Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Forward (+)

34960373 .. 34962515

Gene Structure 2143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1217300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTTGGGCTTTCAGCCCAATATTTTACTATACAGTACTCCAGGGCTATTCATAACCGTTCATTTATACGATTCATCATCCAACCGTCCAGCTGTAGGGTTTTCTGTCACTCAAAAGCAAAAGTCGCTCCGGCTCTCGATTCTCCTTGAGTCAGTTTTTGCCAAGATGTATACTTCAAGGAAGAAGATTTCCAAGGATAACAATGCCGAGCCGACTGAATTTGAAGAGTCAGTTGCTCAAGCAGTGTTTGATTTGGAAAACACAAATCAGGAGCTGAAGAGTGACCTGAAGGATCTCTATATTAATTCAGCAATTCAAGTTGATGTGTCTGGAAGCAAGAAGGCAGTTGTTATCCATGTGCCCTATAGGCTTAGGAAGGCGTACCGCAAGATTCACGTTCGCCTCGTGAGGGAGCTCGAGAAGAAGTTCAGTGGAAAGGATGTGATCCTGATTGCCACACGTAGGATTGTGAGGCCTCCAAAGAAAGGGTCAGCTGCTCAACGCCCCCGCACTCGTACACTAACTGCTGTGCACGAGGCAATGTTGGAGGATGTTGTGTTGCCTGCTGAGATTACTGGAAAGCGCATAAGATACCGTCTTGATGGATCCAAGATAATGAAGGTGTTCTTGGACCCCAAGGAACGTAACAACACTGAATACAAGCTGGAGAGCTTCTCTGCTGTTTACCGAAAGCTTTCGGGAAAGGATGTCGTGTTCGAGTACCCAATCACCGAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7e

Protein Analysis

247

Amino Acids

28.08

Weight (kDa)

9.84

Isoelectric Point (pI)

33.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7e	PF01251	62 - 241	4.2e-78	Ribosomal protein S7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	170
AciI	CCGC	2 cut(s)	385, 508
AclWI	GGATC	4 cut(s)	300, 439, 600, 613
AcsI	RAATTY	1 cut(s)	218
AcuI	CTGAAG	2 cut(s)	296, 308
AfaI	GTAC	4 cut(s)	37, 383, 517, 722
AfiI	CCNNNNNNNGG	4 cut(s)	95, 409, 462, 485
AflIII	ACRYGT	1 cut(s)	458
AgsI	TTSAA	3 cut(s)	177, 224, 317
AjnI	CCWGG	1 cut(s)	40
AjuI	GAANNNNNNNTTGG	2 cut(s)	611, 643
AloI	GAACNNNNNNTCC	2 cut(s)	698, 730
AluBI	AGCT	7 cut(s)	92, 274, 415, 494, 664, 672, 694
AluI	AGCT	7 cut(s)	92, 274, 415, 494, 664, 672, 694
Alw21I	GWGCWC	2 cut(s)	417, 534
Alw44I	GTGCAC	1 cut(s)	530
AlwI	GGATC	4 cut(s)	300, 439, 600, 613
AlwNI	CAGNNNCTG	1 cut(s)	274
Ama87I	CYCGRG	1 cut(s)	416
AoxI	GGCC	1 cut(s)	473
ApaLI	GTGCAC	1 cut(s)	530
ApeKI	GCWGC	1 cut(s)	494
ApoI	RAATTY	1 cut(s)	218
ArsI	GACNNNNNNTTYG	2 cut(s)	473, 505
AseI	ATTAAT	1 cut(s)	303
Asp700I	GAANNNNTTC	3 cut(s)	425, 623, 694
AspLEI	GCGC	1 cut(s)	585
AspS9I	GGNCC	1 cut(s)	631
AsuHPI	GGTGA	1 cut(s)	721
AvaI	CYCGRG	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	631
BaeGI	GKGCMC	2 cut(s)	363, 534
BamHI	GGATCC	1 cut(s)	605
BanII	GRGCYC	1 cut(s)	417
BauI	CACGAG	2 cut(s)	404, 533
Bbv12I	GWGCWC	2 cut(s)	417, 534
BbvI	GCAGC	1 cut(s)	481
BccI	CCATC	1 cut(s)	596
BciT130I	CCWGG	1 cut(s)	42
BfmI	CTRYAG	2 cut(s)	93, 364
BglI	GCCNNNNNGGC	1 cut(s)	367
BisI	GCNGC	1 cut(s)	495
BlsI	GCNGC	1 cut(s)	496
BmcAI	AGTACT	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	42
Bme18I	GGWCC	1 cut(s)	631
BmeT110I	CYCGRG	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	631
BmiI	GGNNCC	2 cut(s)	607, 633
BmrFI	CCNGG	1 cut(s)	42
BplI	GAGNNNNNCTC	2 cut(s)	659, 691
BpmI	CTGGAG	2 cut(s)	24, 686
Bpu10I	CCTNAGC	1 cut(s)	371
BpuEI	CTTGAG	2 cut(s)	167, 222
BsaAI	YACGTR	1 cut(s)	461
BsaJI	CCNNGG	3 cut(s)	41, 192, 636
Bsc4I	CCNNNNNNNGG	4 cut(s)	95, 409, 462, 485
Bse1I	ACTGG	1 cut(s)	580
Bse3DI	GCAATG	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	3 cut(s)	41, 192, 636
BseGI	GGATG	4 cut(s)	77, 445, 556, 712
BseLI	CCNNNNNNNGG	4 cut(s)	95, 409, 462, 485
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	1 cut(s)	580
BseSI	GKGCMC	2 cut(s)	363, 534
BseXI	GCAGC	1 cut(s)	481
BshFI	GGCC	1 cut(s)	475
BsiHKAI	GWGCWC	2 cut(s)	417, 534
BsiHKCI	CYCGRG	1 cut(s)	416
BsiSI	CCGG	1 cut(s)	130
BslI	CCNNNNNNNGG	4 cut(s)	95, 409, 462, 485
BsnI	GGCC	1 cut(s)	475
BsoBI	CYCGRG	1 cut(s)	416
Bsp1286I	GDGCHC	3 cut(s)	363, 417, 534
Bsp143I	GATC	3 cut(s)	292, 444, 605
BspACI	CCGC	2 cut(s)	385, 508
BspANI	GGCC	1 cut(s)	475
BspCNI	CTCAG	1 cut(s)	559
BspLI	GGNNCC	2 cut(s)	607, 633
BspPI	GGATC	4 cut(s)	300, 439, 600, 613
BsrDI	GCAATG	1 cut(s)	546
BsrI	ACTGG	1 cut(s)	580
BssECI	CCNNGG	3 cut(s)	41, 192, 636
BssMI	GATC	3 cut(s)	292, 444, 605
BssNAI	GTATAC	1 cut(s)	171
BssSI	CACGAG	2 cut(s)	404, 533
BssT1I	CCWWGG	2 cut(s)	192, 636
Bst1107I	GTATAC	1 cut(s)	171
Bst2BI	CACGAG	2 cut(s)	404, 533
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	4 cut(s)	35, 58, 86, 596
Bst6I	CTCTTC	2 cut(s)	219, 272
BstBAI	YACGTR	1 cut(s)	461
BstC8I	GCNNGC	1 cut(s)	564
BstDEI	CTNAG	2 cut(s)	371, 567
BstF5I	GGATG	4 cut(s)	77, 445, 556, 712
BstHHI	GCGC	1 cut(s)	585
BstKTI	GATC	3 cut(s)	295, 447, 608
BstMBI	GATC	3 cut(s)	292, 444, 605
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 367
BstNI	CCWGG	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	40
BstSFI	CTRYAG	2 cut(s)	93, 364
BstSLI	GKGCMC	2 cut(s)	363, 534
BstV1I	GCAGC	1 cut(s)	481
BstX2I	RGATCY	2 cut(s)	292, 605
BstYI	RGATCY	2 cut(s)	292, 605
BstZ17I	GTATAC	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	475
BtsCI	GGATG	4 cut(s)	77, 445, 556, 712
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	3 cut(s)	249, 436, 651
Cac8I	GCNNGC	1 cut(s)	564
CaiI	CAGNNNCTG	1 cut(s)	274
CfoI	GCGC	1 cut(s)	585
Cfr13I	GGNCC	1 cut(s)	631
Csp6I	GTAC	4 cut(s)	36, 382, 516, 721
CviAII	CATG	1 cut(s)	356
CviQI	GTAC	4 cut(s)	36, 382, 516, 721
DdeI	CTNAG	2 cut(s)	371, 567
DpnI	GATC	3 cut(s)	294, 446, 607
DpnII	GATC	3 cut(s)	292, 444, 605
Eam1104I	CTCTTC	2 cut(s)	219, 272
EarI	CTCTTC	2 cut(s)	219, 272
Ecl136II	GAGCTC	1 cut(s)	415
Eco130I	CCWWGG	2 cut(s)	192, 636
Eco147I	AGGCCT	1 cut(s)	475
Eco24I	GRGCYC	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	631
Eco53kI	GAGCTC	1 cut(s)	415
Eco57I	CTGAAG	2 cut(s)	296, 308
Eco88I	CYCGRG	1 cut(s)	416
EcoICRI	GAGCTC	1 cut(s)	415
EcoRII	CCWGG	1 cut(s)	40
EcoT14I	CCWWGG	2 cut(s)	192, 636
EcoT38I	GRGCYC	1 cut(s)	417
ErhI	CCWWGG	2 cut(s)	192, 636
FaeI	CATG	1 cut(s)	359
FaiI	YATR	9 cut(s)	31, 53, 67, 171, 300, 357, 366, 587, 739
FalI	AAGNNNNNCTT	2 cut(s)	611, 643
FatI	CATG	1 cut(s)	355
FauI	CCCGC	1 cut(s)	515
FblI	GTMKAC	1 cut(s)	170
Fnu4HI	GCNGC	1 cut(s)	495
FokI	GGATG	4 cut(s)	64, 452, 563, 719
FriOI	GRGCYC	1 cut(s)	417
Fsp4HI	GCNGC	1 cut(s)	495
GlaI	GCGC	1 cut(s)	584
GluI	GCNGC	1 cut(s)	495
GsuI	CTGGAG	2 cut(s)	24, 686
HaeIII	GGCC	1 cut(s)	475
HapII	CCGG	1 cut(s)	130
HhaI	GCGC	1 cut(s)	585
Hin1II	CATG	1 cut(s)	359
Hin6I	GCGC	1 cut(s)	583
HinP1I	GCGC	1 cut(s)	583
HindIII	AAGCTT	1 cut(s)	692
HinfI	GANTC	5 cut(s)	71, 139, 149, 227, 391
HpaII	CCGG	1 cut(s)	130
HphI	GGTGA	1 cut(s)	721
Hpy166II	GTNNAC	4 cut(s)	171, 518, 532, 685
Hpy188III	TCNNGA	8 cut(s)	136, 269, 330, 406, 418, 448, 599, 699
Hpy8I	GTNNAC	4 cut(s)	171, 518, 532, 685
HpyAV	CCTTC	4 cut(s)	283, 334, 370, 613
HpyCH4III	ACNGT	4 cut(s)	35, 58, 86, 596
HpyCH4IV	ACGT	3 cut(s)	396, 460, 643
HpyCH4V	TGCA	1 cut(s)	532
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 367
HpyF3I	CTNAG	2 cut(s)	371, 567
HpySE526I	ACGT	3 cut(s)	396, 460, 643
Hsp92II	CATG	1 cut(s)	359
HspAI	GCGC	1 cut(s)	583
Kzo9I	GATC	3 cut(s)	292, 444, 605
LmnI	GCTCC	3 cut(s)	132, 271, 412
Lsp1109I	GCAGC	1 cut(s)	481
MaeII	ACGT	3 cut(s)	396, 460, 643
MaeIII	GTNAC	3 cut(s)	106, 281, 644
MalI	GATC	3 cut(s)	294, 446, 607
MboI	GATC	3 cut(s)	292, 444, 605
MboII	GAAGA	5 cut(s)	193, 196, 236, 289, 433
MflI	RGATCY	2 cut(s)	292, 605
MhlI	GDGCHC	3 cut(s)	363, 417, 534
MluCI	AATT	3 cut(s)	218, 304, 312
MlyI	GAGTC	2 cut(s)	158, 236
MmeI	TCCRAC	2 cut(s)	105, 525
MnlI	CCTC	6 cut(s)	402, 413, 465, 486, 529, 541
MroXI	GAANNNNTTC	3 cut(s)	425, 623, 694
MseI	TTAA	1 cut(s)	303
MspA1I	CMGCKG	2 cut(s)	92, 494
MspI	CCGG	1 cut(s)	130
MspR9I	CCNGG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	2 cut(s)	124, 367
NdeII	GATC	3 cut(s)	292, 444, 605
NlaIII	CATG	1 cut(s)	359
NlaIV	GGNNCC	2 cut(s)	607, 633
NmeAIII	GCCGAG	1 cut(s)	232
NmuCI	GTSAC	2 cut(s)	106, 281
PaeR7I	CTCGAG	1 cut(s)	416
PceI	AGGCCT	1 cut(s)	475
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PdmI	GAANNNNTTC	3 cut(s)	425, 623, 694
PfeI	GAWTC	3 cut(s)	71, 139, 391
PkrI	GCNGC	1 cut(s)	496
PleI	GAGTC	2 cut(s)	157, 235
PpsI	GAGTC	2 cut(s)	157, 235
Ppu21I	YACGTR	1 cut(s)	461
PshBI	ATTAAT	1 cut(s)	303
Psp124BI	GAGCTC	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	2 cut(s)	607, 633
PspPI	GGNCC	1 cut(s)	631
PstNI	CAGNNNCTG	1 cut(s)	274
PsuI	RGATCY	2 cut(s)	292, 605
PvuII	CAGCTG	2 cut(s)	92, 494
RsaI	GTAC	4 cut(s)	37, 383, 517, 722
RsaNI	GTAC	4 cut(s)	36, 382, 516, 721
SacI	GAGCTC	1 cut(s)	417
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	1 cut(s)	495
Sau3AI	GATC	3 cut(s)	292, 444, 605
Sau96I	GGNCC	1 cut(s)	631
ScaI	AGTACT	1 cut(s)	37
SchI	GAGTC	2 cut(s)	158, 236
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	3 cut(s)	363, 417, 534
SfcI	CTRYAG	2 cut(s)	93, 364
Sfr274I	CTCGAG	1 cut(s)	416
SinI	GGWCC	1 cut(s)	631
SlaI	CTCGAG	1 cut(s)	416
SmlI	CTYRAG	3 cut(s)	146, 237, 416
SmoI	CTYRAG	3 cut(s)	146, 237, 416
Sse9I	AATT	3 cut(s)	218, 304, 312
SseBI	AGGCCT	1 cut(s)	475
SsiI	CCGC	2 cut(s)	385, 508
SspI	AATATT	1 cut(s)	22
SstI	GAGCTC	1 cut(s)	417
StuI	AGGCCT	1 cut(s)	475
StyD4I	CCNGG	1 cut(s)	40
StyI	CCWWGG	2 cut(s)	192, 636
TaaI	ACNGT	4 cut(s)	35, 58, 86, 596
TaiI	ACGT	3 cut(s)	399, 463, 646
TaqI	TCGA	3 cut(s)	137, 417, 717
TasI	AATT	3 cut(s)	218, 304, 312
TatI	WGTACW	1 cut(s)	35
TfiI	GAWTC	3 cut(s)	71, 139, 391
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	3 cut(s)	249, 436, 658
TseFI	GTSAC	2 cut(s)	106, 281
TseI	GCWGC	1 cut(s)	494
Tsp45I	GTSAC	2 cut(s)	106, 281
TspDTI	ATGAA	4 cut(s)	40, 50, 63, 632
TspRI	CASTG	3 cut(s)	249, 436, 658
VneI	GTGCAC	1 cut(s)	530
VpaK11BI	GGWCC	1 cut(s)	631
VspI	ATTAAT	1 cut(s)	303
XapI	RAATTY	1 cut(s)	218
XhoI	CTCGAG	1 cut(s)	416
XmiI	GTMKAC	1 cut(s)	170
XmnI	GAANNNNTTC	3 cut(s)	425, 623, 694
ZrmI	AGTACT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.