Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Forward (+)

5593866 .. 5594430

Gene Structure 565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0037300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGTCTGATCAATGCGAAGGTAAGGATTCATGGCCTGAACTGTTGGGAGCTGAGGGAACAGTTGCAAAGGCAACAATTGAGAGCGAAAACTCTTTAGTCGAGGCAGTGATCGTGCTAGAAGGAACACCTGTCACTACAGATTTCCGGTGTGATAGGGTTCGTGTTTGGGTCGATACAGATGGCATTGTTACCAGGGTCCCTGTCATTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7e

Protein Analysis

70

Amino Acids

7.56

Weight (kDa)

4.22

Isoelectric Point (pI)

24.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
potato_inhibit	PF00280	8 - 70	1.3e-26	Potato inhibitor I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	206
AjnI	CCWGG	1 cut(s)	191
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
AoxI	GGCC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	196
BbvCI	CCTCAGC	1 cut(s)	51
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	193
BclI	TGATCA	1 cut(s)	7
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	135
Bme1390I	CCNGG	1 cut(s)	193
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	2 cut(s)	197, 198
BmrFI	CCNGG	1 cut(s)	193
Bpu10I	CCTNAGC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	192
BsaWI	WCCGGW	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMII	CTCAG	1 cut(s)	42
BshFI	GGCC	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	145
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	7, 108
BspANI	GGCC	1 cut(s)	34
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	2 cut(s)	197, 198
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	2 cut(s)	7, 108
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	2 cut(s)	42, 61
BstDEI	CTNAG	1 cut(s)	51
BstKTI	GATC	2 cut(s)	10, 111
BstMBI	GATC	2 cut(s)	7, 108
BstNI	CCWGG	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	191
BstSFI	CTRYAG	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	34
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	196
CviAII	CATG	1 cut(s)	30
CviJI	RGCY	2 cut(s)	34, 50
CviKI_1	RGCY	2 cut(s)	34, 50
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	2 cut(s)	9, 110
DpnII	GATC	2 cut(s)	7, 108
Eco47I	GGWCC	1 cut(s)	196
EcoO109I	RGGNCCY	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	191
FaeI	CATG	1 cut(s)	33
FaiI	YATR	1 cut(s)	31
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	1 cut(s)	29
FbaI	TGATCA	1 cut(s)	7
FspBI	CTAG	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	34
HapII	CCGG	1 cut(s)	145
Hin1II	CATG	1 cut(s)	33
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	7
HpyAV	CCTTC	2 cut(s)	11, 113
HpyCH4III	ACNGT	2 cut(s)	42, 61
HpyCH4V	TGCA	1 cut(s)	65
HpyF3I	CTNAG	1 cut(s)	51
Hsp92II	CATG	1 cut(s)	33
KflI	GGGWCCC	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	7, 108
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	5 cut(s)	48, 141, 158, 178, 205
MaeI	CTAG	1 cut(s)	116
MaeIII	GTNAC	2 cut(s)	130, 187
MalI	GATC	2 cut(s)	9, 110
MboI	GATC	2 cut(s)	7, 108
MfeI	CAATTG	1 cut(s)	75
MluCI	AATT	1 cut(s)	75
MnlI	CCTC	2 cut(s)	46, 94
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	1 cut(s)	193
MunI	CAATTG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	193
NdeII	GATC	2 cut(s)	7, 108
NlaIII	CATG	1 cut(s)	33
NlaIV	GGNNCC	2 cut(s)	197, 198
NmuCI	GTSAC	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	26
PpuMI	RGGWCCY	1 cut(s)	196
Psp5II	RGGWCCY	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	191
PspN4I	GGNNCC	2 cut(s)	197, 198
PspPI	GGNCC	1 cut(s)	196
PspPPI	RGGWCCY	1 cut(s)	196
Sau3AI	GATC	2 cut(s)	7, 108
Sau96I	GGNCC	1 cut(s)	196
ScrFI	CCNGG	1 cut(s)	193
SetI	ASST	3 cut(s)	22, 52, 130
SfcI	CTRYAG	1 cut(s)	135
SinI	GGWCC	1 cut(s)	196
Sse9I	AATT	1 cut(s)	75
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	191
TaaI	ACNGT	2 cut(s)	42, 61
TaqI	TCGA	2 cut(s)	99, 171
TasI	AATT	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	26
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	18
TspRI	CASTG	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	196
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.