Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Forward (+)

30874632 .. 30876350

Gene Structure 1719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1227600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAATTTGAAAGGGTTTGAAGATTCAGATTTAGCCAAGATGTATACTTCAAGGAAGAAGATTTCCAAGGATAACAATGCTGAGCCGACTGAATTCGAAGAGTCGGTTGCTCAAGCAGTATTTGATTTGGAAAACACAAATCAGGAGCTGAAGAGTGACCTGAAGGATCTCTATATCAACTCAGCAATTCAAGTTGATGTGTCTGGAAGCAAGAAGGCCGTGGTTATCCATGTGCCCTATAGGCTTAGGAAGGCTTATCGCAAGATCCATGTTCGCCTCGTGAGGGAGCTTGAGAAGAAGTTCAGCGGGAAGGATGTGATCCTGATTGCCACACGTAGGATTGTGAGGCCTCCTAAGAAAGGGTCAGCTGCTCAATGTCCCCGCACTCGTACACTAACTGCTGTGCATGAAGCAATGTTGGAAGATGTTGTGTTGCCTGCTGAGATTATTGGAAAGCGCATCAGATACCGTCTGGATGGATCCAAGATAATGAAGGTGTTCTTGGACCCCAAGGAACGAAACAACACCGAGTACAAGCTGGAGAGCTTCTCTGCTGTTTACCGGAAGCTTTCAGGAAAGGATGTTGTGTTCGAGTACCCAATCACCGAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7e

Protein Analysis

205

Amino Acids

23.39

Weight (kDa)

9.55

Isoelectric Point (pI)

26.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7e	PF01251	20 - 199	5.3e-78	Ribosomal protein S7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	44
AciI	CCGC	2 cut(s)	306, 382
AclWI	GGATC	5 cut(s)	174, 259, 313, 474, 487
AcsI	RAATTY	2 cut(s)	4, 92
AcuI	CTGAAG	2 cut(s)	170, 182
AfaI	GTAC	3 cut(s)	391, 533, 596
AfiI	CCNNNNNNNGG	3 cut(s)	283, 336, 359
AflIII	ACRYGT	1 cut(s)	332
AgsI	TTSAA	4 cut(s)	10, 20, 51, 191
AjuI	GAANNNNNNNTTGG	2 cut(s)	485, 517
AloI	GAACNNNNNNTCC	2 cut(s)	572, 604
AluBI	AGCT	6 cut(s)	148, 289, 368, 538, 546, 568
AluI	AGCT	6 cut(s)	148, 289, 368, 538, 546, 568
AlwI	GGATC	5 cut(s)	174, 259, 313, 474, 487
AlwNI	CAGNNNCTG	1 cut(s)	148
AoxI	GGCC	2 cut(s)	216, 347
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	2 cut(s)	4, 92
Asp700I	GAANNNNTTC	2 cut(s)	299, 497
AspLEI	GCGC	1 cut(s)	459
AspS9I	GGNCC	1 cut(s)	505
AsuHPI	GGTGA	1 cut(s)	595
AsuII	TTCGAA	1 cut(s)	96
AvaII	GGWCC	1 cut(s)	505
BaeGI	GKGCMC	1 cut(s)	237
BamHI	GGATCC	1 cut(s)	479
BauI	CACGAG	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	1 cut(s)	470
BceAI	ACGGC	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	238
BglI	GCCNNNNNGGC	1 cut(s)	241
BisI	GCNGC	1 cut(s)	369
BlpI	GCTNAGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	370
Bme18I	GGWCC	1 cut(s)	505
BmgT120I	GGNCC	1 cut(s)	505
BmiI	GGNNCC	2 cut(s)	481, 507
BmsI	GCATC	1 cut(s)	468
BplI	GAGNNNNNCTC	2 cut(s)	533, 565
BpmI	CTGGAG	1 cut(s)	560
Bpu10I	CCTNAGC	1 cut(s)	245
Bpu1102I	GCTNAGC	1 cut(s)	81
Bpu14I	TTCGAA	1 cut(s)	96
BpuEI	CTTGAG	2 cut(s)	96, 311
BsaAI	YACGTR	1 cut(s)	335
BsaJI	CCNNGG	3 cut(s)	66, 219, 510
BsaWI	WCCGGW	1 cut(s)	561
Bsc4I	CCNNNNNNNGG	3 cut(s)	283, 336, 359
Bse3DI	GCAATG	1 cut(s)	420
BseDI	CCNNGG	3 cut(s)	66, 219, 510
BseGI	GGATG	3 cut(s)	319, 481, 586
BseLI	CCNNNNNNNGG	3 cut(s)	283, 336, 359
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	3 cut(s)	72, 195, 432
BseSI	GKGCMC	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	355
BshFI	GGCC	2 cut(s)	218, 349
BsiSI	CCGG	1 cut(s)	562
BslFI	GGGAC	1 cut(s)	363
BslI	CCNNNNNNNGG	3 cut(s)	283, 336, 359
BsmFI	GGGAC	1 cut(s)	363
BsnI	GGCC	2 cut(s)	218, 349
Bsp119I	TTCGAA	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	4 cut(s)	166, 264, 318, 479
Bsp1720I	GCTNAGC	1 cut(s)	81
BspACI	CCGC	2 cut(s)	306, 382
BspANI	GGCC	2 cut(s)	218, 349
BspCNI	CTCAG	3 cut(s)	73, 194, 433
BspLI	GGNNCC	2 cut(s)	481, 507
BspPI	GGATC	5 cut(s)	174, 259, 313, 474, 487
BspT104I	TTCGAA	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	420
BssECI	CCNNGG	3 cut(s)	66, 219, 510
BssMI	GATC	4 cut(s)	166, 264, 318, 479
BssNAI	GTATAC	1 cut(s)	45
BssSI	CACGAG	1 cut(s)	278
BssT1I	CCWWGG	2 cut(s)	66, 510
Bst1107I	GTATAC	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	470
Bst6I	CTCTTC	2 cut(s)	93, 146
BstBAI	YACGTR	1 cut(s)	335
BstBI	TTCGAA	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	5 cut(s)	81, 181, 245, 354, 441
BstDSI	CCRYGG	1 cut(s)	219
BstENI	CCTNNNNNAGG	1 cut(s)	357
BstF5I	GGATG	3 cut(s)	319, 481, 586
BstHHI	GCGC	1 cut(s)	459
BstKTI	GATC	4 cut(s)	169, 267, 321, 482
BstMBI	GATC	4 cut(s)	166, 264, 318, 479
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstSFI	CTRYAG	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	355
BstX2I	RGATCY	3 cut(s)	166, 264, 479
BstYI	RGATCY	3 cut(s)	166, 264, 479
BstZ17I	GTATAC	1 cut(s)	45
BsuRI	GGCC	2 cut(s)	218, 349
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	3 cut(s)	319, 481, 586
Cac8I	GCNNGC	1 cut(s)	438
CaiI	CAGNNNCTG	1 cut(s)	148
CfoI	GCGC	1 cut(s)	459
Cfr13I	GGNCC	1 cut(s)	505
Csp6I	GTAC	3 cut(s)	390, 532, 595
CviAII	CATG	3 cut(s)	230, 269, 407
CviQI	GTAC	3 cut(s)	390, 532, 595
DdeI	CTNAG	5 cut(s)	81, 181, 245, 354, 441
DpnI	GATC	4 cut(s)	168, 266, 320, 481
DpnII	GATC	4 cut(s)	166, 264, 318, 479
Eam1104I	CTCTTC	2 cut(s)	93, 146
EarI	CTCTTC	2 cut(s)	93, 146
Eco130I	CCWWGG	2 cut(s)	66, 510
Eco147I	AGGCCT	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	505
Eco57I	CTGAAG	2 cut(s)	170, 182
EcoNI	CCTNNNNNAGG	1 cut(s)	357
EcoRI	GAATTC	1 cut(s)	92
EcoT14I	CCWWGG	2 cut(s)	66, 510
ErhI	CCWWGG	2 cut(s)	66, 510
FaeI	CATG	3 cut(s)	233, 272, 410
FaiI	YATR	7 cut(s)	45, 174, 231, 240, 270, 408, 613
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	3 cut(s)	229, 268, 406
FauI	CCCGC	2 cut(s)	299, 389
FblI	GTMKAC	1 cut(s)	44
Fnu4HI	GCNGC	1 cut(s)	369
FokI	GGATG	3 cut(s)	326, 488, 593
Fsp4HI	GCNGC	1 cut(s)	369
GlaI	GCGC	1 cut(s)	458
GluI	GCNGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	560
HaeIII	GGCC	2 cut(s)	218, 349
HapII	CCGG	1 cut(s)	562
HhaI	GCGC	1 cut(s)	459
Hin1II	CATG	3 cut(s)	233, 272, 410
Hin6I	GCGC	1 cut(s)	457
HinP1I	GCGC	1 cut(s)	457
HindIII	AAGCTT	1 cut(s)	566
HinfI	GANTC	2 cut(s)	23, 101
HpaII	CCGG	1 cut(s)	562
HphI	GGTGA	1 cut(s)	595
Hpy166II	GTNNAC	3 cut(s)	45, 392, 559
Hpy188I	TCNGA	2 cut(s)	28, 464
Hpy188III	TCNNGA	6 cut(s)	143, 204, 280, 322, 473, 573
Hpy8I	GTNNAC	3 cut(s)	45, 392, 559
HpyAV	CCTTC	5 cut(s)	157, 208, 244, 304, 487
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4IV	ACGT	1 cut(s)	334
HpyCH4V	TGCA	1 cut(s)	406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	5 cut(s)	81, 181, 245, 354, 441
HpySE526I	ACGT	1 cut(s)	334
Hsp92II	CATG	3 cut(s)	233, 272, 410
HspAI	GCGC	1 cut(s)	457
Kzo9I	GATC	4 cut(s)	166, 264, 318, 479
LmnI	GCTCC	2 cut(s)	145, 286
LpnPI	CCDG	9 cut(s)	128, 173, 189, 335, 450, 458, 524, 558, 575
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	1 cut(s)	468
MaeII	ACGT	1 cut(s)	334
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	4 cut(s)	168, 266, 320, 481
MboI	GATC	4 cut(s)	166, 264, 318, 479
MboII	GAAGA	7 cut(s)	32, 67, 70, 110, 163, 307, 434
MflI	RGATCY	3 cut(s)	166, 264, 479
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	3 cut(s)	4, 92, 186
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	4 cut(s)	276, 287, 339, 360
MroXI	GAANNNNTTC	2 cut(s)	299, 497
MspA1I	CMGCKG	2 cut(s)	306, 368
MspI	CCGG	1 cut(s)	562
MwoI	GCNNNNNNNGC	1 cut(s)	241
NdeII	GATC	4 cut(s)	166, 264, 318, 479
NlaIII	CATG	3 cut(s)	233, 272, 410
NlaIV	GGNNCC	2 cut(s)	481, 507
NmuCI	GTSAC	1 cut(s)	155
NspV	TTCGAA	1 cut(s)	96
PceI	AGGCCT	1 cut(s)	349
PdmI	GAANNNNTTC	2 cut(s)	299, 497
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	370
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Ppu21I	YACGTR	1 cut(s)	335
PspN4I	GGNNCC	2 cut(s)	481, 507
PspPI	GGNCC	1 cut(s)	505
PstNI	CAGNNNCTG	1 cut(s)	148
PsuI	RGATCY	3 cut(s)	166, 264, 479
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	3 cut(s)	391, 533, 596
RsaNI	GTAC	3 cut(s)	390, 532, 595
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	4 cut(s)	166, 264, 318, 479
Sau96I	GGNCC	1 cut(s)	505
SchI	GAGTC	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	9 cut(s)	150, 162, 291, 337, 370, 498, 540, 548, 570
SfaNI	GCATC	1 cut(s)	468
SfcI	CTRYAG	1 cut(s)	238
SfuI	TTCGAA	1 cut(s)	96
SinI	GGWCC	1 cut(s)	505
SmlI	CTYRAG	2 cut(s)	111, 290
SmoI	CTYRAG	2 cut(s)	111, 290
Sse9I	AATT	3 cut(s)	4, 92, 186
SseBI	AGGCCT	1 cut(s)	349
SsiI	CCGC	2 cut(s)	306, 382
StuI	AGGCCT	1 cut(s)	349
StyI	CCWWGG	2 cut(s)	66, 510
TaaI	ACNGT	1 cut(s)	470
TaiI	ACGT	1 cut(s)	337
TaqI	TCGA	2 cut(s)	96, 591
TasI	AATT	3 cut(s)	4, 92, 186
TatI	WGTACW	1 cut(s)	531
TfiI	GAWTC	1 cut(s)	23
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	1 cut(s)	368
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	3 cut(s)	17, 423, 506
VpaK11BI	GGWCC	1 cut(s)	505
XagI	CCTNNNNNAGG	1 cut(s)	357
XapI	RAATTY	2 cut(s)	4, 92
XmiI	GTMKAC	1 cut(s)	44
XmnI	GAANNNNTTC	2 cut(s)	299, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.