCGGA	1 cut(s)	184
ApeKI	GCWGC	4 cut(s)	391, 422, 698, 701
ApoI	RAATTY	1 cut(s)	691
AspLEI	GCGC	3 cut(s)	171, 250, 636
AsuC2I	CCSGG	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	670
BbvI	GCAGC	4 cut(s)	378, 409, 685, 688
BccI	CCATC	2 cut(s)	132, 463
BclI	TGATCA	1 cut(s)	640
BcnI	CCSGG	1 cut(s)	261
BcoDI	GTCTC	1 cut(s)	399
BfaI	CTAG	4 cut(s)	14, 300, 384, 609
BfmI	CTRYAG	1 cut(s)	392
BfrI	CTTAAG	1 cut(s)	326
BglII	AGATCT	1 cut(s)	570
BisI	GCNGC	4 cut(s)	392, 423, 699, 702
BlsI	GCNGC	4 cut(s)	393, 424, 700, 703
BmcAI	AGTACT	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	261
BmiI	GGNNCC	1 cut(s)	625
BmrFI	CCNGG	1 cut(s)	261
BmrI	ACTGGG	1 cut(s)	126
BmsI	GCATC	2 cut(s)	331, 369
BmuI	ACTGGG	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	670
BpmI	CTGGAG	1 cut(s)	313
BpuMI	CCSGG	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	399
BsaWI	WCCGGW	1 cut(s)	184
BsaXI	ACNNNNNCTCC	4 cut(s)	200, 230, 615, 645
Bsc4I	CCNNNNNNNGG	1 cut(s)	670
Bse1I	ACTGG	3 cut(s)	121, 296, 743
Bse3DI	GCAATG	1 cut(s)	643
BseAI	TCCGGA	1 cut(s)	184
BseGI	GGATG	2 cut(s)	384, 784
BseLI	CCNNNNNNNGG	1 cut(s)	670
BseMI	GCAATG	1 cut(s)	643
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	3 cut(s)	121, 296, 743
BseXI	GCAGC	4 cut(s)	378, 409, 685, 688
BsgI	GTGCAG	1 cut(s)	326
Bsh1236I	CGCG	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	185, 261
BslI	CCNNNNNNNGG	1 cut(s)	670
BsmAI	GTCTC	1 cut(s)	399
BsmI	GAATGC	2 cut(s)	436, 545
Bso31I	GGTCTC	1 cut(s)	399
Bsp13I	TCCGGA	1 cut(s)	184
Bsp1407I	TGTACA	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	570, 640
BspACI	CCGC	1 cut(s)	171
BspCNI	CTCAG	1 cut(s)	466
BspEI	TCCGGA	1 cut(s)	184
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	625
BspMAI	CTGCAG	1 cut(s)	396
BspTI	CTTAAG	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	399
BsrDI	GCAATG	1 cut(s)	643
BsrGI	TGTACA	1 cut(s)	19
BsrI	ACTGG	3 cut(s)	121, 296, 743
BssMI	GATC	2 cut(s)	570, 640
BssNAI	GTATAC	1 cut(s)	508
Bst1107I	GTATAC	1 cut(s)	508
Bst6I	CTCTTC	2 cut(s)	69, 116
BstAFI	CTTAAG	1 cut(s)	326
BstAUI	TGTACA	1 cut(s)	19
BstDEI	CTNAG	1 cut(s)	474
BstF5I	GGATG	2 cut(s)	384, 784
BstFNI	CGCG	1 cut(s)	171
BstHHI	GCGC	3 cut(s)	171, 250, 636
BstKTI	GATC	2 cut(s)	573, 643
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	2 cut(s)	570, 640
BstMWI	GCNNNNNNNGC	1 cut(s)	388
BstNSI	RCATGY	1 cut(s)	769
BstSCI	CCNGG	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	392
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	4 cut(s)	378, 409, 685, 688
BstV2I	GAAGAC	1 cut(s)	670
BstX2I	RGATCY	1 cut(s)	570
BstYI	RGATCY	1 cut(s)	570
BstZ17I	GTATAC	1 cut(s)	508
BtsCI	GGATG	2 cut(s)	384, 784
CfoI	GCGC	3 cut(s)	171, 250, 636
Csp6I	GTAC	2 cut(s)	20, 60
CviAII	CATG	5 cut(s)	493, 670, 759, 766, 775
CviJI	RGCY	7 cut(s)	196, 422, 463, 485, 626, 663, 742
CviKI_1	RGCY	7 cut(s)	196, 422, 463, 485, 626, 663, 742
CviQI	GTAC	2 cut(s)	20, 60
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	2 cut(s)	572, 642
DpnII	GATC	2 cut(s)	570, 640
DrdI	GACNNNNNNGTC	1 cut(s)	674
DseDI	GACNNNNNNGTC	1 cut(s)	674
Eam1104I	CTCTTC	2 cut(s)	69, 116
EarI	CTCTTC	2 cut(s)	69, 116
Eco31I	GGTCTC	1 cut(s)	399
Eco32I	GATATC	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	537
EcoRI	GAATTC	1 cut(s)	691
EcoRV	GATATC	1 cut(s)	520
EcoT22I	ATGCAT	2 cut(s)	34, 545
FaeI	CATG	5 cut(s)	496, 673, 762, 769, 778
FatI	CATG	5 cut(s)	492, 669, 758, 765, 774
FbaI	TGATCA	1 cut(s)	640
FblI	GTMKAC	1 cut(s)	507
Fnu4HI	GCNGC	4 cut(s)	392, 423, 699, 702
FokI	GGATG	2 cut(s)	391, 791
Fsp4HI	GCNGC	4 cut(s)	392, 423, 699, 702
FspBI	CTAG	4 cut(s)	14, 300, 384, 609
FspI	TGCGCA	2 cut(s)	249, 635
GlaI	GCGC	3 cut(s)	170, 249, 635
GluI	GCNGC	4 cut(s)	392, 423, 699, 702
GsuI	CTGGAG	1 cut(s)	313
HapII	CCGG	2 cut(s)	185, 261
HhaI	GCGC	3 cut(s)	171, 250, 636
Hin1II	CATG	5 cut(s)	496, 673, 762, 769, 778
Hin6I	GCGC	3 cut(s)	169, 248, 634
HinP1I	GCGC	3 cut(s)	169, 248, 634
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	2 cut(s)	185, 261
Hpy166II	GTNNAC	3 cut(s)	490, 508, 652
Hpy188I	TCNGA	4 cut(s)	153, 357, 556, 595
Hpy188III	TCNNGA	4 cut(s)	102, 185, 206, 283
Hpy8I	GTNNAC	3 cut(s)	490, 508, 652
HpyAV	CCTTC	2 cut(s)	561, 615
HpyCH4V	TGCA	6 cut(s)	32, 129, 307, 394, 543, 790
HpyF10VI	GCNNNNNNNGC	1 cut(s)	388
HpyF3I	CTNAG	1 cut(s)	474
Hsp92II	CATG	5 cut(s)	496, 673, 762, 769, 778
HspAI	GCGC	3 cut(s)	169, 248, 634
Kpn2I	TCCGGA	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	640
Kzo9I	GATC	2 cut(s)	570, 640
LmnI	GCTCC	2 cut(s)	482, 623
LpnPI	CCDG	8 cut(s)	87, 102, 171, 198, 274, 277, 724, 735
Lsp1109I	GCAGC	4 cut(s)	378, 409, 685, 688
LweI	GCATC	2 cut(s)	331, 369
MaeI	CTAG	4 cut(s)	14, 300, 384, 609
MaeIII	GTNAC	1 cut(s)	558
MalI	GATC	2 cut(s)	572, 642
MboI	GATC	2 cut(s)	570, 640
MboII	GAAGA	6 cut(s)	56, 133, 200, 276, 409, 670
MflI	RGATCY	1 cut(s)	570
MluCI	AATT	7 cut(s)	243, 416, 467, 587, 691, 747, 782
MnlI	CCTC	2 cut(s)	78, 221
Mph1103I	ATGCAT	2 cut(s)	34, 545
MroI	TCCGGA	1 cut(s)	184
MseI	TTAA	3 cut(s)	107, 165, 327
MslI	CAYNNNNRTG	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	196
MspCI	CTTAAG	1 cut(s)	326
MspI	CCGG	2 cut(s)	185, 261
MspR9I	CCNGG	1 cut(s)	261
Mva1269I	GAATGC	2 cut(s)	436, 545
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	388
NciI	CCSGG	1 cut(s)	261
NdeII	GATC	2 cut(s)	570, 640
NlaIII	CATG	5 cut(s)	496, 673, 762, 769, 778
NlaIV	GGNNCC	1 cut(s)	625
NsbI	TGCGCA	2 cut(s)	249, 635
NsiI	ATGCAT	2 cut(s)	34, 545
NspI	RCATGY	1 cut(s)	769
PctI	GAATGC	2 cut(s)	436, 545
PfeI	GAWTC	1 cut(s)	202
PflMI	CCANNNNNTGG	1 cut(s)	670
PkrI	GCNGC	4 cut(s)	393, 424, 700, 703
PspN4I	GGNNCC	1 cut(s)	625
PstI	CTGCAG	1 cut(s)	396
PsuI	RGATCY	1 cut(s)	570
PvuII	CAGCTG	1 cut(s)	196
RsaI	GTAC	2 cut(s)	21, 61
RsaNI	GTAC	2 cut(s)	20, 60
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	3 cut(s)	107, 165, 327
SatI	GCNGC	4 cut(s)	392, 423, 699, 702
Sau3AI	GATC	2 cut(s)	570, 640
ScaI	AGTACT	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	261
SetI	ASST	8 cut(s)	46, 198, 213, 236, 371, 424, 487, 797
SfaNI	GCATC	2 cut(s)	331, 369
SfcI	CTRYAG	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	7 cut(s)	243, 416, 467, 587, 691, 747, 782
SsiI	CCGC	1 cut(s)	171
SspI	AATATT	2 cut(s)	361, 599
SspMI	CTAG	4 cut(s)	14, 300, 384, 609
StyD4I	CCNGG	1 cut(s)	259
TaqI	TCGA	2 cut(s)	239, 522
TasI	AATT	7 cut(s)	243, 416, 467, 587, 691, 747, 782
TatI	WGTACW	2 cut(s)	19, 59
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	3 cut(s)	107, 165, 327
Tru9I	TTAA	3 cut(s)	107, 165, 327
TseI	GCWGC	4 cut(s)	391, 422, 698, 701
TspDTI	ATGAA	5 cut(s)	28, 75, 291, 747, 795
Van91I	CCANNNNNTGG	1 cut(s)	670
Vha464I	CTTAAG	1 cut(s)	326
XapI	RAATTY	1 cut(s)	691
XceI	RCATGY	1 cut(s)	769
XmiI	GTMKAC	1 cut(s)	507
XspI	CTAG	4 cut(s)	14, 300, 384, 609
ZrmI	AGTACT	1 cut(s)	61
Zsp2I	ATGCAT	2 cut(s)	34, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.