Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Forward (+)

17579802 .. 17580376

Gene Structure 575 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1071000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGAATACAGAAAATCGGTTGCTCAAGCAGTATTTGATTTGGAAAACACAAATCAGGAGCTGAAGAGTGACCTGAAGGATCTCTATATCAACTCAGCAATTCAAGTTGATGCGTATGGAAGCAAGAAGGCCGCGGTTATCCATGTGCCCTATAGGCTTAGGAAGGCTTATCGCAAGATCCTTGTTCGCCTCGTGAGGGAGCTTGAGAAGAAGTTCAGTGGGAAGGATGTGATCCTGATTGCCACACGTAGGATTGTGAGGCCTCCTAAGAAAGGGTCAGCTGCTCAACGTCCCCGCAGTCGTACACTAACTGCTGTGCATGAAGCAATGTTGGAAGATGTTGTGTTGCCTGCTGAGATTATTGGAAAGCGCATCAGATACTGTCTGGATGGATCCAAGACAATGAAGGTATTCTTGGACCCCAAGGAACGAAACAACACCGAGTACAAGCTGGAGAGCTTCCCTGCTGTTTACCGGAAGCTTTCAGGAAAGGATGTTGTGTTCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7e

Protein Analysis

170

Amino Acids

19.46

Weight (kDa)

9.9

Isoelectric Point (pI)

25.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7e	PF01251	3 - 169	1.4e-71	Ribosomal protein S7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	134
AciI	CCGC	3 cut(s)	132, 134, 295
AclWI	GGATC	5 cut(s)	87, 172, 226, 387, 400
AcuI	CTGAAG	2 cut(s)	83, 95
AfaI	GTAC	2 cut(s)	304, 446
AfiI	CCNNNNNNNGG	3 cut(s)	196, 249, 272
AflIII	ACRYGT	1 cut(s)	245
AgsI	TTSAA	1 cut(s)	104
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AloI	GAACNNNNNNTCC	1 cut(s)	485
AluBI	AGCT	6 cut(s)	61, 202, 281, 451, 459, 481
AluI	AGCT	6 cut(s)	61, 202, 281, 451, 459, 481
AlwI	GGATC	5 cut(s)	87, 172, 226, 387, 400
AlwNI	CAGNNNCTG	2 cut(s)	61, 381
AoxI	GGCC	2 cut(s)	129, 260
ApeKI	GCWGC	1 cut(s)	281
Asp700I	GAANNNNTTC	2 cut(s)	212, 410
AspLEI	GCGC	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	418
AvaII	GGWCC	1 cut(s)	418
BaeGI	GKGCMC	1 cut(s)	150
BamHI	GGATCC	1 cut(s)	392
BauI	CACGAG	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	1 cut(s)	383
BfmI	CTRYAG	1 cut(s)	151
BglI	GCCNNNNNGGC	1 cut(s)	154
BisI	GCNGC	2 cut(s)	132, 282
BlsI	GCNGC	2 cut(s)	133, 283
Bme18I	GGWCC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	2 cut(s)	394, 420
BmsI	GCATC	2 cut(s)	100, 381
BpmI	CTGGAG	1 cut(s)	473
Bpu10I	CCTNAGC	1 cut(s)	158
BpuEI	CTTGAG	2 cut(s)	9, 224
BsaAI	YACGTR	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	132, 423
BsaWI	WCCGGW	1 cut(s)	474
Bsc4I	CCNNNNNNNGG	3 cut(s)	196, 249, 272
Bse3DI	GCAATG	1 cut(s)	333
BseDI	CCNNGG	2 cut(s)	132, 423
BseGI	GGATG	3 cut(s)	232, 394, 499
BseLI	CCNNNNNNNGG	3 cut(s)	196, 249, 272
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	2 cut(s)	108, 345
BseSI	GKGCMC	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	268
Bsh1236I	CGCG	1 cut(s)	134
BshFI	GGCC	2 cut(s)	131, 262
BsiSI	CCGG	1 cut(s)	475
BslFI	GGGAC	1 cut(s)	276
BslI	CCNNNNNNNGG	3 cut(s)	196, 249, 272
BsmFI	GGGAC	1 cut(s)	276
BsnI	GGCC	2 cut(s)	131, 262
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	4 cut(s)	79, 177, 231, 392
BspACI	CCGC	3 cut(s)	132, 134, 295
BspANI	GGCC	2 cut(s)	131, 262
BspCNI	CTCAG	2 cut(s)	107, 346
BspFNI	CGCG	1 cut(s)	134
BspLI	GGNNCC	2 cut(s)	394, 420
BspPI	GGATC	5 cut(s)	87, 172, 226, 387, 400
BsrDI	GCAATG	1 cut(s)	333
BssECI	CCNNGG	2 cut(s)	132, 423
BssMI	GATC	4 cut(s)	79, 177, 231, 392
BssSI	CACGAG	1 cut(s)	191
BssT1I	CCWWGG	1 cut(s)	423
Bst2BI	CACGAG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	383
Bst6I	CTCTTC	1 cut(s)	59
BstBAI	YACGTR	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	4 cut(s)	94, 158, 267, 354
BstDSI	CCRYGG	1 cut(s)	132
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstF5I	GGATG	3 cut(s)	232, 394, 499
BstFNI	CGCG	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	4 cut(s)	82, 180, 234, 395
BstMBI	GATC	4 cut(s)	79, 177, 231, 392
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstSFI	CTRYAG	1 cut(s)	151
BstSLI	GKGCMC	1 cut(s)	150
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	3 cut(s)	79, 177, 392
BstYI	RGATCY	3 cut(s)	79, 177, 392
BsuRI	GGCC	2 cut(s)	131, 262
BtgI	CCRYGG	1 cut(s)	132
BtsCI	GGATG	3 cut(s)	232, 394, 499
BtsIMutI	CAGTG	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	351
CaiI	CAGNNNCTG	2 cut(s)	61, 381
CfoI	GCGC	1 cut(s)	372
Cfr13I	GGNCC	1 cut(s)	418
Cfr42I	CCGCGG	1 cut(s)	135
Csp6I	GTAC	2 cut(s)	303, 445
CviAII	CATG	2 cut(s)	143, 320
CviQI	GTAC	2 cut(s)	303, 445
DdeI	CTNAG	4 cut(s)	94, 158, 267, 354
DpnI	GATC	4 cut(s)	81, 179, 233, 394
DpnII	GATC	4 cut(s)	79, 177, 231, 392
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco130I	CCWWGG	1 cut(s)	423
Eco147I	AGGCCT	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	418
Eco57I	CTGAAG	2 cut(s)	83, 95
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoT14I	CCWWGG	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	2 cut(s)	146, 323
FaiI	YATR	5 cut(s)	87, 117, 144, 153, 321
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	2 cut(s)	142, 319
FauI	CCCGC	1 cut(s)	302
Fnu4HI	GCNGC	2 cut(s)	132, 282
FokI	GGATG	3 cut(s)	239, 401, 506
Fsp4HI	GCNGC	2 cut(s)	132, 282
GlaI	GCGC	1 cut(s)	371
GluI	GCNGC	2 cut(s)	132, 282
GsuI	CTGGAG	1 cut(s)	473
HaeIII	GGCC	2 cut(s)	131, 262
HapII	CCGG	1 cut(s)	475
HhaI	GCGC	1 cut(s)	372
Hin1II	CATG	2 cut(s)	146, 323
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	479
HpaII	CCGG	1 cut(s)	475
Hpy166II	GTNNAC	2 cut(s)	305, 472
Hpy188I	TCNGA	1 cut(s)	377
Hpy188III	TCNNGA	5 cut(s)	56, 193, 235, 386, 486
Hpy8I	GTNNAC	2 cut(s)	305, 472
HpyAV	CCTTC	5 cut(s)	70, 121, 157, 217, 400
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	2 cut(s)	247, 289
HpyCH4V	TGCA	1 cut(s)	319
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
HpyF3I	CTNAG	4 cut(s)	94, 158, 267, 354
HpySE526I	ACGT	2 cut(s)	247, 289
Hsp92II	CATG	2 cut(s)	146, 323
HspAI	GCGC	1 cut(s)	370
KspI	CCGCGG	1 cut(s)	135
Kzo9I	GATC	4 cut(s)	79, 177, 231, 392
LmnI	GCTCC	2 cut(s)	58, 199
LpnPI	CCDG	9 cut(s)	41, 86, 248, 363, 371, 437, 471, 477, 488
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	2 cut(s)	100, 381
MaeII	ACGT	2 cut(s)	247, 289
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	4 cut(s)	81, 179, 233, 394
MboI	GATC	4 cut(s)	79, 177, 231, 392
MboII	GAAGA	3 cut(s)	76, 220, 347
MflI	RGATCY	3 cut(s)	79, 177, 392
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	1 cut(s)	99
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	4 cut(s)	189, 200, 252, 273
MroXI	GAANNNNTTC	2 cut(s)	212, 410
MspA1I	CMGCKG	2 cut(s)	134, 281
MspI	CCGG	1 cut(s)	475
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	154
NdeII	GATC	4 cut(s)	79, 177, 231, 392
NlaIII	CATG	2 cut(s)	146, 323
NlaIV	GGNNCC	2 cut(s)	394, 420
NmuCI	GTSAC	1 cut(s)	68
PceI	AGGCCT	1 cut(s)	262
PdmI	GAANNNNTTC	2 cut(s)	212, 410
PkrI	GCNGC	2 cut(s)	133, 283
Ppu21I	YACGTR	1 cut(s)	248
PspN4I	GGNNCC	2 cut(s)	394, 420
PspPI	GGNCC	1 cut(s)	418
PstNI	CAGNNNCTG	2 cut(s)	61, 381
PsuI	RGATCY	3 cut(s)	79, 177, 392
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	2 cut(s)	304, 446
RsaNI	GTAC	2 cut(s)	303, 445
SacII	CCGCGG	1 cut(s)	135
SatI	GCNGC	2 cut(s)	132, 282
Sau3AI	GATC	4 cut(s)	79, 177, 231, 392
Sau96I	GGNCC	1 cut(s)	418
SduI	GDGCHC	1 cut(s)	150
SfaNI	GCATC	2 cut(s)	100, 381
SfcI	CTRYAG	1 cut(s)	151
Sfr303I	CCGCGG	1 cut(s)	135
SgrBI	CCGCGG	1 cut(s)	135
SinI	GGWCC	1 cut(s)	418
SmlI	CTYRAG	2 cut(s)	24, 203
SmoI	CTYRAG	2 cut(s)	24, 203
Sse9I	AATT	1 cut(s)	99
SseBI	AGGCCT	1 cut(s)	262
SsiI	CCGC	3 cut(s)	132, 134, 295
StuI	AGGCCT	1 cut(s)	262
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	2 cut(s)	250, 292
TaqI	TCGA	1 cut(s)	504
TasI	AATT	1 cut(s)	99
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	1 cut(s)	134
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	2 cut(s)	336, 419
TspRI	CASTG	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	418
XagI	CCTNNNNNAGG	1 cut(s)	270
XmnI	GAANNNNTTC	2 cut(s)	212, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.